Personal tools

NonredundantMotifs:69: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
m (Autoedit moved page NonredundantMotifs:Motif69 to NonredundantMotifs:69 without leaving a redirect: NSchange)
 
(4 intermediate revisions by the same user not shown)
Line 2: Line 2:
|PWM=P0;A;C;G;T!1;1;6;1;4!2;9;0;3;0!3;0;12;0;0!4;12;0;0;0!5;0;0;0;12!6;0;0;0;12!7;0;12;0;0!8;0;11;0;1!9;5;0;0;7!10;1;7;4;0!11;2;4;3;3!12;0;2;8;2
|PWM=P0;A;C;G;T!1;1;6;1;4!2;9;0;3;0!3;0;12;0;0!4;12;0;0;0!5;0;0;0;12!6;0;0;0;12!7;0;12;0;0!8;0;11;0;1!9;5;0;0;7!10;1;7;4;0!11;2;4;3;3!12;0;2;8;2
|entrez_gene_id=7003
|entrez_gene_id=7003
|motif_cluster_2013_march_motif_members= /SWISSREGULON:TEAD1.p2 /JASPAR:MA0090.1;TEAD1 /HOCOMOCO:TEAD3_si~TEAD1_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:TEAD3_si~TEAD1_f1 /JASPAR:MA0090.1;TEAD1 /SWISSREGULON:TEAD1.p2
|name=known69
|name=non-redundant69
|representative_motif_db=JASPAR
|representative_motif_db=JASPAR
|representative_motif_id=MA0090.1
|representative_motif_id=MA0090.1
Line 12: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant69
  • db :JASPAR
  • Id :MA0090.1
  • name :TEAD1
  • score :0.1929336002514893
  • External refs:
EntrezGene:7003
UniProt:7003

  • Internal refs:
EntrezGene:7003


Motif matrix
P0ACGT
11614
29030
301200
412000
500012
600012
701200
801101
95007
101740
112433
120282

Sub Motif Members