NonredundantMotifs:71: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{Known_motif
|entrez_gene_id=5449
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PIT1_f1~PO3F2_si /UNIPROBE:Sox8_secondary;SCI09~Sox17_secondary;SCI09
|name=known71
...") |
m (Autoedit moved page NonredundantMotifs:Motif71 to NonredundantMotifs:71 without leaving a redirect: NSchange) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;0.411937175299342;0.172671332736327;0.20587195038275;0.20951954158158!2;0.171108520940362;0.496660326437858;0.132111221488979;0.200119931132801!3;0.848636810350877;0.0383383199445882;0.0186551802489098;0.0943696894556253!4;0.0227104857920406;0.0278851650629296;0.0322935833138911;0.917110765831139!5;0.0345381923219609;0.0176162763662484;0.0221841164924794;0.925661414819311!6;0.0600211034051851;0.807533941075992;0.0297263562300359;0.102718599288788!7;0.910428780576831;0.0164506223437565;0.0628620409040661;0.0102585561753462!8;0.0499703351708143;0.117801350939192;0.164018783488577;0.668209530401417!9;0.232806925711358;0.0932634390622581;0.568720072973861;0.105209562252523!10;0.417735041843669;0.187636202838869;0.16011482986719;0.234513925450272!11;0.264283831633299;0.335680358499784;0.203995050578312;0.196040759288605!12;0.524448839037564;0.203844472609763;0.113371061958023;0.158335626394649!13;0.196319785493594;0.287667372065113;0.277580504789393;0.2384323376519!14;0.227144161682586;0.276267396423563;0.368394372569987;0.128194069323864 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO:PIT1_f1~PO3F2_si /UNIPROBE: | |entrez_gene_id=30812 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:PIT1_f1~PO3F2_si /UNIPROBE:Sox17_secondary;SCI09~Sox8_secondary;SCI09 | ||
|representative_motif_db= | |name=non-redundant71 | ||
|representative_motif_id= | |representative_motif_db=UNIPROBE | ||
|representative_motif_name= | |representative_motif_id=Sox8_secondary | ||
|score=0. | |representative_motif_name=SCI09 | ||
|uniprot_entry_name= | |score=0.05328855367929437 | ||
|uniprot_entry_name=SOX8_HUMAN | |||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant71
- db :UNIPROBE
- Id :Sox8_secondary
- name :SCI09
- score :0.05328855367929437
- External refs:
- Internal refs:
| Motif matrix | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
