NonredundantMotifs:74: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
m (Autoedit moved page NonredundantMotifs:Motif74 to NonredundantMotifs:74 without leaving a redirect: NSchange) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|entrez_gene_id= | |PWM=P0;A;C;G;T!1;428.3770395165438;462.08950007886995;989.4966909330816;289.74069761693215!2;502.4408127799208;461.55268695007436;1167.9322513895258;37.778177025907894!3;46.24003223664283;120.64705819466127;54.011334135945845;1948.8055035781845!4;143.26317770101758;538.7826297905195;1374.385983189698;113.2721374641934!5;605.5692845488504;6.846823705460277;1440.0520394603623;117.23578043075779!6;145.80191017633007;591.3277167674623;1242.8380957308752;189.73620547076186!7;84.1989510431087;681.6678805386231;1397.5475724621726;6.289524101527463!8;212.66741853627218;176.74818563353213;108.07784560158429;1672.2104783740415!9;6.858197166765027;51.513786202880816;2096.53322951597;14.798715259816918!10;1719.6468869973107;60.749493158851976;113.33530830152851;275.972239687739!11;73.0363254157739;505.38904448986347;932.9298766790175;658.3486815607741 | ||
|motif_cluster_2013_march_motif_members= /HOCOMOCO: | |entrez_gene_id=6720 | ||
|name= | |motif_cluster_2013_march_motif_members= /HOCOMOCO:SRBP2_f1~SRBP1_f2 /HOMER:SREBP2_HepG2-Srebp2-ChIP-Seq~SREBP1A_HepG2-Srebp1a-ChIP-Seq | ||
|name=non-redundant74 | |||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
|representative_motif_id= | |representative_motif_id=SRBP1_f2 | ||
|representative_motif_name= | |representative_motif_name= | ||
|score= | |score=0.1107985686385359 | ||
|uniprot_entry_name= | |uniprot_entry_name=SRBP1_HUMAN | ||
}} | }} | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 10:21, 30 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant74
- db :HOCOMOCO
- Id :SRBP1_f2
- name :
- score :0.1107985686385359
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
