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NonredundantMotifs:74: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;609.7069814681898;577.9041039501179;878.3336339500557;276.05528063164616!2;405.720515019466;707.1756109544475;964.951896082597;264.15197794349774!3;494.2054767763018;386.73299366991745;1331.9324531828045;129.12907637097777!4;350.40388209193935;113.69050159456144;143.53167137109685;1734.373944942392!5;50.244132749905994;77.73771344619745;2128.8593525123006;85.15880129157833!6;121.65571572725959;13.366044602383216;2201.522711261202;5.455528409136009!7;411.3371414844022;516.6249880860175;1149.0691324336724;264.9687379959127!8;260.005063075756;537.9001223280518;1514.6903724031047;29.40444219308533!9;677.9442498673723;351.2166477942834;25.80464937521329;1287.034452963133!10;58.59237511412069;183.5204092993443;2042.5508959047345;57.33631968178278!11;1637.5427379963799;46.970815704424396;526.1740173216805;131.3124289775092!12;368.5120994048417;440.0312237414232;865.3365151282493;668.1201617254982!13;371.10525859117723;490.79313239643824;1055.590008369046;424.5116006433473
|PWM=P0;A;C;G;T!1;428.3770395165438;462.08950007886995;989.4966909330816;289.74069761693215!2;502.4408127799208;461.55268695007436;1167.9322513895258;37.778177025907894!3;46.24003223664283;120.64705819466127;54.011334135945845;1948.8055035781845!4;143.26317770101758;538.7826297905195;1374.385983189698;113.2721374641934!5;605.5692845488504;6.846823705460277;1440.0520394603623;117.23578043075779!6;145.80191017633007;591.3277167674623;1242.8380957308752;189.73620547076186!7;84.1989510431087;681.6678805386231;1397.5475724621726;6.289524101527463!8;212.66741853627218;176.74818563353213;108.07784560158429;1672.2104783740415!9;6.858197166765027;51.513786202880816;2096.53322951597;14.798715259816918!10;1719.6468869973107;60.749493158851976;113.33530830152851;275.972239687739!11;73.0363254157739;505.38904448986347;932.9298766790175;658.3486815607741
|entrez_gene_id=6721
|entrez_gene_id=6720
|motif_cluster_2013_march_motif_members= /HOMER:SREBP2_HepG2-Srebp2-ChIP-Seq~SREBP1A_HepG2-Srebp1a-ChIP-Seq /HOCOMOCO:SRBP1_f2~SRBP2_f1
|motif_cluster_2013_march_motif_members= /HOCOMOCO:SRBP2_f1~SRBP1_f2 /HOMER:SREBP2_HepG2-Srebp2-ChIP-Seq~SREBP1A_HepG2-Srebp1a-ChIP-Seq
|name=known74
|name=non-redundant74
|representative_motif_db=HOCOMOCO
|representative_motif_db=HOCOMOCO
|representative_motif_id=SRBP2_f1
|representative_motif_id=SRBP1_f2
|representative_motif_name=  
|representative_motif_name=  
|score=2.2010523190333684
|score=0.1107985686385359
|uniprot_entry_name=SRBP2_HUMAN
|uniprot_entry_name=SRBP1_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:21, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant74
  • db :HOCOMOCO
  • Id :SRBP1_f2
  • name  :
  • score :0.1107985686385359
  • External refs:
EntrezGene:6720
UniProt:6720

  • Internal refs:
EntrezGene:6720


Motif matrix
P0ACGT
1428.3770395165438462.08950007886995989.4966909330816289.74069761693215
2502.4408127799208461.552686950074361167.932251389525837.778177025907894
346.24003223664283120.6470581946612754.0113341359458451948.8055035781845
4143.26317770101758538.78262979051951374.385983189698113.2721374641934
5605.56928454885046.8468237054602771440.0520394603623117.23578043075779
6145.80191017633007591.32771676746231242.8380957308752189.73620547076186
784.1989510431087681.66788053862311397.54757246217266.289524101527463
8212.66741853627218176.74818563353213108.077845601584291672.2104783740415
96.85819716676502751.5137862028808162096.5332295159714.798715259816918
101719.646886997310760.749493158851976113.33530830152851275.972239687739
1173.0363254157739505.38904448986347932.9298766790175658.3486815607741

Sub Motif Members