Personal tools

NonredundantMotifs:145: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{Known_motif |entrez_gene_id=10865 |motif_cluster_2013_march_motif_members= /UNIPROBE:Arid5a_secondary;SCI09 |name=known145 |representative_motif_db=UNIPROBE |represent...")
 
m (Autoedit moved page NonredundantMotifs:Motif145 to NonredundantMotifs:145 without leaving a redirect: NSchange)
 
(8 intermediate revisions by 2 users not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.171818474794893;0.301056158269957;0.272983710858808;0.254141656076342!2;0.302395808449779;0.167175520870631;0.303663804996695;0.226764865682895!3;0.143417743379079;0.268924854357836;0.0925163619061908;0.495141040356894!4;0.279634036258407;0.190553864351617;0.254921512922246;0.27489058646773!5;0.282521793091176;0.364494257325439;0.178653788678072;0.174330160905313!6;0.67180794910238;0.0580293024285749;0.0596476368157696;0.210515111653276!7;0.834274386241542;0.0732992285220956;0.0527562068364571;0.0396701783999056!8;0.0374260265202901;0.0541624682468082;0.0972876506622248;0.811123854570677!9;0.781687011470387;0.119873477031243;0.0595360771638669;0.0389034343345037!10;0.094411302375252;0.739417658113489;0.148945962228046;0.0172250772832127!11;0.121495542183723;0.182463683422598;0.688059185511045;0.00798158888263429!12;0.531845124553274;0.0585129870779191;0.264994447871685;0.144647440497122!13;0.406274049878601;0.102159448175403;0.285680702665462;0.205885799280533!14;0.434643007022191;0.139451979646365;0.187266769412023;0.238638243919421!15;0.151869112283505;0.281521051645057;0.246109594746648;0.32050024132479!16;0.351313940798544;0.200542211760488;0.276808714681745;0.171335132759223!17;0.442449108531442;0.213938960974302;0.210894821994709;0.132717108499547
|entrez_gene_id=10865
|entrez_gene_id=10865
|motif_cluster_2013_march_motif_members= /UNIPROBE:Arid5a_secondary;SCI09
|motif_cluster_2013_march_motif_members= /UNIPROBE:Arid5a_secondary;SCI09
|name=known145
|name=non-redundant145
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Arid5a_secondary
|representative_motif_id=Arid5a_secondary
Line 11: Line 12:
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant145
  • db :UNIPROBE
  • Id :Arid5a_secondary
  • name :SCI09
  • score :0.010689289860944869
  • External refs:
EntrezGene:10865
UniProt:10865

  • Internal refs:
EntrezGene:10865


Motif matrix
P0ACGT
10.1718184747948930.3010561582699570.2729837108588080.254141656076342
20.3023958084497790.1671755208706310.3036638049966950.226764865682895
30.1434177433790790.2689248543578360.09251636190619080.495141040356894
40.2796340362584070.1905538643516170.2549215129222460.27489058646773
50.2825217930911760.3644942573254390.1786537886780720.174330160905313
60.671807949102380.05802930242857490.05964763681576960.210515111653276
70.8342743862415420.07329922852209560.05275620683645710.0396701783999056
80.03742602652029010.05416246824680820.09728765066222480.811123854570677
90.7816870114703870.1198734770312430.05953607716386690.0389034343345037
100.0944113023752520.7394176581134890.1489459622280460.0172250772832127
110.1214955421837230.1824636834225980.6880591855110450.00798158888263429
120.5318451245532740.05851298707791910.2649944478716850.144647440497122
130.4062740498786010.1021594481754030.2856807026654620.205885799280533
140.4346430070221910.1394519796463650.1872667694120230.238638243919421
150.1518691122835050.2815210516450570.2461095947466480.32050024132479
160.3513139407985440.2005422117604880.2768087146817450.171335132759223
170.4424491085314420.2139389609743020.2108948219947090.132717108499547

Sub Motif Members