Personal tools

NonredundantMotifs:145: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Known145 to MotifCluster2013March:Non redundant145 without leaving a redirect: NSchange)
m (Autoedit moved page NonredundantMotifs:Motif145 to NonredundantMotifs:145 without leaving a redirect: NSchange)
 
(One intermediate revision by the same user not shown)
(No difference)

Latest revision as of 10:22, 30 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant145
  • db :UNIPROBE
  • Id :Arid5a_secondary
  • name :SCI09
  • score :0.010689289860944869
  • External refs:
EntrezGene:10865
UniProt:10865

  • Internal refs:
EntrezGene:10865


Motif matrix
P0ACGT
10.1718184747948930.3010561582699570.2729837108588080.254141656076342
20.3023958084497790.1671755208706310.3036638049966950.226764865682895
30.1434177433790790.2689248543578360.09251636190619080.495141040356894
40.2796340362584070.1905538643516170.2549215129222460.27489058646773
50.2825217930911760.3644942573254390.1786537886780720.174330160905313
60.671807949102380.05802930242857490.05964763681576960.210515111653276
70.8342743862415420.07329922852209560.05275620683645710.0396701783999056
80.03742602652029010.05416246824680820.09728765066222480.811123854570677
90.7816870114703870.1198734770312430.05953607716386690.0389034343345037
100.0944113023752520.7394176581134890.1489459622280460.0172250772832127
110.1214955421837230.1824636834225980.6880591855110450.00798158888263429
120.5318451245532740.05851298707791910.2649944478716850.144647440497122
130.4062740498786010.1021594481754030.2856807026654620.205885799280533
140.4346430070221910.1394519796463650.1872667694120230.238638243919421
150.1518691122835050.2815210516450570.2461095947466480.32050024132479
160.3513139407985440.2005422117604880.2768087146817450.171335132759223
170.4424491085314420.2139389609743020.2108948219947090.132717108499547

Sub Motif Members