NonredundantMotifs:146

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

• Name :non-redundant146
• db :UNIPROBE
• Id :Gabpa_secondary
• name :SCI09
• score :2.566099954572482
  
• External refs:

EntrezGene:2551
UniProt:2551

• Internal refs:

EntrezGene:2551

Motif matrix

P0 A C G T 1 0.233133339156189 0.551827616522044 0.139009183714433 0.076029860607334 2 0.100084746950863 0.525562098450111 0.10168796465267 0.272665189946356 3 0.252996031651427 0.198121241192533 0.299171373771941 0.249711353384099 4 0.141471209905834 0.19528955137146 0.234560085469902 0.428679153252804 5 0.16099277566735 0.44276490301237 0.0826527361491613 0.313589585171118 6 0.307889755304365 0.127949813107235 0.0717127398394238 0.492447691748975 7 0.0934528928492841 0.148935060504859 0.0802878475645367 0.677324199081321 8 0.0835351224674759 0.634211812396974 0.0746523976115838 0.207600667523966 9 0.098119166747495 0.639327706020271 0.0999574346154852 0.162595692616749 10 0.0674303361733764 0.451775703257592 0.357187662190642 0.12360629837839 11 0.28625899695387 0.466974929291126 0.0630134041495288 0.183752669605476 12 0.203211228937249 0.42263706533952 0.133368239796288 0.240783465926943 13 0.111205617031294 0.315595311444844 0.192833330259886 0.380365741263976 14 0.19946187518116 0.324651628692659 0.305491243779281 0.170395252346901 15 0.347919196799417 0.292386663001252 0.23072410786487 0.128970032334461 16 0.254647938579976 0.29419572375395 0.194942352887174 0.256213984778901