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NonredundantMotifs:104: Difference between revisions

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{{Known_motif
{{Known_motif
|entrez_gene_id=
|PWM=PO;A;C;G;T!1;35.413303;14.42905;14.719405;26.089752!2;84.290751;3.708783;2.651976;0!3;8.178523;49.655634;0.925203;31.89215!4;47.143448;7.147226;6.346118;30.014718!5;50.759079;4.662631;33.419064;1.810736!6;44.579319;24.293139;0;21.779052!7;23.34252;34.675935;2.728696;29.904359!8;77.998747;5.563564;6.237357;0.851842!9;58.30186;0.864426;24.437907;7.047317!10;76.031374;1.836786;10.042352;2.740998!11;17.318536;10.906996;28.008987;34.416991!12;24.40405;16.339156;0.986844;48.92146!13;46.938051;21.03341;0.986844;21.693205!14;68.700895;0;14.677712;7.272903!15;0;3.593987;0.859481;86.198042!16;73.355963;0.899166;14.550641;1.84574!17;71.672612;5.434777;0;13.544121!18;77.099889;4.392148;9.159473;0
|entrez_gene_id=1044,1045,12592
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HXC6_f1 /SWISSREGULON:CDX1,2,4.p2
|motif_cluster_2013_march_motif_members= /HOCOMOCO:HXC6_f1 /SWISSREGULON:CDX1,2,4.p2
|name=known104
|name=non-redundant104
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=CDX1,2,4.p2
|representative_motif_id=CDX1,2,4.p2
|representative_motif_name=  
|representative_motif_name=CDX1,2,4
|score=0.09679290326588724
|score=0.09679290326588724
|uniprot_entry_name=
|uniprot_entry_name=CDX1,2,4
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 15:45, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant104
  • db :SWISSREGULON
  • Id :CDX1,2,4.p2
  • name :CDX1,2,4
  • score :0.09679290326588724
  • External refs:
EntrezGene:1044
UniProt:1044

EntrezGene:1045
UniProt:1045

EntrezGene:12592
UniProt:12592

  • Internal refs:
EntrezGene:1044

EntrezGene:1045

EntrezGene:12592


Motif matrix
POACGT
135.41330314.4290514.71940526.089752
284.2907513.7087832.6519760
38.17852349.6556340.92520331.89215
447.1434487.1472266.34611830.014718
550.7590794.66263133.4190641.810736
644.57931924.293139021.779052
723.3425234.6759352.72869629.904359
877.9987475.5635646.2373570.851842
958.301860.86442624.4379077.047317
1076.0313741.83678610.0423522.740998
1117.31853610.90699628.00898734.416991
1224.4040516.3391560.98684448.92146
1346.93805121.033410.98684421.693205
1468.700895014.6777127.272903
1503.5939870.85948186.198042
1673.3559630.89916614.5506411.84574
1771.6726125.434777013.544121
1877.0998894.3921489.1594730

Sub Motif Members