NonredundantMotifs:142: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (4 intermediate revisions by one other user not shown) | |||
| Line 1: | Line 1: | ||
{{Known_motif | {{Known_motif | ||
|PWM=PO;A;C;G;T!1;33.046269;13.763313;71.531797;25.665831!2;59.081902;8.546048;59.876456;16.502804!3;3.798159;12.122525;71.1798040000001;56.906722!4;30.897754;12.652596;99.073151;1.383709!5;134.576526;1.336692;2.895185;5.198807!6;101.527105;1.088274;4.580056;36.811775!7;0.363531;1.467583;1.108087;141.068009!8;31.891998;2.391915;6.552784;103.170513!9;108.197849;15.000047;2.31903;18.490284!10;77.615726;30.604111;34.974266;0.813107!11;117.002649;5.821984;18.607765;2.574812!12;68.741944;25.575918;47.073832;2.615516!13;2.389918;27.642695;10.334816;103.639781!14;40.534458;1.85232;53.107732;48.5127!15;26.757537;37.397105;54.813895;25.038673 | |PWM=PO;A;C;G;T!1;33.046269;13.763313;71.531797;25.665831!2;59.081902;8.546048;59.876456;16.502804!3;3.798159;12.122525;71.1798040000001;56.906722!4;30.897754;12.652596;99.073151;1.383709!5;134.576526;1.336692;2.895185;5.198807!6;101.527105;1.088274;4.580056;36.811775!7;0.363531;1.467583;1.108087;141.068009!8;31.891998;2.391915;6.552784;103.170513!9;108.197849;15.000047;2.31903;18.490284!10;77.615726;30.604111;34.974266;0.813107!11;117.002649;5.821984;18.607765;2.574812!12;68.741944;25.575918;47.073832;2.615516!13;2.389918;27.642695;10.334816;103.639781!14;40.534458;1.85232;53.107732;48.5127!15;26.757537;37.397105;54.813895;25.038673 | ||
|entrez_gene_id= | |entrez_gene_id=5453 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:POU3F1..4.p2 | |motif_cluster_2013_march_motif_members= /SWISSREGULON:POU3F1..4.p2 | ||
|name= | |name=non-redundant142 | ||
|representative_motif_db=SWISSREGULON | |representative_motif_db=SWISSREGULON | ||
|representative_motif_id=POU3F1..4.p2 | |representative_motif_id=POU3F1..4.p2 | ||
| Line 12: | Line 12: | ||
[[Category:Motif]] | [[Category:Motif]] | ||
[[Category:MotifCluster2013March]] | [[Category:MotifCluster2013March]] | ||
[[Category:NonRedundantMotifCluster]] | |||
Latest revision as of 15:52, 31 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :non-redundant142
- db :SWISSREGULON
- Id :POU3F1..4.p2
- name :POU3F1
- score :0.0499083096501652
- External refs:
- Internal refs:
| Motif matrix | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Sub Motif Members
