Personal tools

NonredundantMotifs:194: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
m (Autoedit moved page MotifCluster2013March:Known194 to MotifCluster2013March:Non redundant194 without leaving a redirect: NSchange)
No edit summary
 
(2 intermediate revisions by one other user not shown)
Line 1: Line 1:
{{Known_motif
{{Known_motif
|PWM=PO;A;C;G;T!01;20.00;15.00;55.00;10.00!02;21.00;12.00;61.00;6.00!03;24.00;1.00;74.00;1.00!04;34.00;36.00;29.00;1.00!05;8.08;62.63;0.00;29.29!06;1.00;98.00;1.00;0.00!07;98.00;1.00;0.00;1.00!08;3.00;0.00;3.00;94.00!09;0.00;1.00;0.00;99.00!10;16.00;2.00;33.00;49.00!11;20.00;62.00;10.00;8.00!12;0.00;100.00;0.00;0.00
|PWM=PO;A;C;G;T!01;20.00;15.00;55.00;10.00!02;21.00;12.00;61.00;6.00!03;24.00;1.00;74.00;1.00!04;34.00;36.00;29.00;1.00!05;8.08;62.63;0.00;29.29!06;1.00;98.00;1.00;0.00!07;98.00;1.00;0.00;1.00!08;3.00;0.00;3.00;94.00!09;0.00;1.00;0.00;99.00!10;16.00;2.00;33.00;49.00!11;20.00;62.00;10.00;8.00!12;0.00;100.00;0.00;0.00
|entrez_gene_id=NANOG(mouse)
|entrez_gene_id=414065
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NANOG(mouse).p2
|motif_cluster_2013_march_motif_members= /SWISSREGULON:NANOG(mouse).p2
|name=non-redundant194
|name=non-redundant194

Latest revision as of 15:57, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant194
  • db :SWISSREGULON
  • Id :NANOG(mouse).p2
  • name :NANOG(mouse)
  • score :0.05590746534872926
  • External refs:
EntrezGene:414065
UniProt:414065

  • Internal refs:
EntrezGene:414065


Motif matrix
POACGT
0120.0015.0055.0010.00
0221.0012.0061.006.00
0324.001.0074.001.00
0434.0036.0029.001.00
058.0862.630.0029.29
061.0098.001.000.00
0798.001.000.001.00
083.000.003.0094.00
090.001.000.0099.00
1016.002.0033.0049.00
1120.0062.0010.008.00
120.00100.000.000.00

Sub Motif Members