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NonredundantMotifs:113: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;0.504898202286499;0.140203542278687;0.135418230098992;0.219480025335822!2;0.282347535703405;0.244881453360158;0.300572115167169;0.172198895769268!3;0.183939394108432;0.100669712681586;0.384783188447554;0.330607704762429!4;0.326709234222526;0.269523319779715;0.194043490217059;0.2097239557807!5;0.142989094755767;0.55739279787912;0.0668258170712701;0.232792290293843!6;0.0383563035950062;0.0140519832399898;0.932450144850589;0.0151415683144146!7;0.092102144037025;0.7788437074114;0.125081929257435;0.00397221929413972!8;0.0102539808428305;0.00125195698258373;0.00523067077519557;0.98326339139939!9;0.0334862164690952;0.000890569761930885;0.947485793838994;0.0181374199299797!10;0.00535960235539802;0.00740705193629701;0.00372911841414499;0.98350422729416!11;0.603485233500431;0.00717936793441746;0.00348228839061932;0.385853110174532!12;0.798025727305311;0.0297882414026864;0.0323698093825484;0.139816221909455!13;0.52962238030381;0.100632388179877;0.0165070666971172;0.353238164819196!14;0.243580758972542;0.126094417797826;0.401401847564122;0.22892297566551!15;0.20748400399558;0.285455573348398;0.353714762662594;0.153345659993428!16;0.28241264977596;0.188409542780794;0.441463256233886;0.08771455120936!17;0.422774156888567;0.152964990711796;0.0941056640263262;0.330155188373311
|PWM=P0;A;C;G;T!1;0.504898202286499;0.140203542278687;0.135418230098992;0.219480025335822!2;0.282347535703405;0.244881453360158;0.300572115167169;0.172198895769268!3;0.183939394108432;0.100669712681586;0.384783188447554;0.330607704762429!4;0.326709234222526;0.269523319779715;0.194043490217059;0.2097239557807!5;0.142989094755767;0.55739279787912;0.0668258170712701;0.232792290293843!6;0.0383563035950062;0.0140519832399898;0.932450144850589;0.0151415683144146!7;0.092102144037025;0.7788437074114;0.125081929257435;0.00397221929413972!8;0.0102539808428305;0.00125195698258373;0.00523067077519557;0.98326339139939!9;0.0334862164690952;0.000890569761930885;0.947485793838994;0.0181374199299797!10;0.00535960235539802;0.00740705193629701;0.00372911841414499;0.98350422729416!11;0.603485233500431;0.00717936793441746;0.00348228839061932;0.385853110174532!12;0.798025727305311;0.0297882414026864;0.0323698093825484;0.139816221909455!13;0.52962238030381;0.100632388179877;0.0165070666971172;0.353238164819196!14;0.243580758972542;0.126094417797826;0.401401847564122;0.22892297566551!15;0.20748400399558;0.285455573348398;0.353714762662594;0.153345659993428!16;0.28241264977596;0.188409542780794;0.441463256233886;0.08771455120936!17;0.422774156888567;0.152964990711796;0.0941056640263262;0.330155188373311
|entrez_gene_id=-
|entrez_gene_id=298346,194738
|motif_cluster_2013_march_motif_members= /UNIPROBE:Rhox11_1765.2;CELL08~Rhox11_2205.1;CELL08
|motif_cluster_2013_march_motif_members= /UNIPROBE:Rhox11_2205.1;CELL08~Rhox11_1765.2;CELL08
|name=known113
|name=non-redundant113
|representative_motif_db=UNIPROBE
|representative_motif_db=UNIPROBE
|representative_motif_id=Rhox11_2205.1
|representative_motif_id=Rhox11_2205.1
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Latest revision as of 16:12, 31 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant113
  • db :UNIPROBE
  • Id :Rhox11_2205.1
  • name :CELL08
  • score :0.017889066603791456
  • External refs:
EntrezGene:298346
UniProt:298346

EntrezGene:194738
UniProt:194738

  • Internal refs:
EntrezGene:298346

EntrezGene:194738


Motif matrix
P0ACGT
10.5048982022864990.1402035422786870.1354182300989920.219480025335822
20.2823475357034050.2448814533601580.3005721151671690.172198895769268
30.1839393941084320.1006697126815860.3847831884475540.330607704762429
40.3267092342225260.2695233197797150.1940434902170590.2097239557807
50.1429890947557670.557392797879120.06682581707127010.232792290293843
60.03835630359500620.01405198323998980.9324501448505890.0151415683144146
70.0921021440370250.77884370741140.1250819292574350.00397221929413972
80.01025398084283050.001251956982583730.005230670775195570.98326339139939
90.03348621646909520.0008905697619308850.9474857938389940.0181374199299797
100.005359602355398020.007407051936297010.003729118414144990.98350422729416
110.6034852335004310.007179367934417460.003482288390619320.385853110174532
120.7980257273053110.02978824140268640.03236980938254840.139816221909455
130.529622380303810.1006323881798770.01650706669711720.353238164819196
140.2435807589725420.1260944177978260.4014018475641220.22892297566551
150.207484003995580.2854555733483980.3537147626625940.153345659993428
160.282412649775960.1884095427807940.4414632562338860.08771455120936
170.4227741568885670.1529649907117960.09410566402632620.330155188373311

Sub Motif Members

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