Template:Known motif: Difference between revisions
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* Id :[[motifid::{{{representative_motif_id}}}]] | * Id :[[motifid::{{{representative_motif_id}}}]] | ||
* name :[[motifname::{{{representative_motif_name}}}]] | * name :[[motifname::{{{representative_motif_name}}}]] | ||
* score :[[motifscore::{{{score}}}]] | * score :[[motifscore::{{{score}}}]]<br> | ||
External refs:<br> | |||
* Entry name : [http://www.uniprot.org/uniprot/?query={{{uniprot_entry_name}}} {{{uniprot_entry_name}}}] | * Entry name : [http://www.uniprot.org/uniprot/?query={{{uniprot_entry_name}}} {{{uniprot_entry_name}}}] | ||
* | * Gene id :[http://www.ncbi.nlm.nih.gov/gene?term={{{entrez_gene_id}}} EntrezGene:[[GeneID::{{{entrez_gene_id}}}]]] | ||
<!--{{#ifeq: {{{representative_motif_db}}} | JASPAR |[[JASPAR_motif:{{{representative_motif_id}}}|]] | not equal}}--> | <!--{{#ifeq: {{{representative_motif_db}}} | JASPAR |[[JASPAR_motif:{{{representative_motif_id}}}|]] | not equal}}--> | ||
Revision as of 16:06, 3 June 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :{{{name}}}
- db :{{{representative_motif_db}}}
- Id :{{{representative_motif_id}}}
- name :{{{representative_motif_name}}}
- score :{{{score}}}
External refs:
- Entry name : {{{uniprot_entry_name}}}
- Gene id :EntrezGene:{{{entrez_gene_id}}}
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Sub Motif Members
