FFCP PHASE1:Hg19::chr1:45988542..45988573,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=5052 | |EntrezGene=5052 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9352 | |HGNC=9352 | ||
|TSSclassifier=S | |||
|UniProt=Q06830 | |UniProt=Q06830 | ||
|association_with_transcript=0bp_to_NM_001202431_5end | |association_with_transcript=0bp_to_NM_001202431_5end | ||
Revision as of 17:24, 5 July 2013
| Short description: | p2@PRDX1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_PRDX1_5end |
| Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
| Association with transcript: | 0bp_to_NM_001202431_5end |
| EntrezGene: | PRDX1 |
| HGNC: | 9352 |
| UniProt: | Q06830 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p2@PRDX1 |
|---|
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 2.58e-23 | 253 |
| germ line cell | 5.91e-12 | 7 |
| germ cell | 5.91e-12 | 7 |
| hepatocyte | 2.07e-10 | 12 |
| endodermal cell | 7.35e-10 | 58 |
| epithelial cell of Malassez | 7.93e-07 | 3 |
| Ontology term | p-value | n |
|---|---|---|
| larynx | 2.51e-22 | 9 |
| foregut | 2.65e-14 | 87 |
| respiratory primordium | 2.06e-12 | 38 |
| endoderm of foregut | 2.06e-12 | 38 |
| upper respiratory tract | 1.87e-11 | 19 |
| segment of respiratory tract | 1.73e-10 | 47 |
| digestive system | 1.29e-09 | 145 |
| digestive tract | 1.29e-09 | 145 |
| primitive gut | 1.29e-09 | 145 |
| respiratory system | 1.30e-09 | 74 |
| Ontology term | p-value | n |
|---|---|---|
| carcinoma | 4.96e-43 | 106 |
| cell type cancer | 4.66e-34 | 143 |
| cancer | 5.22e-23 | 235 |
| disease of cellular proliferation | 3.51e-22 | 239 |
| respiratory system cancer | 1.02e-07 | 16 |
| squamous cell carcinoma | 3.02e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
