FFCP PHASE1:Hg19::chr11:107799268..107799291,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=54734|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16521|TSSclassifier=S|UniProt=Q14964|association_with_transcript=0bp_to_NM_017516,uc001pjt.2_5end|description=CAGE_peak_4_at_RAB39A_5end|id=chr11:107799268..107799291,+|ontology_enrichment_celltype=CL:0002194!2.51e-23!63;CL:0000576!2.51e-23!63;CL:0000040!2.51e-23!63;CL:0000559!2.51e-23!63;CL:0002009!4.00e-22!65;CL:0000839!1.94e-19!70;CL:0000557!5.98e-19!71;CL:0000766!1.46e-17!76;CL:0002057!8.35e-15!42;CL:0000860!3.71e-13!45;CL:0000763!3.18e-09!112;CL:0000049!3.18e-09!112;CL:0002087!6.16e-09!119;CL:0002322!1.54e-07!5;CL:0000039!4.50e-07!7;CL:0000586!4.50e-07!7;CL:0002031!5.58e-07!124|ontology_enrichment_celltype_v019=CL:0002322;2.83e-23;5!CL:0002321;5.30e-14;15!CL:0002619;5.34e-14;3!CL:0000235;9.84e-12;6!CL:0002319;1.36e-11;25!CL:0000047;1.25e-09;2!CL:0000123;2.83e-09;2!CL:0000242;2.83e-09;2!CL:0000540;1.43e-07;6!CL:0000404;1.43e-07;6|ontology_enrichment_celltype_v019_2=CL:0002322,2.13e-23,5;CL:0002619,3.16e-14,3;CL:0000047,4.15e-14,8;CL:0000235,8.34e-12,6;CL:0002319,1.04e-11,25;CL:0000133,4.21e-11,59;CL:0002194,7.58e-11,59;CL:0000576,7.58e-11,59;CL:0000040,7.58e-11,59;CL:0000559,7.58e-11,59;CL:0002009,2.12e-10,61;CL:0000839,2.10e-09,66;CL:0000242,2.39e-09,2;CL:0000557,3.19e-09,67;CL:0000221,1.28e-08,72;CL:0000766,2.16e-08,72;CL:0000540,1.45e-07,6;CL:0000031,1.45e-07,6;CL:0000404,1.45e-07,6|ontology_enrichment_development_v019=CL:0000031;1.43e-07;6|ontology_enrichment_disease=DOID:3095!1.73e-07!22;DOID:2994!1.73e-07!22|ontology_enrichment_disease_v019=DOID:5409;2.63e-10;4!DOID:154;5.41e-10;2!DOID:4236;5.41e-10;2|ontology_enrichment_disease_v019_2=DOID:5409,3.30e-10,4;DOID:154,7.39e-10,2;DOID:4236,7.39e-10,2|ontology_enrichment_uberon=UBERON:0001474!9.87e-19!86;UBERON:0002390!3.15e-16!102;UBERON:0003061!3.15e-16!102;UBERON:0002371!4.96e-16!80;UBERON:0002193!1.03e-14!112;UBERON:0004765!3.35e-14!101;UBERON:0001434!3.35e-14!101;UBERON:0002405!1.14e-11!115;UBERON:0000073!6.47e-10!94;UBERON:0001016!6.47e-10!94;UBERON:0000922!1.61e-08!612;UBERON:0001017!3.75e-08!82;UBERON:0005743!7.74e-08!86;UBERON:0007023!4.65e-07!115|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.41e-08,82;UBERON:0002371,8.33e-08,76;UBERON:0004765,3.35e-07,90|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34465029290355,0,0,0,0,0,0,0,0.136874425072884,0.125542639594803,0.152826811495903,0.0821005894499457,0.236132343941038,0,0,0.154816123316076,0,0,0,0,0,0.293600439334847,0,0.401088894940283,0.217010870715852,1.79132379391939,2.59114932815184,4.12120908214698,0.436194716338694,0.377875943688809,0.970336244751265,0,0.822335776043652,1.54853185447552,1.1507695692886,0.256160706529101,0.709446689665756,2.06847408441971,0.645484683583826,0,0,0.272906150057846,0,0.306083892370903,0,0,0.659702600373432,0,0.852449501065388,0.290209238628584,0,0,0.502497330513487,0.521482918420201,0.65156653411535,0.605399502633369,0,0,0.422510572623884,0.637812899895131,1.46761051855863,0.336985893439485,0.300353785683013,0.48217676009124,0.570025487482497,0.39783335439818,0.547992461293902,0,0,0,0,0,0.574752439954483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0.327447688744282,0,0,1.62273696827342,0.870648686496336,1.06366368415092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.17223831068289,5.16866096453793,3.95059405756363,2.69518743039963,3.5324919122588,2.91981887260664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,1.96973604869918,0.702012795417713,2.37809859661965,0,0,0,0,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.102827492703324,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,2.51128545716063,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,2.60279707715243,0,0.335032530668698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0,0.426910231213777,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0.103041011647722,0.732555718546747,0.660075999364704,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0.476463550915578,0,0,0,0,1.49553699578462,0.962479855263359,0,0,0,0,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0.605399121573143,0.425846237690326,0,0.921722292925374,1.3420566473545,0.667396566847634,0,0,0,0,0,0,0,0.293016358543788,0.606802608747567,0,0,0,0,0,0.994147647766298,0.562677665642051,0,0,0,0.19924798825107,0.276283915531148,0.755798243562828,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,2.06846023944879,0.291604613383254,2.08349993919951,0,0,0,0.221158519862449,0,0.219385397153973,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=54734 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16521 | |||
|TSSclassifier=S | |||
|UniProt=Q14964 | |||
|association_with_transcript=0bp_to_NM_017516,uc001pjt.2_5end | |||
|description=CAGE_peak_4_at_RAB39A_5end | |||
|id=chr11:107799268..107799291,+ | |||
|ontology_enrichment_celltype=CL:0002194!2.51e-23!63;CL:0000576!2.51e-23!63;CL:0000040!2.51e-23!63;CL:0000559!2.51e-23!63;CL:0002009!4.00e-22!65;CL:0000839!1.94e-19!70;CL:0000557!5.98e-19!71;CL:0000766!1.46e-17!76;CL:0002057!8.35e-15!42;CL:0000860!3.71e-13!45;CL:0000763!3.18e-09!112;CL:0000049!3.18e-09!112;CL:0002087!6.16e-09!119;CL:0002322!1.54e-07!5;CL:0000039!4.50e-07!7;CL:0000586!4.50e-07!7;CL:0002031!5.58e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0002322;2.83e-23;5!CL:0002321;5.30e-14;15!CL:0002619;5.34e-14;3!CL:0000235;9.84e-12;6!CL:0002319;1.36e-11;25!CL:0000047;1.25e-09;2!CL:0000123;2.83e-09;2!CL:0000242;2.83e-09;2!CL:0000540;1.43e-07;6!CL:0000404;1.43e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.13e-23,5;CL:0002619,3.16e-14,3;CL:0000047,4.15e-14,8;CL:0000235,8.34e-12,6;CL:0002319,1.04e-11,25;CL:0000133,4.21e-11,59;CL:0002194,7.58e-11,59;CL:0000576,7.58e-11,59;CL:0000040,7.58e-11,59;CL:0000559,7.58e-11,59;CL:0002009,2.12e-10,61;CL:0000839,2.10e-09,66;CL:0000242,2.39e-09,2;CL:0000557,3.19e-09,67;CL:0000221,1.28e-08,72;CL:0000766,2.16e-08,72;CL:0000540,1.45e-07,6;CL:0000031,1.45e-07,6;CL:0000404,1.45e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000031;1.43e-07;6 | |||
|ontology_enrichment_disease=DOID:3095!1.73e-07!22;DOID:2994!1.73e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.63e-10;4!DOID:154;5.41e-10;2!DOID:4236;5.41e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,3.30e-10,4;DOID:154,7.39e-10,2;DOID:4236,7.39e-10,2 | |||
|ontology_enrichment_uberon=UBERON:0001474!9.87e-19!86;UBERON:0002390!3.15e-16!102;UBERON:0003061!3.15e-16!102;UBERON:0002371!4.96e-16!80;UBERON:0002193!1.03e-14!112;UBERON:0004765!3.35e-14!101;UBERON:0001434!3.35e-14!101;UBERON:0002405!1.14e-11!115;UBERON:0000073!6.47e-10!94;UBERON:0001016!6.47e-10!94;UBERON:0000922!1.61e-08!612;UBERON:0001017!3.75e-08!82;UBERON:0005743!7.74e-08!86;UBERON:0007023!4.65e-07!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001474,3.41e-08,82;UBERON:0002371,8.33e-08,76;UBERON:0004765,3.35e-07,90 | |||
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| |||
|short_description=p4@RAB39A | |||
}} |
Revision as of 15:33, 10 September 2013
Short description: | p4@RAB39A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_RAB39A_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_017516, uc001pjt.2_5end |
EntrezGene: | RAB39A |
HGNC: | 16521 |
UniProt: | Q14964 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.13e-23 | 5 |
adult endothelial progenitor cell | 3.16e-14 | 3 |
neuronal stem cell | 4.15e-14 | 8 |
macrophage | 8.34e-12 | 6 |
neural cell | 1.04e-11 | 25 |
neurectodermal cell | 4.21e-11 | 59 |
monopoietic cell | 7.58e-11 | 59 |
monocyte | 7.58e-11 | 59 |
monoblast | 7.58e-11 | 59 |
promonocyte | 7.58e-11 | 59 |
macrophage dendritic cell progenitor | 2.12e-10 | 61 |
myeloid lineage restricted progenitor cell | 2.10e-09 | 66 |
Merkel cell | 2.39e-09 | 2 |
granulocyte monocyte progenitor cell | 3.19e-09 | 67 |
ectodermal cell | 1.28e-08 | 72 |
myeloid leukocyte | 2.16e-08 | 72 |
neuron | 1.45e-07 | 6 |
neuroblast | 1.45e-07 | 6 |
electrically signaling cell | 1.45e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
bone element | 3.41e-08 | 82 |
bone marrow | 8.33e-08 | 76 |
skeletal element | 3.35e-07 | 90 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 3.30e-10 | 4 |
mixed cell type cancer | 7.39e-10 | 2 |
carcinosarcoma | 7.39e-10 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.