FFCP PHASE1:Hg19::chr11:2153950..2153990,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=|TSSclassifier=S|UniProt=|association_with_transcript=26bp_to_BC021076_5end|coexpression_cluster_id=C172|description=CAGE_peak_1_at_BC021076_5end|id=chr11:2153950..2153990,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000349;9.92e-14;19|ontology_enrichment_celltype_v019_2=CL:0000349,1.07e-13,19|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000481!8.72e-13!347;UBERON:0000119!6.06e-11!312;UBERON:0005631!1.02e-10!14;UBERON:0000158!1.02e-10!14;UBERON:0007023!1.03e-10!115;UBERON:0000468!1.59e-10!659;UBERON:0000483!2.99e-10!309;UBERON:0000475!6.01e-10!365;UBERON:0004119!6.63e-09!169;UBERON:0000925!6.63e-09!169;UBERON:0006595!6.63e-09!169;UBERON:0000064!1.20e-08!219;UBERON:0000922!1.28e-08!612;UBERON:0000478!1.94e-08!24;UBERON:0000062!9.62e-08!511;UBERON:0003124!2.24e-07!7;UBERON:0002107!2.89e-07!19;UBERON:0006925!2.89e-07!19;UBERON:0008836!2.89e-07!19;UBERON:0002616!4.31e-07!59;UBERON:0000477!4.72e-07!286;UBERON:0002050!5.58e-07!605;UBERON:0005423!5.58e-07!605;UBERON:0005256!6.37e-07!143;UBERON:0000955!9.05e-07!69;UBERON:0006238!9.05e-07!69|ontology_enrichment_uberon_v019=UBERON:0000478;1.95e-13;24!UBERON:0005631;9.32e-10;10!UBERON:0000158;9.32e-10;10!UBERON:0002107;2.62e-08;19!UBERON:0006925;2.62e-08;19!UBERON:0011135;2.14e-07;5!UBERON:0002216;2.14e-07;5!UBERON:0011134;2.14e-07;5!UBERON:0002209;2.14e-07;5!UBERON:0002213;2.14e-07;5!UBERON:0007844;2.14e-07;5!UBERON:0011138;2.14e-07;5!UBERON:0001130;2.14e-07;5!UBERON:0001066;2.14e-07;5!UBERON:0001468;2.14e-07;5!UBERON:0001987;6.51e-07;4!UBERON:0005284;7.55e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.52e-15,14;UBERON:0000158,7.52e-15,14;UBERON:0000478,2.07e-13,24;UBERON:0003104,8.25e-13,160;UBERON:0009142,8.25e-13,160;UBERON:0003124,6.35e-11,7;UBERON:0005256,3.44e-09,122;UBERON:0004119,1.57e-08,160;UBERON:0000925,1.57e-08,160;UBERON:0006595,1.57e-08,160;UBERON:0002107,2.13e-08,19;UBERON:0006925,2.13e-08,19;UBERON:0008836,2.13e-08,19;UBERON:0001008,5.72e-08,48;UBERON:0007499,1.56e-07,25;UBERON:0006554,1.78e-07,47;UBERON:0011135,1.92e-07,5;UBERON:0002216,1.92e-07,5;UBERON:0011134,1.92e-07,5;UBERON:0002209,1.92e-07,5;UBERON:0002213,1.92e-07,5;UBERON:0005856,1.92e-07,5;UBERON:0005866,1.92e-07,5;UBERON:0005863,1.92e-07,5;UBERON:0007844,1.92e-07,5;UBERON:0011138,1.92e-07,5;UBERON:0001130,1.92e-07,5;UBERON:0001066,1.92e-07,5;UBERON:0001468,1.92e-07,5;UBERON:0009856,4.19e-07,26;UBERON:0001987,6.49e-07,4;UBERON:0004340,6.49e-07,4;UBERON:0005284,7.74e-07,5;UBERON:0008835,8.08e-07,22;UBERON:0003894,8.08e-07,22|phase1_expression=1.09007027562334,0.214100523890983,0.140954404095971,2.00146596706261,0.446961094427288,4.36169262050184,0,0,0,1.47440361900905,1.39560233594486,44.1251571702948,55.1272984497468,3.7129905888014,6.62794751455832,0,0,0,0,0.861847406537515,2.65200898617529,6.26909442956176,0,0.136874425072884,0.125542639594803,0.0764134057479513,0,0,0,0,1.39334510984468,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,1.73815822752988,0,0,0.661743720148475,0.443458794925128,0.175669571386252,0.589405839739707,0,0,0,0,0,0,0,0,0,0,0,0,0,0.550236083880135,0,0,0.35576626268671,0,0,0,0,0,0,0,0,0.225222960966644,0,0.949265659568129,0.183201743930407,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0.560677600142307,0,0,0.933633106199299,0.134710672069688,0,6.20565453344219,9.79499071615998,1.17160715916898,0,0,0,0,0,0,0,0.245668634623536,0,1.18800285728205,3.21447008062124,0,0,0.673344455816265,1.00094815897571,0,0,0,1.20190447125277,0.567160915800105,0,0.640672166455702,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0.0920498986422993,0.969876340912871,0,0,0.169560592310488,0,0,0,0.121973706129595,0.132529768321485,3.02104251460748,1.14027160516907,0.756962552626885,0,0,0,0,13.9310378409594,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0.8231480226628,4.41026134156626,3.80265104465493,1.96565443335525,4.13552934676983,0,29.271248373261,0,0,0,0,1.48141512253647,0.651616610620649,0,0,0.231860809950154,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336393253036082,6.10344096366592,0.4400297149257,0,0,0,0.797814349754612,0,1.54324424557285,4.25547396069835,1.5985330740966,7.14889968290738,86.2768352572394,7.40916303102692,0.325736184293735,5.33087923113819,3.16780749173372,0,0,0,0,0,0,0,0,0,2.31650090668127,3.28762116080613,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,12.7599151387905,12.0040925054323,5.42530047399471,7.07100929204744,8.02930449587228,6.30809660135739,6.55991923959194,0.300946099727719,0,2.0694614258501,0,0.553107505625109,0,71.6632236313631,80.6387045955511,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=26bp_to_BC021076_5end | |||
|coexpression_cluster_id=C172 | |||
|description=CAGE_peak_1_at_BC021076_5end | |||
|id=chr11:2153950..2153990,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;9.92e-14;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.07e-13,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!8.72e-13!347;UBERON:0000119!6.06e-11!312;UBERON:0005631!1.02e-10!14;UBERON:0000158!1.02e-10!14;UBERON:0007023!1.03e-10!115;UBERON:0000468!1.59e-10!659;UBERON:0000483!2.99e-10!309;UBERON:0000475!6.01e-10!365;UBERON:0004119!6.63e-09!169;UBERON:0000925!6.63e-09!169;UBERON:0006595!6.63e-09!169;UBERON:0000064!1.20e-08!219;UBERON:0000922!1.28e-08!612;UBERON:0000478!1.94e-08!24;UBERON:0000062!9.62e-08!511;UBERON:0003124!2.24e-07!7;UBERON:0002107!2.89e-07!19;UBERON:0006925!2.89e-07!19;UBERON:0008836!2.89e-07!19;UBERON:0002616!4.31e-07!59;UBERON:0000477!4.72e-07!286;UBERON:0002050!5.58e-07!605;UBERON:0005423!5.58e-07!605;UBERON:0005256!6.37e-07!143;UBERON:0000955!9.05e-07!69;UBERON:0006238!9.05e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.95e-13;24!UBERON:0005631;9.32e-10;10!UBERON:0000158;9.32e-10;10!UBERON:0002107;2.62e-08;19!UBERON:0006925;2.62e-08;19!UBERON:0011135;2.14e-07;5!UBERON:0002216;2.14e-07;5!UBERON:0011134;2.14e-07;5!UBERON:0002209;2.14e-07;5!UBERON:0002213;2.14e-07;5!UBERON:0007844;2.14e-07;5!UBERON:0011138;2.14e-07;5!UBERON:0001130;2.14e-07;5!UBERON:0001066;2.14e-07;5!UBERON:0001468;2.14e-07;5!UBERON:0001987;6.51e-07;4!UBERON:0005284;7.55e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,7.52e-15,14;UBERON:0000158,7.52e-15,14;UBERON:0000478,2.07e-13,24;UBERON:0003104,8.25e-13,160;UBERON:0009142,8.25e-13,160;UBERON:0003124,6.35e-11,7;UBERON:0005256,3.44e-09,122;UBERON:0004119,1.57e-08,160;UBERON:0000925,1.57e-08,160;UBERON:0006595,1.57e-08,160;UBERON:0002107,2.13e-08,19;UBERON:0006925,2.13e-08,19;UBERON:0008836,2.13e-08,19;UBERON:0001008,5.72e-08,48;UBERON:0007499,1.56e-07,25;UBERON:0006554,1.78e-07,47;UBERON:0011135,1.92e-07,5;UBERON:0002216,1.92e-07,5;UBERON:0011134,1.92e-07,5;UBERON:0002209,1.92e-07,5;UBERON:0002213,1.92e-07,5;UBERON:0005856,1.92e-07,5;UBERON:0005866,1.92e-07,5;UBERON:0005863,1.92e-07,5;UBERON:0007844,1.92e-07,5;UBERON:0011138,1.92e-07,5;UBERON:0001130,1.92e-07,5;UBERON:0001066,1.92e-07,5;UBERON:0001468,1.92e-07,5;UBERON:0009856,4.19e-07,26;UBERON:0001987,6.49e-07,4;UBERON:0004340,6.49e-07,4;UBERON:0005284,7.74e-07,5;UBERON:0008835,8.08e-07,22;UBERON:0003894,8.08e-07,22 | |||
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| |||
|short_description=p1@BC021076 | |||
}} |
Revision as of 17:12, 10 September 2013
Short description: | p1@BC021076 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC021076_5end |
Coexpression cluster: | C172_chorionic_skeletal_tongue_amniotic_liver_gastrointestinal_Pericytes |
Association with transcript: | 26bp_to_BC021076_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.07e-13 | 19 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 7.52e-15 | 14 |
membranous layer | 7.52e-15 | 14 |
extraembryonic structure | 2.07e-13 | 24 |
mesenchyme | 8.25e-13 | 160 |
entire embryonic mesenchyme | 8.25e-13 | 160 |
chorion | 6.35e-11 | 7 |
trunk mesenchyme | 3.44e-09 | 122 |
endoderm-derived structure | 1.57e-08 | 160 |
endoderm | 1.57e-08 | 160 |
presumptive endoderm | 1.57e-08 | 160 |
liver | 2.13e-08 | 19 |
digestive gland | 2.13e-08 | 19 |
liver bud | 2.13e-08 | 19 |
renal system | 5.72e-08 | 48 |
epithelial sac | 1.56e-07 | 25 |
urinary system structure | 1.78e-07 | 47 |
intervertebral cartilage | 1.92e-07 | 5 |
symphysis | 1.92e-07 | 5 |
nonsynovial joint | 1.92e-07 | 5 |
fibrous joint | 1.92e-07 | 5 |
cartilaginous joint | 1.92e-07 | 5 |
developing mesenchymal condensation | 1.92e-07 | 5 |
pre-cartilage condensation | 1.92e-07 | 5 |
cartilaginous condensation | 1.92e-07 | 5 |
cartilage element | 1.92e-07 | 5 |
post-cranial axial skeletal system | 1.92e-07 | 5 |
vertebral column | 1.92e-07 | 5 |
intervertebral disk | 1.92e-07 | 5 |
intervertebral joint | 1.92e-07 | 5 |
sac | 4.19e-07 | 26 |
placenta | 6.49e-07 | 4 |
allantois | 6.49e-07 | 4 |
brain vasculature | 7.74e-07 | 5 |
hepatic diverticulum | 8.08e-07 | 22 |
liver primordium | 8.08e-07 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.