FFCP PHASE1:Hg19::chr11:68923394..68923410,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C21|description=CAGE_peak_at_chr11:68923394..68923410,+|id=chr11:68923394..68923410,+|ontology_enrichment_celltype=CL:0000945!9.91e-35!24;CL:0000826!9.91e-35!24;CL:0000838!3.95e-26!52;CL:0000542!1.35e-25!53;CL:0000051!1.35e-25!53;CL:0000080!3.03e-14!6;CL:0002087!9.69e-14!119;CL:0002031!4.36e-13!124;CL:0000988!1.64e-12!182;CL:0000738!2.62e-11!140;CL:0000946!2.59e-10!1;CL:0000786!2.59e-10!1;CL:0000980!2.59e-10!1;CL:0000236!3.48e-10!14;CL:0002032!3.26e-09!165;CL:0000837!3.26e-09!165;CL:0000037!9.81e-09!172;CL:0000566!9.81e-09!172|ontology_enrichment_celltype_v019=CL:0000946;6.31e-21;1!CL:0000786;6.31e-21;1!CL:0000945;1.62e-13;24!CL:0000542;4.63e-07;53|ontology_enrichment_celltype_v019_2=CL:0000946,4.22e-21,1;CL:0000786,4.22e-21,1;CL:0000980,4.22e-21,1;CL:0000838,1.35e-13,52;CL:0000945,1.59e-13,24;CL:0000826,1.59e-13,24;CL:0000542,2.45e-13,53;CL:0000051,2.45e-13,53;CL:0000785,3.02e-11,2;CL:0000955,3.02e-11,2;CL:0000818,3.02e-11,2;CL:0000954,3.02e-11,2;CL:0000816,3.02e-11,2;CL:0000988,1.34e-08,177;CL:0000817,6.34e-08,3|ontology_enrichment_development_v019=CL:0000954;3.70e-11;2!CL:0000051;4.63e-07;53|ontology_enrichment_disease=DOID:630!2.37e-10!1;DOID:0050177!2.37e-10!1;DOID:0050427!2.37e-10!1;DOID:0060060!3.40e-10!1;DOID:0060061!3.40e-10!1;DOID:8691!3.40e-10!1;DOID:0060058!2.11e-08!10|ontology_enrichment_disease_v019=DOID:630;3.12e-21;1!DOID:0050177;3.12e-21;1!DOID:0050427;3.12e-21;1!DOID:0060060;6.31e-21;1!DOID:0060061;6.31e-21;1!DOID:8691;6.31e-21;1!DOID:0060058;7.96e-09;10|ontology_enrichment_disease_v019_2=DOID:630,3.45e-21,1;DOID:0050177,3.45e-21,1;DOID:0050427,3.45e-21,1;DOID:0060060,7.72e-21,1;DOID:0060061,7.72e-21,1;DOID:8691,7.72e-21,1;DOID:0060058,8.28e-09,10|ontology_enrichment_uberon=UBERON:0002106!2.00e-12!3;UBERON:0004854!2.00e-12!3;UBERON:0009034!2.00e-12!3;UBERON:0002095!2.00e-12!3;UBERON:0004782!2.00e-12!3;UBERON:0003281!2.00e-12!3;UBERON:0009664!2.00e-12!3;UBERON:0002296!2.00e-12!3;UBERON:0005602!2.00e-12!3;UBERON:0001179!2.00e-12!3;UBERON:0006293!2.00e-12!3;UBERON:0002372!1.07e-09!1;UBERON:0001961!1.07e-09!1;UBERON:0001744!1.07e-09!1;UBERON:0001735!1.07e-09!1;UBERON:0002331!9.51e-09!10;UBERON:0000358!9.51e-09!10;UBERON:0000307!9.51e-09!10;UBERON:0000091!9.51e-09!10;UBERON:0000087!9.51e-09!10;UBERON:0007806!9.51e-09!10;UBERON:0008780!9.51e-09!10;UBERON:0005728!9.51e-09!10|ontology_enrichment_uberon_v019=UBERON:0002331;8.92e-19;10!UBERON:0000178;9.45e-13;15!UBERON:0000179;9.45e-13;15!UBERON:0000463;9.45e-13;15!UBERON:0002390;3.58e-10;32!UBERON:0000478;3.37e-08;24!UBERON:0002106;7.26e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0002331,8.92e-19,10;UBERON:0000358,8.92e-19,10;UBERON:0000307,8.92e-19,10;UBERON:0000091,8.92e-19,10;UBERON:0000087,8.92e-19,10;UBERON:0007010,8.92e-19,10;UBERON:0007806,8.92e-19,10;UBERON:0008780,8.92e-19,10;UBERON:0005728,8.92e-19,10;UBERON:0000178,9.45e-13,15;UBERON:0000179,9.45e-13,15;UBERON:0000463,9.45e-13,15;UBERON:0000478,3.37e-08,24;UBERON:0002106,7.26e-08,3;UBERON:0004854,7.26e-08,3;UBERON:0009034,7.26e-08,3;UBERON:0002095,7.26e-08,3;UBERON:0004782,7.26e-08,3;UBERON:0003281,7.26e-08,3;UBERON:0009664,7.26e-08,3;UBERON:0002296,7.26e-08,3;UBERON:0005602,7.26e-08,3;UBERON:0001179,7.26e-08,3;UBERON:0006293,7.26e-08,3|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37544130346312,1.06730766284929,0.708397031823113,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.1286480370885,12.4799578335968,8.87586570796371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89176089707246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19992437512958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84374380089247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,1.29923502702408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,2.8851164307291|short_description=p@chr11:68923394..68923410,+}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C21 | |||
|description=CAGE_peak_at_chr11:68923394..68923410,+ | |||
|id=chr11:68923394..68923410,+ | |||
|ontology_enrichment_celltype=CL:0000945!9.91e-35!24;CL:0000826!9.91e-35!24;CL:0000838!3.95e-26!52;CL:0000542!1.35e-25!53;CL:0000051!1.35e-25!53;CL:0000080!3.03e-14!6;CL:0002087!9.69e-14!119;CL:0002031!4.36e-13!124;CL:0000988!1.64e-12!182;CL:0000738!2.62e-11!140;CL:0000946!2.59e-10!1;CL:0000786!2.59e-10!1;CL:0000980!2.59e-10!1;CL:0000236!3.48e-10!14;CL:0002032!3.26e-09!165;CL:0000837!3.26e-09!165;CL:0000037!9.81e-09!172;CL:0000566!9.81e-09!172 | |||
|ontology_enrichment_celltype_v019=CL:0000946;6.31e-21;1!CL:0000786;6.31e-21;1!CL:0000945;1.62e-13;24!CL:0000542;4.63e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000946,4.22e-21,1;CL:0000786,4.22e-21,1;CL:0000980,4.22e-21,1;CL:0000838,1.35e-13,52;CL:0000945,1.59e-13,24;CL:0000826,1.59e-13,24;CL:0000542,2.45e-13,53;CL:0000051,2.45e-13,53;CL:0000785,3.02e-11,2;CL:0000955,3.02e-11,2;CL:0000818,3.02e-11,2;CL:0000954,3.02e-11,2;CL:0000816,3.02e-11,2;CL:0000988,1.34e-08,177;CL:0000817,6.34e-08,3 | |||
|ontology_enrichment_development_v019=CL:0000954;3.70e-11;2!CL:0000051;4.63e-07;53 | |||
|ontology_enrichment_disease=DOID:630!2.37e-10!1;DOID:0050177!2.37e-10!1;DOID:0050427!2.37e-10!1;DOID:0060060!3.40e-10!1;DOID:0060061!3.40e-10!1;DOID:8691!3.40e-10!1;DOID:0060058!2.11e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:630;3.12e-21;1!DOID:0050177;3.12e-21;1!DOID:0050427;3.12e-21;1!DOID:0060060;6.31e-21;1!DOID:0060061;6.31e-21;1!DOID:8691;6.31e-21;1!DOID:0060058;7.96e-09;10 | |||
|ontology_enrichment_disease_v019_2=DOID:630,3.45e-21,1;DOID:0050177,3.45e-21,1;DOID:0050427,3.45e-21,1;DOID:0060060,7.72e-21,1;DOID:0060061,7.72e-21,1;DOID:8691,7.72e-21,1;DOID:0060058,8.28e-09,10 | |||
|ontology_enrichment_uberon=UBERON:0002106!2.00e-12!3;UBERON:0004854!2.00e-12!3;UBERON:0009034!2.00e-12!3;UBERON:0002095!2.00e-12!3;UBERON:0004782!2.00e-12!3;UBERON:0003281!2.00e-12!3;UBERON:0009664!2.00e-12!3;UBERON:0002296!2.00e-12!3;UBERON:0005602!2.00e-12!3;UBERON:0001179!2.00e-12!3;UBERON:0006293!2.00e-12!3;UBERON:0002372!1.07e-09!1;UBERON:0001961!1.07e-09!1;UBERON:0001744!1.07e-09!1;UBERON:0001735!1.07e-09!1;UBERON:0002331!9.51e-09!10;UBERON:0000358!9.51e-09!10;UBERON:0000307!9.51e-09!10;UBERON:0000091!9.51e-09!10;UBERON:0000087!9.51e-09!10;UBERON:0007806!9.51e-09!10;UBERON:0008780!9.51e-09!10;UBERON:0005728!9.51e-09!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002331;8.92e-19;10!UBERON:0000178;9.45e-13;15!UBERON:0000179;9.45e-13;15!UBERON:0000463;9.45e-13;15!UBERON:0002390;3.58e-10;32!UBERON:0000478;3.37e-08;24!UBERON:0002106;7.26e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002331,8.92e-19,10;UBERON:0000358,8.92e-19,10;UBERON:0000307,8.92e-19,10;UBERON:0000091,8.92e-19,10;UBERON:0000087,8.92e-19,10;UBERON:0007010,8.92e-19,10;UBERON:0007806,8.92e-19,10;UBERON:0008780,8.92e-19,10;UBERON:0005728,8.92e-19,10;UBERON:0000178,9.45e-13,15;UBERON:0000179,9.45e-13,15;UBERON:0000463,9.45e-13,15;UBERON:0000478,3.37e-08,24;UBERON:0002106,7.26e-08,3;UBERON:0004854,7.26e-08,3;UBERON:0009034,7.26e-08,3;UBERON:0002095,7.26e-08,3;UBERON:0004782,7.26e-08,3;UBERON:0003281,7.26e-08,3;UBERON:0009664,7.26e-08,3;UBERON:0002296,7.26e-08,3;UBERON:0005602,7.26e-08,3;UBERON:0001179,7.26e-08,3;UBERON:0006293,7.26e-08,3 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37544130346312,1.06730766284929,0.708397031823113,0,0,0,0,0,0,0,0.142169232487422,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984678443688556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,23.1286480370885,12.4799578335968,8.87586570796371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.89176089707246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19992437512958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.84374380089247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,1.29923502702408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,2.8851164307291 | |||
|short_description=p@chr11:68923394..68923410,+ | |||
}} |
Revision as of 19:22, 10 September 2013
Short description: | p@chr11:68923394..68923410, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr11:68923394..68923410, + |
Coexpression cluster: | C21_cord_mycosis_hairy_xeroderma_adult_CD4_anaplastic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
antibody secreting cell | 4.22e-21 | 1 |
plasma cell | 4.22e-21 | 1 |
plasmablast | 4.22e-21 | 1 |
lymphoid lineage restricted progenitor cell | 1.35e-13 | 52 |
lymphocyte of B lineage | 1.59e-13 | 24 |
pro-B cell | 1.59e-13 | 24 |
lymphocyte | 2.45e-13 | 53 |
common lymphoid progenitor | 2.45e-13 | 53 |
mature B cell | 3.02e-11 | 2 |
pre-B-II cell | 3.02e-11 | 2 |
transitional stage B cell | 3.02e-11 | 2 |
small pre-B-II cell | 3.02e-11 | 2 |
immature B cell | 3.02e-11 | 2 |
hematopoietic cell | 1.34e-08 | 177 |
precursor B cell | 6.34e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
umbilical cord | 8.92e-19 | 10 |
blastocyst | 8.92e-19 | 10 |
blastula | 8.92e-19 | 10 |
bilaminar disc | 8.92e-19 | 10 |
inner cell mass | 8.92e-19 | 10 |
cleaving embryo | 8.92e-19 | 10 |
connecting stalk | 8.92e-19 | 10 |
inner cell mass derived epiblast | 8.92e-19 | 10 |
extraembryonic mesoderm | 8.92e-19 | 10 |
blood | 9.45e-13 | 15 |
haemolymphatic fluid | 9.45e-13 | 15 |
organism substance | 9.45e-13 | 15 |
extraembryonic structure | 3.37e-08 | 24 |
spleen | 7.26e-08 | 3 |
gastrointestinal system mesentery | 7.26e-08 | 3 |
stomach region | 7.26e-08 | 3 |
mesentery | 7.26e-08 | 3 |
gastrointestinal system serosa | 7.26e-08 | 3 |
mesentery of stomach | 7.26e-08 | 3 |
gut mesentery | 7.26e-08 | 3 |
dorsal mesentery | 7.26e-08 | 3 |
dorsal mesogastrium | 7.26e-08 | 3 |
peritoneal cavity | 7.26e-08 | 3 |
spleen primordium | 7.26e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 3.45e-21 | 1 |
monogenic disease | 3.45e-21 | 1 |
xeroderma pigmentosum | 3.45e-21 | 1 |
non-Hodgkin lymphoma | 7.72e-21 | 1 |
cutaneous T cell lymphoma | 7.72e-21 | 1 |
mycosis fungoides | 7.72e-21 | 1 |
lymphoma | 8.28e-09 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.