FFCP PHASE1:Hg19::chr12:52558588..52558622,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C50|description=CAGE_peak_at_chr12:52558588..52558622,+|id=chr12:52558588..52558622,+|ontology_enrichment_celltype=CL:0000039!8.83e-18!7;CL:0000586!8.83e-18!7;CL:0000066!1.21e-16!254;CL:0002541!1.37e-12!3;CL:0002076!5.47e-11!43;CL:0000244!8.40e-09!4;CL:0000731!8.40e-09!4;CL:0000223!1.28e-08!59;CL:1000415!8.06e-08!2;CL:0002251!1.54e-07!21|ontology_enrichment_celltype_v019=CL:0002541;4.48e-44;3!CL:0000349;1.88e-12;19!CL:0000039;4.38e-09;7!CL:0000586;4.38e-09;7|ontology_enrichment_celltype_v019_2=CL:0002541,4.49e-44,3;CL:0000349,1.77e-12,19;CL:0000039,4.57e-09,7;CL:0000586,4.57e-09,7|ontology_enrichment_development_v019=UBERON:0003124;2.06e-15;1!UBERON:0008814;2.31e-08;2!UBERON:0010056;2.31e-08;2|ontology_enrichment_disease=DOID:305!2.70e-22!106;DOID:0050687!3.45e-17!143;DOID:1749!5.99e-12!14;DOID:162!1.36e-10!235;DOID:14566!3.36e-10!239;DOID:4468!6.77e-08!2;DOID:3095!7.58e-07!22;DOID:2994!7.58e-07!22|ontology_enrichment_disease_v019=DOID:1749;2.29e-16;14!DOID:4074;1.50e-08;2!DOID:4905;1.50e-08;2!DOID:3498;1.50e-08;2!DOID:4929;2.31e-08;2|ontology_enrichment_disease_v019_2=DOID:1749,2.48e-16,14;DOID:4074,1.50e-08,2;DOID:4905,1.50e-08,2;DOID:3498,1.50e-08,2;DOID:4929,2.87e-08,2|ontology_enrichment_uberon=UBERON:0003343!5.18e-15!4;UBERON:0004785!5.18e-15!4;UBERON:0000476!1.37e-12!3;UBERON:0000920!1.37e-12!3;UBERON:0003729!5.10e-12!5;UBERON:0004119!2.43e-09!169;UBERON:0000925!2.43e-09!169;UBERON:0006595!2.43e-09!169;UBERON:0003124!3.28e-09!7;UBERON:0003101!7.00e-09!22;UBERON:0000079!7.00e-09!22;UBERON:0002294!2.25e-08!7;UBERON:0001173!2.25e-08!7;UBERON:0004912!2.25e-08!7;UBERON:0005911!2.77e-08!82;UBERON:0000161!3.42e-08!35;UBERON:0000344!2.55e-07!12;UBERON:0000473!2.82e-07!8;UBERON:0005156!3.32e-07!59;UBERON:0000990!3.32e-07!59;UBERON:0000365!4.09e-07!5;UBERON:0005631!9.52e-07!14;UBERON:0000158!9.52e-07!14|ontology_enrichment_uberon_v019=UBERON:0003124;4.48e-44;3!UBERON:0000920;4.48e-44;3!UBERON:0005631;2.37e-23;10!UBERON:0000158;2.37e-23;10!UBERON:0000997;2.06e-15;1!UBERON:0004913;2.06e-15;1!UBERON:0005056;2.06e-15;1!UBERON:0003703;2.06e-15;1!UBERON:0004176;2.06e-15;1!UBERON:0001174;2.06e-15;1!UBERON:0004914;2.06e-15;1!UBERON:0003343;4.88e-15;4!UBERON:0004785;4.88e-15;4!UBERON:0000478;5.86e-15;24!UBERON:0000974;2.40e-10;6|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.49e-44,3;UBERON:0003124,2.60e-33,7;UBERON:0005631,1.02e-25,14;UBERON:0000158,1.02e-25,14;UBERON:0000997,2.75e-15,1;UBERON:0005056,2.75e-15,1;UBERON:0004913,3.17e-15,1;UBERON:0003703,3.17e-15,1;UBERON:0001174,3.17e-15,1;UBERON:0004914,3.17e-15,1;UBERON:0000478,4.91e-15,24;UBERON:0003343,6.04e-15,4;UBERON:0004785,6.04e-15,4;UBERON:0004923,4.07e-10,66|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.435758888184812,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90995587790152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42345639906385,0.108647371922008,11.1650405906172,17.4035427463538,45.8409907376026,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,4.50028623543806,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,1.46988596121566,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C50 | |||
|description=CAGE_peak_at_chr12:52558588..52558622,+ | |||
|id=chr12:52558588..52558622,+ | |||
|ontology_enrichment_celltype=CL:0000039!8.83e-18!7;CL:0000586!8.83e-18!7;CL:0000066!1.21e-16!254;CL:0002541!1.37e-12!3;CL:0002076!5.47e-11!43;CL:0000244!8.40e-09!4;CL:0000731!8.40e-09!4;CL:0000223!1.28e-08!59;CL:1000415!8.06e-08!2;CL:0002251!1.54e-07!21 | |||
|ontology_enrichment_celltype_v019=CL:0002541;4.48e-44;3!CL:0000349;1.88e-12;19!CL:0000039;4.38e-09;7!CL:0000586;4.38e-09;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,4.49e-44,3;CL:0000349,1.77e-12,19;CL:0000039,4.57e-09,7;CL:0000586,4.57e-09,7 | |||
|ontology_enrichment_development_v019=UBERON:0003124;2.06e-15;1!UBERON:0008814;2.31e-08;2!UBERON:0010056;2.31e-08;2 | |||
|ontology_enrichment_disease=DOID:305!2.70e-22!106;DOID:0050687!3.45e-17!143;DOID:1749!5.99e-12!14;DOID:162!1.36e-10!235;DOID:14566!3.36e-10!239;DOID:4468!6.77e-08!2;DOID:3095!7.58e-07!22;DOID:2994!7.58e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:1749;2.29e-16;14!DOID:4074;1.50e-08;2!DOID:4905;1.50e-08;2!DOID:3498;1.50e-08;2!DOID:4929;2.31e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,2.48e-16,14;DOID:4074,1.50e-08,2;DOID:4905,1.50e-08,2;DOID:3498,1.50e-08,2;DOID:4929,2.87e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0003343!5.18e-15!4;UBERON:0004785!5.18e-15!4;UBERON:0000476!1.37e-12!3;UBERON:0000920!1.37e-12!3;UBERON:0003729!5.10e-12!5;UBERON:0004119!2.43e-09!169;UBERON:0000925!2.43e-09!169;UBERON:0006595!2.43e-09!169;UBERON:0003124!3.28e-09!7;UBERON:0003101!7.00e-09!22;UBERON:0000079!7.00e-09!22;UBERON:0002294!2.25e-08!7;UBERON:0001173!2.25e-08!7;UBERON:0004912!2.25e-08!7;UBERON:0005911!2.77e-08!82;UBERON:0000161!3.42e-08!35;UBERON:0000344!2.55e-07!12;UBERON:0000473!2.82e-07!8;UBERON:0005156!3.32e-07!59;UBERON:0000990!3.32e-07!59;UBERON:0000365!4.09e-07!5;UBERON:0005631!9.52e-07!14;UBERON:0000158!9.52e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;4.48e-44;3!UBERON:0000920;4.48e-44;3!UBERON:0005631;2.37e-23;10!UBERON:0000158;2.37e-23;10!UBERON:0000997;2.06e-15;1!UBERON:0004913;2.06e-15;1!UBERON:0005056;2.06e-15;1!UBERON:0003703;2.06e-15;1!UBERON:0004176;2.06e-15;1!UBERON:0001174;2.06e-15;1!UBERON:0004914;2.06e-15;1!UBERON:0003343;4.88e-15;4!UBERON:0004785;4.88e-15;4!UBERON:0000478;5.86e-15;24!UBERON:0000974;2.40e-10;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,4.49e-44,3;UBERON:0003124,2.60e-33,7;UBERON:0005631,1.02e-25,14;UBERON:0000158,1.02e-25,14;UBERON:0000997,2.75e-15,1;UBERON:0005056,2.75e-15,1;UBERON:0004913,3.17e-15,1;UBERON:0003703,3.17e-15,1;UBERON:0001174,3.17e-15,1;UBERON:0004914,3.17e-15,1;UBERON:0000478,4.91e-15,24;UBERON:0003343,6.04e-15,4;UBERON:0004785,6.04e-15,4;UBERON:0004923,4.07e-10,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0,0.286804595389004,0.121973706129595,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0.168584690078102,0,0,0.435758888184812,0.237270619111097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0.43050537267123,1.68471475667626,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.280797178113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90995587790152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449341755736634,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42345639906385,0.108647371922008,11.1650405906172,17.4035427463538,45.8409907376026,0,0,0,0,0,0,0,0,0.421996129056054,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,4.50028623543806,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,1.46988596121566,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,0,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171086837884329,0,0,0,0,0,0,0,1.91502377331055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.470531639396343,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226705925512272,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211312123358627,0,0,0,0,0,0,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.76665893301846,0.825788063434183,0.183428598521679,1.03973099535304,0,0,0,0,0,0,0,0,1.18284868973636,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,1.95145214357805,0,0,0,0,0.236387681767936,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109265571963696,0,0.203977659483963,0.26721740526556,1.56221329209236,0.250707539292375,0,0,0,0,0,0,0,0,0.33639558774184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:52558588..52558622,+ | |||
}} |
Revision as of 23:06, 10 September 2013
Short description: | p@chr12:52558588..52558622, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:52558588..52558622, + |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 4.49e-44 | 3 |
extraembryonic cell | 1.77e-12 | 19 |
germ line cell | 4.57e-09 | 7 |
germ cell | 4.57e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 4.49e-44 | 3 |
chorion | 2.60e-33 | 7 |
extraembryonic membrane | 1.02e-25 | 14 |
membranous layer | 1.02e-25 | 14 |
mammalian vulva | 2.75e-15 | 1 |
external female genitalia | 2.75e-15 | 1 |
hepatopancreatic ampulla | 3.17e-15 | 1 |
extrahepatic bile duct | 3.17e-15 | 1 |
common bile duct | 3.17e-15 | 1 |
duodenal papilla | 3.17e-15 | 1 |
extraembryonic structure | 4.91e-15 | 24 |
mucosa of oral region | 6.04e-15 | 4 |
respiratory system mucosa | 6.04e-15 | 4 |
organ component layer | 4.07e-10 | 66 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.48e-16 | 14 |
pancreas adenocarcinoma | 1.50e-08 | 2 |
pancreatic carcinoma | 1.50e-08 | 2 |
pancreatic ductal adenocarcinoma | 1.50e-08 | 2 |
tubular adenocarcinoma | 2.87e-08 | 2 |
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