FFCP PHASE1:Hg19::chr12:54379136..54379150,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3222|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=5127|TSSclassifier=S|UniProt=|association_with_transcript=-478bp_to_ENST00000513209_5end|description=CAGE_peak_4_at_HOXC5_5end|id=chr12:54379136..54379150,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:1000507;3.01e-11;10!CL:1000494;3.01e-11;10!CL:1000497;6.43e-08;17!CL:0002518;6.43e-08;17!CL:1000449;4.00e-07;15|ontology_enrichment_celltype_v019_2=CL:1000507,2.79e-11,10;CL:1000494,2.79e-11,10;CL:1000497,6.49e-08,17;CL:0002518,6.49e-08,17;CL:0000066,8.73e-08,253;CL:1000449,3.82e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:0050687!1.99e-18!143;DOID:14566!2.11e-11!239;DOID:162!3.20e-11!235;DOID:305!1.00e-10!106|ontology_enrichment_disease_v019=DOID:4362;1.71e-08;5|ontology_enrichment_disease_v019_2=DOID:0050687,5.54e-14,143;DOID:305,3.01e-10,106;DOID:4362,2.16e-08,5;DOID:162,2.98e-08,235;DOID:14566,7.12e-08,239|ontology_enrichment_uberon=UBERON:0001737!6.08e-12!9;UBERON:0002199!1.76e-07!45;UBERON:0002416!1.76e-07!45;UBERON:0002113!7.14e-07!27;UBERON:0003918!7.14e-07!27;UBERON:0005095!7.14e-07!27;UBERON:0007687!7.14e-07!27|ontology_enrichment_uberon_v019=UBERON:0001737;1.09e-22;9!UBERON:0001557;1.09e-22;9!UBERON:0004211;3.01e-11;10!UBERON:0009773;3.01e-11;10!UBERON:0001231;3.01e-11;10!UBERON:0004810;3.01e-11;10!UBERON:0002113;8.91e-10;24!UBERON:0011143;8.91e-10;24!UBERON:0000489;3.34e-09;29!UBERON:0006554;2.35e-07;30!UBERON:0001008;2.35e-07;30!UBERON:0006555;4.00e-07;15!UBERON:0004819;4.00e-07;15!UBERON:0001285;4.00e-07;15!UBERON:0007684;4.00e-07;15!UBERON:0000002;4.60e-07;6!UBERON:0001560;4.60e-07;6!UBERON:0001474;5.27e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.41e-23,9;UBERON:0004810,2.79e-11,10;UBERON:0001557,8.00e-10,19;UBERON:0002113,6.75e-09,26;UBERON:0003918,6.75e-09,26;UBERON:0011143,6.75e-09,26;UBERON:0005095,6.75e-09,26;UBERON:0007687,6.75e-09,26;UBERON:0000489,1.53e-08,31;UBERON:0004211,3.82e-07,15;UBERON:0009773,3.82e-07,15;UBERON:0001231,3.82e-07,15;UBERON:0001285,3.82e-07,15;UBERON:0007684,3.82e-07,15;UBERON:0004208,3.82e-07,15;UBERON:0000002,5.58e-07,6;UBERON:0001560,5.58e-07,6|phase1_expression=0,0.214100523890983,0,1.0007329835313,0,0,2.53299878168311,0.631719873426831,0.261185628199839,0,0,0,0,0.37129905888014,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44575660953827,0.50133791063589,0.579386075843295,0,0.973269740605272,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0.993943903390637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.64393548606981,0.704606991862589,0.485618833104395,0.421352420106746,0,0,0,0,0,6.37112953356618,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,1.48893485065272,0.675105328965065,0.779496041289589,0,0,0,0,0,1.01736355386293,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19428360107579,3.54027849164014,2.16909926895134,3.74999507290139,2.61455332910887,3.55905928666645,1.8876383142423,2.74710051175484,3.07797725557112,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,2.01057944823262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0.571481048629521,1.14596527667483,1.17217447210047,0,0,1.50171528921959,2.28661146104463,0,0,0,0.387815147273333,0,0,0,0,1.54324424557285,0,1.3321108950805,0,1.62786481617433,1.64648067356154,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0.868687840005475,0.61642896765115,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0.858840442033979,1.50051156317903,0.542530047399471,0,0,0,0,0,0,0,3.32112799267718,0,0.173767228936166,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0.308419387605311,0.532685175939381,0.246381468041427,0,1.16210378459959,0,0,0,0,0,0,1.35359883872224,0.15403067420883,3.92174884588428,1.46139224653261,0.422206515571503,0,0,0.215915916102139,0,1.35473218771926,3.01013864312912,1.52925763827023,0,2.23874754722178,0,0,0,0,0,0,0.732555718546747,0.495056999523528,2.29706215198469,1.95018073810956,0,0.773365746336976,0,0,0.137836572484531,0.537101224341368,0.725083469571143,0.340906509664404,0.445160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.62328301570163,0.6196469961995,1.12678241012897,1.72093622644862,0.687743287091848,2.49669736036875,0,0.844430541190656,0.329294892959902,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,1.92283328029452,0.962479855263359,1.71528151186722,0,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586164286206121,0,0,0,0,0,2.43282702530686,0.146508179271894,1.33496573924465,0,0.852408440419239,0,0,0,0,0,0,0,0.844501632511974,0.19924798825107,0,2.01546198283421,0,0,0,0,0,0,0,0,1.11136990144637,0,0,0,0,2.62379999988587,0,0,0,0.709163045303809,0,0.583209226766509,0.347249989866585,0,0,0,0,0,0,2.72346158797475,3.62501735124369,0.0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3222 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5127 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-478bp_to_ENST00000513209_5end | |||
|description=CAGE_peak_4_at_HOXC5_5end | |||
|id=chr12:54379136..54379150,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000507;3.01e-11;10!CL:1000494;3.01e-11;10!CL:1000497;6.43e-08;17!CL:0002518;6.43e-08;17!CL:1000449;4.00e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,2.79e-11,10;CL:1000494,2.79e-11,10;CL:1000497,6.49e-08,17;CL:0002518,6.49e-08,17;CL:0000066,8.73e-08,253;CL:1000449,3.82e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!1.99e-18!143;DOID:14566!2.11e-11!239;DOID:162!3.20e-11!235;DOID:305!1.00e-10!106 | |||
|ontology_enrichment_disease_v019=DOID:4362;1.71e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,5.54e-14,143;DOID:305,3.01e-10,106;DOID:4362,2.16e-08,5;DOID:162,2.98e-08,235;DOID:14566,7.12e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0001737!6.08e-12!9;UBERON:0002199!1.76e-07!45;UBERON:0002416!1.76e-07!45;UBERON:0002113!7.14e-07!27;UBERON:0003918!7.14e-07!27;UBERON:0005095!7.14e-07!27;UBERON:0007687!7.14e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.09e-22;9!UBERON:0001557;1.09e-22;9!UBERON:0004211;3.01e-11;10!UBERON:0009773;3.01e-11;10!UBERON:0001231;3.01e-11;10!UBERON:0004810;3.01e-11;10!UBERON:0002113;8.91e-10;24!UBERON:0011143;8.91e-10;24!UBERON:0000489;3.34e-09;29!UBERON:0006554;2.35e-07;30!UBERON:0001008;2.35e-07;30!UBERON:0006555;4.00e-07;15!UBERON:0004819;4.00e-07;15!UBERON:0001285;4.00e-07;15!UBERON:0007684;4.00e-07;15!UBERON:0000002;4.60e-07;6!UBERON:0001560;4.60e-07;6!UBERON:0001474;5.27e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.41e-23,9;UBERON:0004810,2.79e-11,10;UBERON:0001557,8.00e-10,19;UBERON:0002113,6.75e-09,26;UBERON:0003918,6.75e-09,26;UBERON:0011143,6.75e-09,26;UBERON:0005095,6.75e-09,26;UBERON:0007687,6.75e-09,26;UBERON:0000489,1.53e-08,31;UBERON:0004211,3.82e-07,15;UBERON:0009773,3.82e-07,15;UBERON:0001231,3.82e-07,15;UBERON:0001285,3.82e-07,15;UBERON:0007684,3.82e-07,15;UBERON:0004208,3.82e-07,15;UBERON:0000002,5.58e-07,6;UBERON:0001560,5.58e-07,6 | |||
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|short_description=p4@HOXC5 | |||
}} |
Revision as of 23:20, 10 September 2013
Short description: | p4@HOXC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_HOXC5_5end |
Coexpression cluster: | NA |
Association with transcript: | -478bp_to_ENST00000513209_5end |
EntrezGene: | HOXC5 |
HGNC: | 5127 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 2.79e-11 | 10 |
nephron tubule epithelial cell | 2.79e-11 | 10 |
kidney cell | 6.49e-08 | 17 |
kidney epithelial cell | 6.49e-08 | 17 |
epithelial cell | 8.73e-08 | 253 |
epithelial cell of nephron | 3.82e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.41e-23 | 9 |
nephron tubule epithelium | 2.79e-11 | 10 |
upper respiratory tract | 8.00e-10 | 19 |
kidney | 6.75e-09 | 26 |
kidney mesenchyme | 6.75e-09 | 26 |
upper urinary tract | 6.75e-09 | 26 |
kidney rudiment | 6.75e-09 | 26 |
kidney field | 6.75e-09 | 26 |
cavitated compound organ | 1.53e-08 | 31 |
nephron epithelium | 3.82e-07 | 15 |
renal tubule | 3.82e-07 | 15 |
nephron tubule | 3.82e-07 | 15 |
nephron | 3.82e-07 | 15 |
uriniferous tubule | 3.82e-07 | 15 |
nephrogenic mesenchyme | 3.82e-07 | 15 |
uterine cervix | 5.58e-07 | 6 |
neck of organ | 5.58e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 5.54e-14 | 143 |
carcinoma | 3.01e-10 | 106 |
cervical cancer | 2.16e-08 | 5 |
cancer | 2.98e-08 | 235 |
disease of cellular proliferation | 7.12e-08 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.