FFCP PHASE1:Hg19::chr12:6960159..6960181,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=83461|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=14624|TSSclassifier=W|UniProt=|association_with_transcript=240bp_to_ENST00000535406_5end|coexpression_cluster_id=C25|description=CAGE_peak_3_at_CDCA3_5end|id=chr12:6960159..6960181,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0002563;2.85e-14;4!CL:0000039;1.92e-08;7!CL:0000586;1.92e-08;7!CL:0002253;4.53e-08;2!CL:0002262;7.03e-08;2!CL:1000398;7.03e-08;2|ontology_enrichment_celltype_v019_2=CL:0002563,2.95e-14,4;CL:0000039,1.85e-08,7;CL:0000586,1.85e-08,7;CL:0002253,4.69e-08,2;CL:0002262,5.74e-08,2;CL:1000398,5.74e-08,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0000160;1.06e-35;17!UBERON:0005409;7.35e-28;22!UBERON:0002108;8.00e-25;4!UBERON:0004921;1.69e-17;33!UBERON:0001242;2.85e-14;4!UBERON:0001262;2.85e-14;4!UBERON:0004786;2.85e-14;4!UBERON:0004808;2.85e-14;4!UBERON:0001277;2.85e-14;4!UBERON:0001155;5.64e-14;9!UBERON:0000059;1.52e-11;11!UBERON:0000485;1.50e-08;7!UBERON:0003929;1.50e-08;7!UBERON:0003513;1.92e-08;7!UBERON:0001281;7.03e-08;2!UBERON:0003497;7.03e-08;2!UBERON:0003909;7.03e-08;2!UBERON:0003835;7.03e-08;2!UBERON:0003350;1.38e-07;8!UBERON:0001555;1.60e-07;54|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.08e-36,17;UBERON:0002108,5.80e-25,4;UBERON:0005409,1.21e-24,25;UBERON:0001242,2.95e-14,4;UBERON:0001262,2.95e-14,4;UBERON:0004786,2.95e-14,4;UBERON:0004808,2.95e-14,4;UBERON:0001277,2.95e-14,4;UBERON:0001155,5.90e-14,9;UBERON:0000059,1.58e-11,11;UBERON:0003513,1.99e-08,7;UBERON:0001281,5.74e-08,2;UBERON:0003497,5.74e-08,2;UBERON:0003909,5.74e-08,2;UBERON:0003835,5.74e-08,2;UBERON:0003350,1.40e-07,8;UBERON:0000485,7.87e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,2.09340350391728,0.436882744260345,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0.136874425072884,0.125542639594803,0,0,0.0787107813136792,0,0,0,0.919421224478927,0.30120591877825,0,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0.735326160691737,0,0.17859945656816,0.673588117878509,0.112611480483322,0,0,0,0,0,0,0,0.25326102332916,0,0.286836620748814,0.354668382198357,0,0,0,0.311211035399766,0,0.653847612453835,0,0,0,0,0,0,0.117434498643765,0.323745888736263,0.280901613404497,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0.30648779579902,0.300476117813194,0.226864366320042,0.179389635688862,0,0.211931901159562,0.300091096084402,0,0,0,0.168776332241266,0.0974370051611986,0,0,0,0,0.403008392910561,0.508681776931463,0,0,0,0,0,0.232387885739037,0,0.252320850875628,0.72995471815166,0,0,0,0,0,0.236613600079688,0.337169380156203,0,0,0.435758888184812,0,0,0,0,0,1.40241773803446,0,0,0,0,0,0,1.35287282397425,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0.383382679165211,0,0,0,0,0,0,0.381988425558278,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0.823240336780769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0,0,0,0,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0,0,0,0.606255142892519,0,0,0,0,0,0.128139149255701,0,0,0,0.154209693802656,0,0,0,0.116210378459959,0.483437798366489,0,0,0.229628896329213,0.546273504020151,0,0,0.15403067420883,0,0,0.105551628892876,0,0.170093705276516,0,0,0,0,0,0,0,0.438519753291869,0.522870902049801,0,0,0,0,0,0,0.574265537996172,0,0,0,0.154048617114644,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0,0,0.409499734223957,0,0,1.10273068709225,0.66343897524122,0,0,0,0,0.30982349809975,1.12678241012897,0,0,0.35667105148125,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0.270455678475983,0.33307196799782,0,0.561421621224659,0.146508179271894,0,0,0,0,0.296964680832639,0,0,0,0.111308705022906,0,0.211125408127993,0,0,0,0.102268682502155,0.246169610922139,0,0.539210106883961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,1.38338342632836,1.34636466614658,0.217294743844016,0,0.183195186803725,0,0,0,0,0.451191321234361,0.588187602953219,0.839107934879214,0.189753732724185,0,0,0,2.40300221437699,0,0.995261931078505,2.65372693510018,1.22206028986725,0.296521128680622,0,0,0,0,0,0,0.391329237864179,0.242780379534093,0,2.41981432097328,0,0,1.35291077473043,0.103688191397247,0,0,0,0,0,0,0.173559738335131,0,0,0,0,0.290268993867255,0,0,0,0.0882561266915003,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=83461 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14624 | |||
|TSSclassifier=W | |||
|UniProt= | |||
|association_with_transcript=240bp_to_ENST00000535406_5end | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_3_at_CDCA3_5end | |||
|id=chr12:6960159..6960181,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.85e-14;4!CL:0000039;1.92e-08;7!CL:0000586;1.92e-08;7!CL:0002253;4.53e-08;2!CL:0002262;7.03e-08;2!CL:1000398;7.03e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.95e-14,4;CL:0000039,1.85e-08,7;CL:0000586,1.85e-08,7;CL:0002253,4.69e-08,2;CL:0002262,5.74e-08,2;CL:1000398,5.74e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.06e-35;17!UBERON:0005409;7.35e-28;22!UBERON:0002108;8.00e-25;4!UBERON:0004921;1.69e-17;33!UBERON:0001242;2.85e-14;4!UBERON:0001262;2.85e-14;4!UBERON:0004786;2.85e-14;4!UBERON:0004808;2.85e-14;4!UBERON:0001277;2.85e-14;4!UBERON:0001155;5.64e-14;9!UBERON:0000059;1.52e-11;11!UBERON:0000485;1.50e-08;7!UBERON:0003929;1.50e-08;7!UBERON:0003513;1.92e-08;7!UBERON:0001281;7.03e-08;2!UBERON:0003497;7.03e-08;2!UBERON:0003909;7.03e-08;2!UBERON:0003835;7.03e-08;2!UBERON:0003350;1.38e-07;8!UBERON:0001555;1.60e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.08e-36,17;UBERON:0002108,5.80e-25,4;UBERON:0005409,1.21e-24,25;UBERON:0001242,2.95e-14,4;UBERON:0001262,2.95e-14,4;UBERON:0004786,2.95e-14,4;UBERON:0004808,2.95e-14,4;UBERON:0001277,2.95e-14,4;UBERON:0001155,5.90e-14,9;UBERON:0000059,1.58e-11,11;UBERON:0003513,1.99e-08,7;UBERON:0001281,5.74e-08,2;UBERON:0003497,5.74e-08,2;UBERON:0003909,5.74e-08,2;UBERON:0003835,5.74e-08,2;UBERON:0003350,1.40e-07,8;UBERON:0000485,7.87e-07,9 | |||
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|short_description=p3@CDCA3 | |||
}} |
Revision as of 00:10, 11 September 2013
Short description: | p3@CDCA3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_CDCA3_5end |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | 240bp_to_ENST00000535406_5end |
EntrezGene: | CDCA3 |
HGNC: | 14624 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.95e-14 | 4 |
germ line cell | 1.85e-08 | 7 |
germ cell | 1.85e-08 | 7 |
epithelial cell of large intestine | 4.69e-08 | 2 |
endothelial cell of sinusoid | 5.74e-08 | 2 |
endothelial cell of hepatic sinusoid | 5.74e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 9.08e-36 | 17 |
small intestine | 5.80e-25 | 4 |
gastrointestinal system | 1.21e-24 | 25 |
intestinal mucosa | 2.95e-14 | 4 |
wall of intestine | 2.95e-14 | 4 |
gastrointestinal system mucosa | 2.95e-14 | 4 |
gastrointestinal system epithelium | 2.95e-14 | 4 |
intestinal epithelium | 2.95e-14 | 4 |
colon | 5.90e-14 | 9 |
large intestine | 1.58e-11 | 11 |
trunk blood vessel | 1.99e-08 | 7 |
hepatic sinusoid | 5.74e-08 | 2 |
abdomen blood vessel | 5.74e-08 | 2 |
sinusoid | 5.74e-08 | 2 |
abdominal segment blood vessel | 5.74e-08 | 2 |
epithelium of mucosa | 1.40e-07 | 8 |
simple columnar epithelium | 7.87e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.