FFCP PHASE1:Hg19::chr12:91502347..91502368,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4060|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=6724|TSSclassifier=N|UniProt=P51884|association_with_transcript=387bp_to_AB590375,BT006707,CU675507,CU690252,DQ892554,DQ895765_5end|coexpression_cluster_id=C1371|description=CAGE_peak_5_at_LUM_5end|id=chr12:91502347..91502368,-|ontology_enrichment_celltype=CL:0000055!8.58e-09!180;CL:0000153!2.36e-08!9;CL:0000447!2.36e-08!9;CL:0002620!2.55e-08!23;CL:0000057!2.89e-08!75;CL:0000499!1.10e-07!27;CL:0002334!1.94e-07!12|ontology_enrichment_celltype_v019=CL:0000153;1.08e-15;9!CL:0000447;1.08e-15;9!CL:0000499;5.64e-15;28!CL:0000138;5.13e-10;6!CL:0000327;9.38e-09;15!CL:0000135;1.38e-08;3!CL:0000388;1.38e-08;3!CL:0002504;1.98e-07;3!CL:1000279;1.98e-07;3!CL:1000280;1.98e-07;3!CL:0000214;1.98e-07;3|ontology_enrichment_celltype_v019_2=CL:0000153,1.01e-15,9;CL:0000447,1.01e-15,9;CL:0000499,3.83e-15,28;CL:0000058,4.61e-10,6;CL:0000138,4.61e-10,6;CL:0000327,9.04e-09,15;CL:0000135,1.40e-08,3;CL:0000388,1.40e-08,3;CL:0002504,9.82e-08,3;CL:1000279,9.82e-08,3;CL:1000280,9.82e-08,3;CL:0000214,2.09e-07,3;CL:0002622,5.75e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:2394!6.90e-08!14|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004457!2.00e-07!12;UBERON:0000042!2.00e-07!12;UBERON:0004458!7.80e-07!49|ontology_enrichment_uberon_v019=UBERON:0004457;2.40e-11;9!UBERON:0000042;2.40e-11;9!UBERON:0007846;1.38e-08;3!UBERON:0000043;1.38e-08;3!UBERON:0007845;1.38e-08;3!UBERON:0006915;1.98e-07;3!UBERON:0007616;1.98e-07;3!UBERON:0002217;1.98e-07;3!UBERON:0002018;1.98e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.40e-08,3;UBERON:0000043,1.40e-08,3;UBERON:0007845,1.40e-08,3;UBERON:0004457,3.24e-08,12;UBERON:0000042,3.24e-08,12;UBERON:0006915,2.09e-07,3;UBERON:0007616,2.09e-07,3;UBERON:0002217,2.09e-07,3;UBERON:0002018,2.09e-07,3|phase1_expression=0.726713517082227,1.49870366723688,0.845726424575827,2.00146596706261,6.70441641640932,0.872338524100369,0,0,0,0,0,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,1.34140171940727,0,3.61439152384566,3.00802746381534,8.5459446186886,1.5905718941022,10.705967146658,0,0,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.95760732373446,0,0,0.286836620748814,0,1.12135520028461,0,0,0.311211035399766,0.404132016209064,0.163461903113459,0,0,0,0,0,0.747243402759005,0.23486899728753,0,0.140450806702248,0,0,0,0,1.23633464639278,0,0,0.336672227908132,0,0,0,0,0.150238058906597,0,1.4351170855109,2.13557388818567,0.847727604638247,0,1.13357782162283,2.57640540045629,1.67505170698431,0.337552664482532,0,1.51460264546469,1.01254888506529,0.161646056818812,2.4850671476163,1.10827308050404,0.508681776931463,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,0,2.3218396401599,0,0.591534000199219,0.842923450390509,0.482022059766964,1.43382164552112,1.08939722046203,0,1.75280700608214,0.392442930250692,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0.234817388471643,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387815147273333,0,0,0,1.04007436911366,0,0,0,0.857867961948885,2.17048642156577,0,0.325736184293735,0.710783897485092,0,0.301439377059586,0,0.199945982364114,0,0,0,0,1.14861935834114,1.42636905040718,0.289562613335158,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03985430765404,6.60187258549499,0.630809660135739,0.117141414992713,0,4.5481500811197,0,0,0,2.08520674723399,0,0,0,0,0,0,0,0.604780586659361,0.248107807818777,0.61384789315225,3.92924132206303,1.15325234330131,0.511707249066704,1.93024705372329,0,0.925258162815933,0.532685175939381,0.0821271560138091,1.03850885836724,0.348631135379878,0,0,0,1.7222167224691,1.27463817604702,1.96686622439136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.618246069886334,0.915694648183434,0.660075999364704,0,0,1.6068392984416,0,0,0.15350367472613,0.137836572484531,0.537101224341368,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,1.25924938732256,0,0,0,0,0,0,0,0.316379424718726,0.762520775695299,0,0,0,0,1.97859703341646,3.84351841630477,2.47406044925942,0,0,0,0,0,0,0.409499734223957,4.80778468642623,1.13008116620243,0,1.32687795048244,0,0,0.655894752046633,0,0,0,0.143411352204052,0.589494246078727,0,0.354761064070598,1.26664581178598,3.29294892959902,0,0,0,0,0,1.12972560932135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0.586032717087576,0,0,0,0.23874448473769,1.78178808499583,0.307160702099232,0,0,0,0,0,0.398495976502139,1.10513566212459,0,0,0.123084805461069,1.24415835064723,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0.347249989866585,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4060 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=6724 | |||
|TSSclassifier=N | |||
|UniProt=P51884 | |||
|association_with_transcript=387bp_to_AB590375,BT006707,CU675507,CU690252,DQ892554,DQ895765_5end | |||
|coexpression_cluster_id=C1371 | |||
|description=CAGE_peak_5_at_LUM_5end | |||
|id=chr12:91502347..91502368,- | |||
|ontology_enrichment_celltype=CL:0000055!8.58e-09!180;CL:0000153!2.36e-08!9;CL:0000447!2.36e-08!9;CL:0002620!2.55e-08!23;CL:0000057!2.89e-08!75;CL:0000499!1.10e-07!27;CL:0002334!1.94e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000153;1.08e-15;9!CL:0000447;1.08e-15;9!CL:0000499;5.64e-15;28!CL:0000138;5.13e-10;6!CL:0000327;9.38e-09;15!CL:0000135;1.38e-08;3!CL:0000388;1.38e-08;3!CL:0002504;1.98e-07;3!CL:1000279;1.98e-07;3!CL:1000280;1.98e-07;3!CL:0000214;1.98e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000153,1.01e-15,9;CL:0000447,1.01e-15,9;CL:0000499,3.83e-15,28;CL:0000058,4.61e-10,6;CL:0000138,4.61e-10,6;CL:0000327,9.04e-09,15;CL:0000135,1.40e-08,3;CL:0000388,1.40e-08,3;CL:0002504,9.82e-08,3;CL:1000279,9.82e-08,3;CL:1000280,9.82e-08,3;CL:0000214,2.09e-07,3;CL:0002622,5.75e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!6.90e-08!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004457!2.00e-07!12;UBERON:0000042!2.00e-07!12;UBERON:0004458!7.80e-07!49 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;2.40e-11;9!UBERON:0000042;2.40e-11;9!UBERON:0007846;1.38e-08;3!UBERON:0000043;1.38e-08;3!UBERON:0007845;1.38e-08;3!UBERON:0006915;1.98e-07;3!UBERON:0007616;1.98e-07;3!UBERON:0002217;1.98e-07;3!UBERON:0002018;1.98e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,1.40e-08,3;UBERON:0000043,1.40e-08,3;UBERON:0007845,1.40e-08,3;UBERON:0004457,3.24e-08,12;UBERON:0000042,3.24e-08,12;UBERON:0006915,2.09e-07,3;UBERON:0007616,2.09e-07,3;UBERON:0002217,2.09e-07,3;UBERON:0002018,2.09e-07,3 | |||
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| |||
|short_description=p5@LUM | |||
}} |
Revision as of 00:55, 11 September 2013
Short description: | p5@LUM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_LUM_5end |
Coexpression cluster: | C1371_tenocyte_Chondrocyte_placenta_Fibroblast_skin_mesenchymal_chorionic |
Association with transcript: | 387bp_to_AB590375, BT006707, CU675507, CU690252, DQ892554, DQ895765_5end |
EntrezGene: | LUM |
HGNC: | 6724 |
UniProt: | P51884 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
GAG secreting cell | 1.01e-15 | 9 |
carbohydrate secreting cell | 1.01e-15 | 9 |
stromal cell | 3.83e-15 | 28 |
chondroblast | 4.61e-10 | 6 |
chondrocyte | 4.61e-10 | 6 |
extracellular matrix secreting cell | 9.04e-09 | 15 |
fibrocyte | 1.40e-08 | 3 |
tendon cell | 1.40e-08 | 3 |
enteric smooth muscle cell | 9.82e-08 | 3 |
smooth muscle cell of large intestine | 9.82e-08 | 3 |
smooth muscle cell of colon | 9.82e-08 | 3 |
synovial cell | 2.09e-07 | 3 |
prostate stromal cell | 5.75e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 1.40e-08 | 3 |
tendon | 1.40e-08 | 3 |
regular connective tissue | 1.40e-08 | 3 |
cavity lining | 3.24e-08 | 12 |
serous membrane | 3.24e-08 | 12 |
stratified squamous epithelium | 2.09e-07 | 3 |
layer of synovial tissue | 2.09e-07 | 3 |
synovial joint | 2.09e-07 | 3 |
synovial membrane of synovial joint | 2.09e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.