FFCP PHASE1:Hg19::chr13:93957776..93957797,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C89|description=CAGE_peak_at_chr13:93957776..93957797,+|id=chr13:93957776..93957797,+|ontology_enrichment_celltype=CL:0000064!2.67e-12!3;CL:0005012!2.67e-12!3;CL:0000067!2.67e-12!3;CL:0002304!2.67e-12!3|ontology_enrichment_celltype_v019=CL:0000243;2.35e-10;15!CL:0000125;2.35e-10;15!CL:0000095;2.26e-09;17!CL:0002319;7.03e-07;25|ontology_enrichment_celltype_v019_2=CL:0000243,2.35e-10,15;CL:0000125,2.35e-10,15;CL:0000030,2.35e-10,15;CL:0000339,2.35e-10,15;CL:0000095,2.26e-09,17;CL:0000123,2.26e-09,17;CL:0002319,7.03e-07,25|ontology_enrichment_development_v019=UBERON:0006238;2.02e-15;10!UBERON:0003056;1.83e-14;3!CL:0000339;2.35e-10;15|ontology_enrichment_disease=DOID:3371!1.07e-09!1;DOID:4549!1.07e-09!1;DOID:5861!1.07e-09!1;DOID:6496!1.07e-09!1;DOID:169!8.89e-07!6|ontology_enrichment_disease_v019=DOID:3093;3.14e-14;11!DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7|ontology_enrichment_disease_v019_2=DOID:3093,3.14e-14,11;DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7|ontology_enrichment_uberon=UBERON:0000970!3.16e-15!20;UBERON:0002104!1.76e-14!21;UBERON:0000020!3.47e-13!23;UBERON:0001032!1.28e-12!24;UBERON:0004456!1.28e-12!24;UBERON:0001778!2.67e-12!3;UBERON:0001775!2.67e-12!3;UBERON:0000019!3.00e-11!19;UBERON:0000047!3.00e-11!19;UBERON:0004088!3.00e-11!19;UBERON:0003072!3.00e-11!19;UBERON:0003071!3.00e-11!19;UBERON:0004128!3.00e-11!19;UBERON:0001456!3.65e-10!21;UBERON:0001282!8.99e-10!1;UBERON:0009842!8.99e-10!1;UBERON:0003704!8.99e-10!1;UBERON:0001171!8.99e-10!1;UBERON:0001172!8.99e-10!1;UBERON:0000488!1.89e-09!4;UBERON:0001444!4.75e-08!48;UBERON:0000966!4.95e-08!5;UBERON:0005388!4.95e-08!5;UBERON:0001802!4.95e-08!5;UBERON:0000013!5.69e-08!5;UBERON:0002410!5.69e-08!5;UBERON:0007625!1.68e-07!11;UBERON:0005085!2.58e-07!29|ontology_enrichment_uberon_v019=UBERON:0001905;6.96e-21;2!UBERON:0002757;6.96e-21;2!UBERON:0010134;6.96e-21;2!UBERON:0005408;6.96e-21;2!UBERON:0001899;6.96e-21;2!UBERON:0003296;3.79e-11;4!UBERON:0010133;3.79e-11;4!UBERON:0002784;3.79e-11;4!UBERON:0000966;3.22e-09;5!UBERON:0005388;3.22e-09;5!UBERON:0001802;3.22e-09;5!UBERON:0000970;6.17e-09;20!UBERON:0002104;1.48e-08;21!UBERON:0000020;6.75e-08;23!UBERON:0001032;1.31e-07;24!UBERON:0004456;1.31e-07;24!UBERON:0001894;6.39e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0000970,1.48e-08,21;UBERON:0002104,1.48e-08,21;UBERON:0000966,6.78e-08,6;UBERON:0005388,6.78e-08,6;UBERON:0001802,6.78e-08,6;UBERON:0000020,1.31e-07,24;UBERON:0001032,1.31e-07,24;UBERON:0004456,1.31e-07,24;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,3.61569185248852,0.137041924646751,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.33247765162023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07140367175657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,2.21219056425817,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.39625936819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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C89 | |||
|description=CAGE_peak_at_chr13:93957776..93957797,+ | |||
|id=chr13:93957776..93957797,+ | |||
|ontology_enrichment_celltype=CL:0000064!2.67e-12!3;CL:0005012!2.67e-12!3;CL:0000067!2.67e-12!3;CL:0002304!2.67e-12!3 | |||
|ontology_enrichment_celltype_v019=CL:0000243;2.35e-10;15!CL:0000125;2.35e-10;15!CL:0000095;2.26e-09;17!CL:0002319;7.03e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000243,2.35e-10,15;CL:0000125,2.35e-10,15;CL:0000030,2.35e-10,15;CL:0000339,2.35e-10,15;CL:0000095,2.26e-09,17;CL:0000123,2.26e-09,17;CL:0002319,7.03e-07,25 | |||
|ontology_enrichment_development_v019=UBERON:0006238;2.02e-15;10!UBERON:0003056;1.83e-14;3!CL:0000339;2.35e-10;15 | |||
|ontology_enrichment_disease=DOID:3371!1.07e-09!1;DOID:4549!1.07e-09!1;DOID:5861!1.07e-09!1;DOID:6496!1.07e-09!1;DOID:169!8.89e-07!6 | |||
|ontology_enrichment_disease_v019=DOID:3093;3.14e-14;11!DOID:5409;2.53e-11;4!DOID:1325;5.08e-07;7!DOID:3904;5.08e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,3.14e-14,11;DOID:5409,2.53e-11,4;DOID:1325,5.08e-07,7;DOID:3904,5.08e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0000970!3.16e-15!20;UBERON:0002104!1.76e-14!21;UBERON:0000020!3.47e-13!23;UBERON:0001032!1.28e-12!24;UBERON:0004456!1.28e-12!24;UBERON:0001778!2.67e-12!3;UBERON:0001775!2.67e-12!3;UBERON:0000019!3.00e-11!19;UBERON:0000047!3.00e-11!19;UBERON:0004088!3.00e-11!19;UBERON:0003072!3.00e-11!19;UBERON:0003071!3.00e-11!19;UBERON:0004128!3.00e-11!19;UBERON:0001456!3.65e-10!21;UBERON:0001282!8.99e-10!1;UBERON:0009842!8.99e-10!1;UBERON:0003704!8.99e-10!1;UBERON:0001171!8.99e-10!1;UBERON:0001172!8.99e-10!1;UBERON:0000488!1.89e-09!4;UBERON:0001444!4.75e-08!48;UBERON:0000966!4.95e-08!5;UBERON:0005388!4.95e-08!5;UBERON:0001802!4.95e-08!5;UBERON:0000013!5.69e-08!5;UBERON:0002410!5.69e-08!5;UBERON:0007625!1.68e-07!11;UBERON:0005085!2.58e-07!29 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;6.96e-21;2!UBERON:0002757;6.96e-21;2!UBERON:0010134;6.96e-21;2!UBERON:0005408;6.96e-21;2!UBERON:0001899;6.96e-21;2!UBERON:0003296;3.79e-11;4!UBERON:0010133;3.79e-11;4!UBERON:0002784;3.79e-11;4!UBERON:0000966;3.22e-09;5!UBERON:0005388;3.22e-09;5!UBERON:0001802;3.22e-09;5!UBERON:0000970;6.17e-09;20!UBERON:0002104;1.48e-08;21!UBERON:0000020;6.75e-08;23!UBERON:0001032;1.31e-07;24!UBERON:0004456;1.31e-07;24!UBERON:0001894;6.39e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,6.96e-21,2;UBERON:0002757,6.96e-21,2;UBERON:0010134,6.96e-21,2;UBERON:0005408,6.96e-21,2;UBERON:0001899,6.96e-21,2;UBERON:0003296,3.79e-11,4;UBERON:0010133,3.79e-11,4;UBERON:0002784,3.79e-11,4;UBERON:0000970,1.48e-08,21;UBERON:0002104,1.48e-08,21;UBERON:0000966,6.78e-08,6;UBERON:0005388,6.78e-08,6;UBERON:0001802,6.78e-08,6;UBERON:0000020,1.31e-07,24;UBERON:0001032,1.31e-07,24;UBERON:0004456,1.31e-07,24;UBERON:0001894,6.39e-07,7;UBERON:0006222,6.39e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0.611030144933625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0882561266915003,3.61569185248852,0.137041924646751,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.33247765162023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383683113910955,0,0,0.218419276384028,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07140367175657,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,2.21219056425817,0,0,0,0,0.17071847709395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,25.3962593681941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr13:93957776..93957797,+ | |||
}} |
Revision as of 02:58, 11 September 2013
Short description: | p@chr13:93957776..93957797, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr13:93957776..93957797, + |
Coexpression cluster: | C89_small_retinoblastoma_medulloblastoma_iPS_acantholytic_eye_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glial cell (sensu Vertebrata) | 2.35e-10 | 15 |
glial cell | 2.35e-10 | 15 |
glioblast | 2.35e-10 | 15 |
glioblast (sensu Vertebrata) | 2.35e-10 | 15 |
neuron associated cell | 2.26e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 2.26e-09 | 17 |
neural cell | 7.03e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
pineal body | 6.96e-21 | 2 |
regional part of epithalamus | 6.96e-21 | 2 |
secretory circumventricular organ | 6.96e-21 | 2 |
circumventricular organ | 6.96e-21 | 2 |
epithalamus | 6.96e-21 | 2 |
gland of diencephalon | 3.79e-11 | 4 |
neuroendocrine gland | 3.79e-11 | 4 |
regional part of diencephalon | 3.79e-11 | 4 |
eye | 1.48e-08 | 21 |
visual system | 1.48e-08 | 21 |
retina | 6.78e-08 | 6 |
photoreceptor array | 6.78e-08 | 6 |
posterior segment of eyeball | 6.78e-08 | 6 |
sense organ | 1.31e-07 | 24 |
sensory system | 1.31e-07 | 24 |
entire sense organ system | 1.31e-07 | 24 |
diencephalon | 6.39e-07 | 7 |
future diencephalon | 6.39e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 3.14e-14 | 11 |
lung small cell carcinoma | 2.53e-11 | 4 |
bronchus cancer | 5.08e-07 | 7 |
bronchogenic carcinoma | 5.08e-07 | 7 |
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