FFCP PHASE1:Hg19::chr15:74495513..74495544,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=64220|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30650|TSSclassifier=S|UniProt=B3KPB8,Q9BX79|association_with_transcript=11bp_to_NM_001142618,uc002axl.2,uc010bji.2,uc010bjj.1_5end|coexpression_cluster_id=C102|description=CAGE_peak_8_at_STRA6_5end|id=chr15:74495513..74495544,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:0000708;5.43e-15;3!CL:0002622;7.94e-15;3!CL:0000349;3.68e-11;19!CL:0002549;4.40e-11;2!CL:0000333;2.02e-09;5!CL:0002569;1.08e-07;6!CL:0000499;2.24e-07;28!CL:0000346;4.46e-07;3!CL:1000428;4.46e-07;3|ontology_enrichment_celltype_v019_2=CL:0002622,1.17e-14,3;CL:0000708,1.34e-14,3;CL:0000349,3.00e-11,19;CL:0002549,4.22e-11,2;CL:0002569,1.19e-07,6;CL:0000499,3.40e-07,28;CL:0000346,4.62e-07,3;CL:1000428,4.62e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:169;6.42e-08;6!DOID:171;6.71e-08;10|ontology_enrichment_disease_v019_2=DOID:171,4.94e-08,10;DOID:169,5.16e-08,6|ontology_enrichment_uberon=UBERON:0002200!4.15e-09!11;UBERON:0006876!4.15e-09!11;UBERON:0002203!8.65e-08!6;UBERON:0001768!8.65e-08!6;UBERON:0005631!2.47e-07!14;UBERON:0000158!2.47e-07!14|ontology_enrichment_uberon_v019=UBERON:0003210;5.43e-15;3!UBERON:0006876;3.56e-11;11!UBERON:0005629;4.40e-11;2!UBERON:0005358;4.40e-11;2!UBERON:0001886;4.40e-11;2!UBERON:0004086;4.40e-11;2!UBERON:0005282;4.40e-11;2!UBERON:0005281;4.40e-11;2!UBERON:0005284;1.33e-09;5!UBERON:0000013;2.02e-09;5!UBERON:0002410;2.02e-09;5!UBERON:0000478;1.21e-08;24!UBERON:0003422;1.08e-07;6!UBERON:0000412;4.46e-07;3!UBERON:0001992;4.46e-07;3!UBERON:0002367;5.45e-07;11!UBERON:0010147;5.45e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0003210,1.34e-14,3;UBERON:0006876,3.58e-11,11;UBERON:0005629,4.22e-11,2;UBERON:0005358,4.22e-11,2;UBERON:0001886,4.22e-11,2;UBERON:0004086,4.22e-11,2;UBERON:0005282,4.22e-11,2;UBERON:0005281,4.22e-11,2;UBERON:0005284,1.19e-09,5;UBERON:0000013,1.55e-09,5;UBERON:0002410,1.55e-09,5;UBERON:0000478,1.04e-08,24;UBERON:0003422,1.19e-07,6;UBERON:0000412,4.62e-07,3;UBERON:0001992,4.62e-07,3;UBERON:0002367,5.01e-07,11;UBERON:0010147,5.01e-07,11;UBERON:0009846,5.01e-07,11;UBERON:0003353,5.01e-07,11;UBERON:0004902,5.01e-07,11;UBERON:0003820,5.01e-07,11;UBERON:0009847,5.01e-07,11|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0.218441372130172,0.263766978228454,0,0,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.472674085820339,0.886917589850256,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286836620748814,0,0,0,0.24666754841716,0,0,0,2.72443369760877,3.45705554687999,0.70296429550139,0,0,0,0,0,0,0.204154171254893,0.245668634623536,0,0,0,0,0.718618141816238,0,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0.484938170456436,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,1.28648187638577,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.23038153388083,0,0,0,0,0,0,1.44331342025273,0.579652024875384,0.587043471179108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00917975910825,6.10344096366592,1.24675085895615,3.49033632546,0,0.845302752556,1.86156681609409,1.04007436911366,0,0,0,0.142977993658148,1.08524321078289,0,0.325736184293735,0.355391948742546,1.58390374586686,0.602878754119172,0.871533458600294,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0,0.207970861530807,0.178428988797162,0.157702415033935,1.17141414992713,0,0,0,0,0.184369168541703,1.04260337361699,1.37060810223918,0.686286847621712,0,0,0,1.81876542867756,0,0.30239029332968,0,0,0,0,0,0,0,0,1.06537035187876,0.0821271560138091,1.55776328755086,0,0,0,0,1.26295892981067,2.54927635209404,1.18011973463482,0,0.15403067420883,0,0,0,0,0,0,0,0.541892875087706,0.501689773854853,0,0,0.223874754722178,0,0,0,1.31205858279882,0,0,0,0,0,0,0,0.290012154876366,0,0.307007349452259,0.137836572484531,0.214840489736547,0.290033387828457,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0.143124886741991,2.97726695487734,0,0,0,0,0.95460974377781,0,0.179872457583315,0.274537029736055,0.235624804691373,0,0,0,0,0,0,1.9109987597118,0,1.13008116620243,0,0,0,0,0,0.202910376962704,0.30982349809975,0,0,0.196498082026242,0.35667105148125,1.06428319221179,0,0,0.75894634753143,2.44954304171488,0,0.670302275535787,1.08890984861323,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0.0711418433484141,0.478278818186467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.334330152832435,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0.629078458031288,1.61119057208048,0,0.197286811273867,0,0,0,0,0,0,0,0,0.455173793141999,0.5085073005855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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=64220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30650 | |||
|TSSclassifier=S | |||
|UniProt=B3KPB8,Q9BX79 | |||
|association_with_transcript=11bp_to_NM_001142618,uc002axl.2,uc010bji.2,uc010bjj.1_5end | |||
|coexpression_cluster_id=C102 | |||
|description=CAGE_peak_8_at_STRA6_5end | |||
|id=chr15:74495513..74495544,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000708;5.43e-15;3!CL:0002622;7.94e-15;3!CL:0000349;3.68e-11;19!CL:0002549;4.40e-11;2!CL:0000333;2.02e-09;5!CL:0002569;1.08e-07;6!CL:0000499;2.24e-07;28!CL:0000346;4.46e-07;3!CL:1000428;4.46e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,1.17e-14,3;CL:0000708,1.34e-14,3;CL:0000349,3.00e-11,19;CL:0002549,4.22e-11,2;CL:0002569,1.19e-07,6;CL:0000499,3.40e-07,28;CL:0000346,4.62e-07,3;CL:1000428,4.62e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:169;6.42e-08;6!DOID:171;6.71e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,4.94e-08,10;DOID:169,5.16e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0002200!4.15e-09!11;UBERON:0006876!4.15e-09!11;UBERON:0002203!8.65e-08!6;UBERON:0001768!8.65e-08!6;UBERON:0005631!2.47e-07!14;UBERON:0000158!2.47e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0003210;5.43e-15;3!UBERON:0006876;3.56e-11;11!UBERON:0005629;4.40e-11;2!UBERON:0005358;4.40e-11;2!UBERON:0001886;4.40e-11;2!UBERON:0004086;4.40e-11;2!UBERON:0005282;4.40e-11;2!UBERON:0005281;4.40e-11;2!UBERON:0005284;1.33e-09;5!UBERON:0000013;2.02e-09;5!UBERON:0002410;2.02e-09;5!UBERON:0000478;1.21e-08;24!UBERON:0003422;1.08e-07;6!UBERON:0000412;4.46e-07;3!UBERON:0001992;4.46e-07;3!UBERON:0002367;5.45e-07;11!UBERON:0010147;5.45e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,1.34e-14,3;UBERON:0006876,3.58e-11,11;UBERON:0005629,4.22e-11,2;UBERON:0005358,4.22e-11,2;UBERON:0001886,4.22e-11,2;UBERON:0004086,4.22e-11,2;UBERON:0005282,4.22e-11,2;UBERON:0005281,4.22e-11,2;UBERON:0005284,1.19e-09,5;UBERON:0000013,1.55e-09,5;UBERON:0002410,1.55e-09,5;UBERON:0000478,1.04e-08,24;UBERON:0003422,1.19e-07,6;UBERON:0000412,4.62e-07,3;UBERON:0001992,4.62e-07,3;UBERON:0002367,5.01e-07,11;UBERON:0010147,5.01e-07,11;UBERON:0009846,5.01e-07,11;UBERON:0003353,5.01e-07,11;UBERON:0004902,5.01e-07,11;UBERON:0003820,5.01e-07,11;UBERON:0009847,5.01e-07,11 | |||
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|short_description=p8@STRA6 | |||
}} |
Revision as of 08:13, 11 September 2013
Short description: | p8@STRA6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_STRA6_5end |
Coexpression cluster: | C102_neuroblastoma_testicular_pituitary_carcinosarcoma_rectum_acantholytic_iPS |
Association with transcript: | 11bp_to_NM_001142618, uc002axl.2, uc010bji.2, uc010bjj.1_5end |
EntrezGene: | STRA6 |
HGNC: | 30650 |
UniProt: | B3KPB8Q9BX79 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 1.17e-14 | 3 |
leptomeningeal cell | 1.34e-14 | 3 |
extraembryonic cell | 3.00e-11 | 19 |
fibroblast of choroid plexus | 4.22e-11 | 2 |
mesenchymal stem cell of umbilical cord | 1.19e-07 | 6 |
stromal cell | 3.40e-07 | 28 |
hair follicle dermal papilla cell | 4.62e-07 | 3 |
stem cell of epidermis | 4.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 1.34e-14 | 3 |
vasculature of organ | 3.58e-11 | 11 |
vascular plexus | 4.22e-11 | 2 |
ventricle of nervous system | 4.22e-11 | 2 |
choroid plexus | 4.22e-11 | 2 |
brain ventricle | 4.22e-11 | 2 |
ventricular system of brain | 4.22e-11 | 2 |
ventricular system of central nervous system | 4.22e-11 | 2 |
brain vasculature | 1.19e-09 | 5 |
sympathetic nervous system | 1.55e-09 | 5 |
autonomic nervous system | 1.55e-09 | 5 |
extraembryonic structure | 1.04e-08 | 24 |
mesenchyme of umbilical cord | 1.19e-07 | 6 |
dermal papilla | 4.62e-07 | 3 |
papillary layer of dermis | 4.62e-07 | 3 |
prostate gland | 5.01e-07 | 11 |
male accessory sex gland | 5.01e-07 | 11 |
embryonic cloacal epithelium | 5.01e-07 | 11 |
epithelium of hindgut | 5.01e-07 | 11 |
urogenital sinus epithelium | 5.01e-07 | 11 |
prostate bud | 5.01e-07 | 11 |
prostate field | 5.01e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 4.94e-08 | 10 |
neuroendocrine tumor | 5.16e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.