FFCP PHASE1:Hg19::chr17:48141446..48141483,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C3652|description=CAGE_peak_at_chr17:48141446..48141483,+|id=chr17:48141446..48141483,+|ontology_enrichment_celltype=CL:0000066!5.13e-27!254;CL:0000220!1.35e-23!246;CL:0002321!6.55e-23!248;CL:0002076!3.12e-14!43;CL:0000548!2.02e-10!679;CL:0000004!2.02e-10!679;CL:0000255!2.02e-10!679;CL:0000223!3.47e-10!59;CL:0000012!6.41e-10!682;CL:0002077!1.41e-09!33;CL:1000449!9.72e-09!16;CL:0002368!1.58e-08!13;CL:0000076!2.96e-08!62;CL:1000507!3.50e-08!12;CL:1000494!3.50e-08!12;CL:1000497!3.81e-08!18;CL:0002518!3.81e-08!18;CL:0000221!5.62e-08!71;CL:0000055!1.83e-07!180;CL:0002681!6.41e-07!13;CL:0002584!6.41e-07!13|ontology_enrichment_celltype_v019=CL:1000449;1.10e-13;15!CL:1000507;2.74e-12;10!CL:1000494;2.74e-12;10!CL:0002368;3.13e-12;13!CL:1000497;1.06e-11;17!CL:0002518;1.06e-11;17!CL:0002077;6.74e-11;34!CL:0002076;4.85e-10;42!CL:0002681;9.72e-10;12!CL:0002584;9.72e-10;12!CL:0002202;2.73e-09;9!CL:0002632;2.73e-09;9!CL:0002159;4.79e-08;14!CL:0000244;1.38e-07;4!CL:0000731;1.38e-07;4!CL:0000075;4.90e-07;27|ontology_enrichment_celltype_v019_2=CL:0000066,9.00e-23,253;CL:0002321,3.29e-18,250;CL:0002076,1.28e-14,42;CL:1000449,9.73e-14,15;CL:1000507,2.20e-12,10;CL:1000494,2.20e-12,10;CL:0002077,2.72e-12,34;CL:0002368,2.96e-12,13;CL:1000497,9.56e-12,17;CL:0002518,9.56e-12,17;CL:0000223,6.40e-11,58;CL:0002681,7.61e-10,12;CL:0002584,7.61e-10,12;CL:0002202,2.72e-09,9;CL:0002632,2.72e-09,9;CL:0002159,3.45e-08,14;CL:0000244,1.14e-07,4;CL:0000731,1.14e-07,4;CL:0000221,1.87e-07,72;CL:0000075,4.44e-07,27|ontology_enrichment_development_v019=CL:0000223;8.26e-07;58|ontology_enrichment_disease=DOID:120!3.77e-08!27;DOID:193!4.39e-08!29|ontology_enrichment_disease_v019=DOID:193;1.10e-09;29!DOID:120;4.09e-09;27!DOID:2394;3.83e-08;14|ontology_enrichment_disease_v019_2=DOID:193,1.05e-09,29;DOID:120,3.89e-09,27;DOID:2394,3.39e-08,14|ontology_enrichment_uberon=UBERON:0003104!2.86e-09!238;UBERON:0009142!2.86e-09!238;UBERON:0000481!4.27e-09!347;UBERON:0004211!9.72e-09!16;UBERON:0001285!9.72e-09!16;UBERON:0007684!9.72e-09!16;UBERON:0003220!9.72e-09!16;UBERON:0004208!9.72e-09!16;UBERON:0005256!3.06e-08!143;UBERON:0009773!3.50e-08!12;UBERON:0001231!3.50e-08!12;UBERON:0004810!3.50e-08!12;UBERON:0000080!6.64e-08!18;UBERON:0002120!6.64e-08!18;UBERON:0004875!6.64e-08!18;UBERON:0005721!6.64e-08!18;UBERON:0005754!6.64e-08!18;UBERON:0007297!6.64e-08!18;UBERON:0002100!7.23e-08!216;UBERON:0006555!8.37e-08!17;UBERON:0005103!8.37e-08!17;UBERON:0000083!8.37e-08!17;UBERON:0009201!8.37e-08!17;UBERON:0004819!8.37e-08!17;UBERON:0006553!8.37e-08!17;UBERON:0003074!8.37e-08!17;UBERON:0003060!8.37e-08!17;UBERON:0000119!1.14e-07!312;UBERON:0004876!1.67e-07!20;UBERON:0000483!1.83e-07!309;UBERON:0000353!2.96e-07!17;UBERON:0000058!3.14e-07!26;UBERON:0001225!6.41e-07!13;UBERON:0008987!6.41e-07!13;UBERON:0000475!7.03e-07!365|ontology_enrichment_uberon_v019=UBERON:0006555;1.10e-13;15!UBERON:0004819;1.10e-13;15!UBERON:0001285;1.10e-13;15!UBERON:0007684;1.10e-13;15!UBERON:0004211;2.74e-12;10!UBERON:0009773;2.74e-12;10!UBERON:0001231;2.74e-12;10!UBERON:0004810;2.74e-12;10!UBERON:0000353;2.86e-11;15!UBERON:0006554;1.53e-10;30!UBERON:0001008;1.53e-10;30!UBERON:0001225;9.72e-10;12!UBERON:0008987;9.72e-10;12!UBERON:0002113;2.07e-07;24!UBERON:0011143;2.07e-07;24!UBERON:0001851;2.14e-07;15!UBERON:0005910;4.21e-07;6|ontology_enrichment_uberon_v019_2=UBERON:0004211,9.73e-14,15;UBERON:0009773,9.73e-14,15;UBERON:0001231,9.73e-14,15;UBERON:0001285,9.73e-14,15;UBERON:0007684,9.73e-14,15;UBERON:0004208,9.73e-14,15;UBERON:0006555,1.12e-12,16;UBERON:0004819,1.12e-12,16;UBERON:0004810,2.20e-12,10;UBERON:0000353,2.27e-11,15;UBERON:0001225,7.61e-10,12;UBERON:0008987,7.61e-10,12;UBERON:0001851,1.77e-07,15;UBERON:0006554,3.16e-07,47;UBERON:0005910,3.99e-07,6;UBERON:0001008,5.55e-07,48|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,4.88460817580699,0,0.527533956456907,0.247532705920093,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0.61560529038394,2.04000691244253,0.626909442956176,0.572471974262113,2.18999080116615,1.38096903554283,0.0764134057479513,0,0,0,0,0,2.75826367343678,5.12050061923025,16.2691764473387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384273959177026,0,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0.289693037921647,0,0.486634870302636,0.378139268656271,1.55210578223795,1.22968699970376,0.261958150995425,2.18577172975525,2.59549109949101,0,0,0.398873881556595,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0.550236083880135,0.208994966536811,0.258416759169329,0,0,0,1.52054421143703,0.488124115096339,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0.1832017439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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C3652 | |||
|description=CAGE_peak_at_chr17:48141446..48141483,+ | |||
|id=chr17:48141446..48141483,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.13e-27!254;CL:0000220!1.35e-23!246;CL:0002321!6.55e-23!248;CL:0002076!3.12e-14!43;CL:0000548!2.02e-10!679;CL:0000004!2.02e-10!679;CL:0000255!2.02e-10!679;CL:0000223!3.47e-10!59;CL:0000012!6.41e-10!682;CL:0002077!1.41e-09!33;CL:1000449!9.72e-09!16;CL:0002368!1.58e-08!13;CL:0000076!2.96e-08!62;CL:1000507!3.50e-08!12;CL:1000494!3.50e-08!12;CL:1000497!3.81e-08!18;CL:0002518!3.81e-08!18;CL:0000221!5.62e-08!71;CL:0000055!1.83e-07!180;CL:0002681!6.41e-07!13;CL:0002584!6.41e-07!13 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.10e-13;15!CL:1000507;2.74e-12;10!CL:1000494;2.74e-12;10!CL:0002368;3.13e-12;13!CL:1000497;1.06e-11;17!CL:0002518;1.06e-11;17!CL:0002077;6.74e-11;34!CL:0002076;4.85e-10;42!CL:0002681;9.72e-10;12!CL:0002584;9.72e-10;12!CL:0002202;2.73e-09;9!CL:0002632;2.73e-09;9!CL:0002159;4.79e-08;14!CL:0000244;1.38e-07;4!CL:0000731;1.38e-07;4!CL:0000075;4.90e-07;27 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.00e-23,253;CL:0002321,3.29e-18,250;CL:0002076,1.28e-14,42;CL:1000449,9.73e-14,15;CL:1000507,2.20e-12,10;CL:1000494,2.20e-12,10;CL:0002077,2.72e-12,34;CL:0002368,2.96e-12,13;CL:1000497,9.56e-12,17;CL:0002518,9.56e-12,17;CL:0000223,6.40e-11,58;CL:0002681,7.61e-10,12;CL:0002584,7.61e-10,12;CL:0002202,2.72e-09,9;CL:0002632,2.72e-09,9;CL:0002159,3.45e-08,14;CL:0000244,1.14e-07,4;CL:0000731,1.14e-07,4;CL:0000221,1.87e-07,72;CL:0000075,4.44e-07,27 | |||
|ontology_enrichment_development_v019=CL:0000223;8.26e-07;58 | |||
|ontology_enrichment_disease=DOID:120!3.77e-08!27;DOID:193!4.39e-08!29 | |||
|ontology_enrichment_disease_v019=DOID:193;1.10e-09;29!DOID:120;4.09e-09;27!DOID:2394;3.83e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:193,1.05e-09,29;DOID:120,3.89e-09,27;DOID:2394,3.39e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0003104!2.86e-09!238;UBERON:0009142!2.86e-09!238;UBERON:0000481!4.27e-09!347;UBERON:0004211!9.72e-09!16;UBERON:0001285!9.72e-09!16;UBERON:0007684!9.72e-09!16;UBERON:0003220!9.72e-09!16;UBERON:0004208!9.72e-09!16;UBERON:0005256!3.06e-08!143;UBERON:0009773!3.50e-08!12;UBERON:0001231!3.50e-08!12;UBERON:0004810!3.50e-08!12;UBERON:0000080!6.64e-08!18;UBERON:0002120!6.64e-08!18;UBERON:0004875!6.64e-08!18;UBERON:0005721!6.64e-08!18;UBERON:0005754!6.64e-08!18;UBERON:0007297!6.64e-08!18;UBERON:0002100!7.23e-08!216;UBERON:0006555!8.37e-08!17;UBERON:0005103!8.37e-08!17;UBERON:0000083!8.37e-08!17;UBERON:0009201!8.37e-08!17;UBERON:0004819!8.37e-08!17;UBERON:0006553!8.37e-08!17;UBERON:0003074!8.37e-08!17;UBERON:0003060!8.37e-08!17;UBERON:0000119!1.14e-07!312;UBERON:0004876!1.67e-07!20;UBERON:0000483!1.83e-07!309;UBERON:0000353!2.96e-07!17;UBERON:0000058!3.14e-07!26;UBERON:0001225!6.41e-07!13;UBERON:0008987!6.41e-07!13;UBERON:0000475!7.03e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.10e-13;15!UBERON:0004819;1.10e-13;15!UBERON:0001285;1.10e-13;15!UBERON:0007684;1.10e-13;15!UBERON:0004211;2.74e-12;10!UBERON:0009773;2.74e-12;10!UBERON:0001231;2.74e-12;10!UBERON:0004810;2.74e-12;10!UBERON:0000353;2.86e-11;15!UBERON:0006554;1.53e-10;30!UBERON:0001008;1.53e-10;30!UBERON:0001225;9.72e-10;12!UBERON:0008987;9.72e-10;12!UBERON:0002113;2.07e-07;24!UBERON:0011143;2.07e-07;24!UBERON:0001851;2.14e-07;15!UBERON:0005910;4.21e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,9.73e-14,15;UBERON:0009773,9.73e-14,15;UBERON:0001231,9.73e-14,15;UBERON:0001285,9.73e-14,15;UBERON:0007684,9.73e-14,15;UBERON:0004208,9.73e-14,15;UBERON:0006555,1.12e-12,16;UBERON:0004819,1.12e-12,16;UBERON:0004810,2.20e-12,10;UBERON:0000353,2.27e-11,15;UBERON:0001225,7.61e-10,12;UBERON:0008987,7.61e-10,12;UBERON:0001851,1.77e-07,15;UBERON:0006554,3.16e-07,47;UBERON:0005910,3.99e-07,6;UBERON:0001008,5.55e-07,48 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,4.88460817580699,0,0.527533956456907,0.247532705920093,0.662794751455832,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0.61560529038394,2.04000691244253,0.626909442956176,0.572471974262113,2.18999080116615,1.38096903554283,0.0764134057479513,0,0,0,0,0,2.75826367343678,5.12050061923025,16.2691764473387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384273959177026,0,0,0,0,0,0,0,0.113309342697566,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,0.289693037921647,0,0.486634870302636,0.378139268656271,1.55210578223795,1.22968699970376,0.261958150995425,2.18577172975525,2.59549109949101,0,0,0.398873881556595,0,0,0,0.198762407366705,0,0,0.56530794192401,0,0.550236083880135,0.208994966536811,0.258416759169329,0,0,0,1.52054421143703,0.488124115096339,0,0.81014194788176,0.17859945656816,0,0.112611480483322,0,0,0.183201743930407,0,0,1.74437620857014,0.993943903390637,0.886413581652058,0.132409180813219,0.286836620748814,0.709336764396714,1.68203280042692,0,0.98667019366864,0,1.34710672069688,0.653847612453835,0.151357427644931,0.576175924479999,0,0.624320153660641,0,0.597794722207204,0.117434498643765,0.323745888736263,0.280901613404497,0,0.982674538494144,0.206651562351531,0,0.741800787835671,0.910161361938026,2.15585442544872,0,0.500474079487857,0.277064115484183,0,0.612975591598039,0.150238058906597,1.13432183160021,0.89694817844431,0,0.211931901159562,0.300091096084402,0.206105058476878,0.257640540045629,0.744467425326359,0.337552664482532,0.292311015483596,0,0.0920498986422993,0,1.06502877754984,0.302256294682921,0.169560592310488,0.966304265816484,0.818238361772504,0.573609190778008,0,0,0,0.10366105501537,0.252320850875628,0,1.56449532329816,0.643240938192885,2.76269842704961,0.928735856063958,1.44375896333917,0.709840800239063,0.337169380156203,0.241011029883482,0.772057809126758,0.435758888184812,0,0.269662616320329,0.588664395376038,0.769494313892781,0,5.60967095213783,0,1.47008711385542,0,0,0,0,0.245976877086227,1.02940686179115,2.96325770603289,5.62008766288098,2.31216636546751,0.462942225792648,0.325808305310325,1.03993478527958,0,0.231860809950154,0,0.288732895522148,0,0.380508304469197,0,0.858486162094873,0,0,0.148631162288728,0,1.84780341018745,0.567100388969546,1.61205340865127,2.90633938513962,3.83382679165211,0,0,0.829312462163088,0.864719720501769,0.75745460055828,0.063497894292169,2.29193055334967,1.17217447210047,1.71072446022705,0.514137463516618,0.600686115687835,0.285826432630578,0.112131084345361,0.43596006883328,0.22001485746285,0.129271715757778,0,3.381211010224,0,1.04007436911366,0,0,0.532844358032199,0.142977993658148,0,0.823240336780769,0,0,0,2.71295439353627,0,2.39935178836937,0,0,0,1.4377491329495,1.14861935834114,0,0.579125226670317,4.10952645100767,0.358121926479791,0,0,0,0,0.254094624222463,1.30139853857622,0,0.167516265334349,0,0,0,0,0,0.500170521059677,0.271265023699736,0.623912584592421,4.28229573113188,1.26161932027148,0.937131319941706,0.601892199455438,0,0,1.32845119707087,0.921845842708516,0.347534457872331,0.195801157462741,0.686286847621712,0,0,0.106727557803444,0,0,0,0.248107807818777,0,0.280660094433074,0,0.511707249066704,0.482561763430822,0,0.308419387605311,0,0,0,0.232420756919918,0,6.41620704970512,3.49907757956406,0.114814448164607,0.182091168006717,0,0.902399225814824,1.69433741629712,3.13739907670742,5.84556898613043,1.16106791782163,2.27466768141793,1.19065593693561,0.863663664408557,0,2.16757150035082,3.51182841698397,1.27438136522519,4.98645605357235,2.68649705666614,0,0,0.769350375349168,0.984043937099117,0.650756789328606,0.309123034943167,0,0.082509499920588,1.14853107599234,5.20048196829217,0,0.096670718292122,0.308097234229289,0.15350367472613,0.275673144969061,0,0.290033387828457,0.255679882248303,0,2.64455864577565,4.22818148203234,0.638063562472921,2.32662895967765,0.464845549297286,1.88887408098384,0,0.616067160352178,0.532306030317022,0,0.18532421910392,1.00187420719394,0,0.316379424718726,1.14378116354295,0,0.855877976067841,0,0,0.179872457583315,0.274537029736055,0.471249609382746,0.404364963146632,6.34041284692033,0.421258456238981,0,0.974853958525138,2.11300293513511,0.136499911407986,0,1.13008116620243,0,0.66343897524122,1.75380354101505,0.578775534266688,0,0.405820753925408,1.54911749049875,2.25356482025793,0,0.392996164052485,0.7133421029625,0.709522128141196,0,0,0,0,2.02066436723575,6.70302275535787,9.80018863751903,0.0941438007767792,4.73555909938353,8.42357378338128,3.10401107475673,1.60806380144872,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0.19538809540204,0,0,0,0,0,0,0.146508179271894,0,0,1.42068073403207,0.23874448473769,0,0.614321404198464,0,0,0.890469640183247,0.659215496907038,0,0.19924798825107,0,0,0.409074730008619,0,0.933118762985422,0.359473404589307,0,0,0.0986434056369336,0,1.11136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| |||
|short_description=p@chr17:48141446..48141483,+ | |||
}} |
Revision as of 14:23, 11 September 2013
Short description: | p@chr17:48141446..48141483, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:48141446..48141483, + |
Coexpression cluster: | C3652_Bronchial_meningioma_papillary_Prostate_mesenchymal_Tracheal_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.00e-23 | 253 |
embryonic cell | 3.29e-18 | 250 |
endo-epithelial cell | 1.28e-14 | 42 |
epithelial cell of nephron | 9.73e-14 | 15 |
kidney tubule cell | 2.20e-12 | 10 |
nephron tubule epithelial cell | 2.20e-12 | 10 |
ecto-epithelial cell | 2.72e-12 | 34 |
respiratory epithelial cell | 2.96e-12 | 13 |
kidney cell | 9.56e-12 | 17 |
kidney epithelial cell | 9.56e-12 | 17 |
endodermal cell | 6.40e-11 | 58 |
kidney cortical cell | 7.61e-10 | 12 |
renal cortical epithelial cell | 7.61e-10 | 12 |
epithelial cell of tracheobronchial tree | 2.72e-09 | 9 |
epithelial cell of lower respiratory tract | 2.72e-09 | 9 |
general ecto-epithelial cell | 3.45e-08 | 14 |
transitional epithelial cell | 1.14e-07 | 4 |
urothelial cell | 1.14e-07 | 4 |
ectodermal cell | 1.87e-07 | 72 |
columnar/cuboidal epithelial cell | 4.44e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 9.73e-14 | 15 |
renal tubule | 9.73e-14 | 15 |
nephron tubule | 9.73e-14 | 15 |
nephron | 9.73e-14 | 15 |
uriniferous tubule | 9.73e-14 | 15 |
nephrogenic mesenchyme | 9.73e-14 | 15 |
excretory tube | 1.12e-12 | 16 |
kidney epithelium | 1.12e-12 | 16 |
nephron tubule epithelium | 2.20e-12 | 10 |
parenchyma | 2.27e-11 | 15 |
cortex of kidney | 7.61e-10 | 12 |
renal parenchyma | 7.61e-10 | 12 |
cortex | 1.77e-07 | 15 |
urinary system structure | 3.16e-07 | 47 |
transitional epithelium | 3.99e-07 | 6 |
renal system | 5.55e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 1.05e-09 | 29 |
female reproductive organ cancer | 3.89e-09 | 27 |
ovarian cancer | 3.39e-08 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.