FFCP PHASE1:Hg19::chr18:3219881..3219924,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8736|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7613|TSSclassifier=N|UniProt=P52179,A8MX12|association_with_transcript=181bp_to_ENST00000261606,ENST00000356443,ENST00000400569,NM_003803,NM_019856,uc002klp.2,uc002klq.2_5end|coexpression_cluster_id=C20|description=CAGE_peak_2_at_MYOM1_5end|id=chr18:3219881..3219924,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006603;1.73e-08;65|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.81e-64!115;UBERON:0001049!3.14e-20!57;UBERON:0005068!3.14e-20!57;UBERON:0006241!3.14e-20!57;UBERON:0007135!3.14e-20!57;UBERON:0002616!1.13e-16!59;UBERON:0003075!2.07e-16!86;UBERON:0007284!2.07e-16!86;UBERON:0003080!5.76e-16!42;UBERON:0002780!2.70e-15!41;UBERON:0001890!2.70e-15!41;UBERON:0006240!2.70e-15!41;UBERON:0002346!5.00e-15!90;UBERON:0002020!8.78e-14!34;UBERON:0003528!8.78e-14!34;UBERON:0005743!9.63e-14!86;UBERON:0001893!1.29e-13!34;UBERON:0001017!3.04e-13!82;UBERON:0000955!5.15e-13!69;UBERON:0006238!5.15e-13!69;UBERON:0002791!5.60e-13!33;UBERON:0001869!2.17e-12!32;UBERON:0000073!3.26e-11!94;UBERON:0001016!3.26e-11!94;UBERON:0003056!1.45e-10!61;UBERON:0002619!8.92e-10!22;UBERON:0000153!1.63e-09!129;UBERON:0007811!1.63e-09!129;UBERON:0000033!1.25e-08!123;UBERON:0001950!1.90e-08!20;UBERON:0000956!4.34e-08!25;UBERON:0000203!4.34e-08!25;UBERON:0002308!5.78e-08!9;UBERON:0000125!5.78e-08!9;UBERON:0002298!6.37e-08!8;UBERON:0002420!6.44e-08!9;UBERON:0007245!6.44e-08!9;UBERON:0010009!6.44e-08!9;UBERON:0010011!6.44e-08!9;UBERON:0000454!6.44e-08!9;UBERON:0004121!2.61e-07!169;UBERON:0003135!3.86e-07!11;UBERON:0000924!8.08e-07!173;UBERON:0006601!8.08e-07!173;UBERON:0000481!8.61e-07!347|ontology_enrichment_uberon_v019=UBERON:0007023;3.39e-09;114!UBERON:0004151;2.58e-08;3!UBERON:0003978;3.11e-08;3!UBERON:0000946;3.11e-08;3!UBERON:0002298;4.83e-08;6!UBERON:0001134;5.68e-08;16!UBERON:0002036;5.68e-08;16!UBERON:0000922;8.90e-08;49!UBERON:0004921;3.91e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.12e-35,114;UBERON:0003103,1.81e-08,68;UBERON:0004151,2.58e-08,3;UBERON:0003978,3.12e-08,3;UBERON:0009751,3.12e-08,3;UBERON:0000946,3.12e-08,3;UBERON:0002523,3.12e-08,3;UBERON:0005983,3.12e-08,3;UBERON:0002165,3.12e-08,3;UBERON:0002062,3.12e-08,3;UBERON:0007280,3.12e-08,3;UBERON:0002298,4.64e-08,6|phase1_expression=0.908391896352783,3.63970890614671,0.563817616383885,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.85779347979291,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,1.0478326039817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.87285243752816,1.96565443335525,8.27105869353966,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414415513436035,0.736148950314839,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,5.14715135716284,0,0,0,0,0,0,0.248107807818777,0.920771839728375,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0,1.03041011647722,0.366277859273374,0.41254749960294,0,0,0,0.096670718292122,0.154048617114644,1.5350367472613,1.51620229732984,0,0.145016693914229,1.27839941124151,25.0180020167332,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31178950409327,0,0,0.281695602532241,0,0,0,0.354761064070598,0,0.329294892959902,0,0,0,0,0,1.31801321087491,0,0,0,0,0.507447609232169,0,0,0.476463550915578,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0,12.3066870588391,0,4.34629198682166,0,0,3.26661148915902,0,0.994147647766298,0.984685914873589,0,0,0,14.345855154077,1.65770349318689,9.57344441846249,0,0,0,0,0,0,11.935852082069,0,0,0,0.278304294485554,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,0.723578631752448,0,0.552896299656123,0,0.87754158861589,0,0,3.15496059865568,0,0,0.0897576444097721,0,0,0,0,0,0.31396051279005,0,0.902382642468723,0.19606253431774,0.335643173951685,0.189753732724185,0,0,0,0,0,5.97157158647103,2.29989667708682,3.05515072466813,0,0,0,0.67401132980677,195.828945940904,0.234264445725339,0,0,0,0.789168805698781,1.209907160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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8736 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7613 | |||
|TSSclassifier=N | |||
|UniProt=P52179,A8MX12 | |||
|association_with_transcript=181bp_to_ENST00000261606,ENST00000356443,ENST00000400569,NM_003803,NM_019856,uc002klp.2,uc002klq.2_5end | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_2_at_MYOM1_5end | |||
|id=chr18:3219881..3219924,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006603;1.73e-08;65 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.81e-64!115;UBERON:0001049!3.14e-20!57;UBERON:0005068!3.14e-20!57;UBERON:0006241!3.14e-20!57;UBERON:0007135!3.14e-20!57;UBERON:0002616!1.13e-16!59;UBERON:0003075!2.07e-16!86;UBERON:0007284!2.07e-16!86;UBERON:0003080!5.76e-16!42;UBERON:0002780!2.70e-15!41;UBERON:0001890!2.70e-15!41;UBERON:0006240!2.70e-15!41;UBERON:0002346!5.00e-15!90;UBERON:0002020!8.78e-14!34;UBERON:0003528!8.78e-14!34;UBERON:0005743!9.63e-14!86;UBERON:0001893!1.29e-13!34;UBERON:0001017!3.04e-13!82;UBERON:0000955!5.15e-13!69;UBERON:0006238!5.15e-13!69;UBERON:0002791!5.60e-13!33;UBERON:0001869!2.17e-12!32;UBERON:0000073!3.26e-11!94;UBERON:0001016!3.26e-11!94;UBERON:0003056!1.45e-10!61;UBERON:0002619!8.92e-10!22;UBERON:0000153!1.63e-09!129;UBERON:0007811!1.63e-09!129;UBERON:0000033!1.25e-08!123;UBERON:0001950!1.90e-08!20;UBERON:0000956!4.34e-08!25;UBERON:0000203!4.34e-08!25;UBERON:0002308!5.78e-08!9;UBERON:0000125!5.78e-08!9;UBERON:0002298!6.37e-08!8;UBERON:0002420!6.44e-08!9;UBERON:0007245!6.44e-08!9;UBERON:0010009!6.44e-08!9;UBERON:0010011!6.44e-08!9;UBERON:0000454!6.44e-08!9;UBERON:0004121!2.61e-07!169;UBERON:0003135!3.86e-07!11;UBERON:0000924!8.08e-07!173;UBERON:0006601!8.08e-07!173;UBERON:0000481!8.61e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;3.39e-09;114!UBERON:0004151;2.58e-08;3!UBERON:0003978;3.11e-08;3!UBERON:0000946;3.11e-08;3!UBERON:0002298;4.83e-08;6!UBERON:0001134;5.68e-08;16!UBERON:0002036;5.68e-08;16!UBERON:0000922;8.90e-08;49!UBERON:0004921;3.91e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.12e-35,114;UBERON:0003103,1.81e-08,68;UBERON:0004151,2.58e-08,3;UBERON:0003978,3.12e-08,3;UBERON:0009751,3.12e-08,3;UBERON:0000946,3.12e-08,3;UBERON:0002523,3.12e-08,3;UBERON:0005983,3.12e-08,3;UBERON:0002165,3.12e-08,3;UBERON:0002062,3.12e-08,3;UBERON:0007280,3.12e-08,3;UBERON:0002298,4.64e-08,6 | |||
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|short_description=p2@MYOM1 | |||
}} |
Revision as of 17:17, 11 September 2013
Short description: | p2@MYOM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_MYOM1_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 181bp_to_ENST00000261606, ENST00000356443, ENST00000400569, NM_003803, NM_019856, uc002klp.2, uc002klq.2_5end |
EntrezGene: | MYOM1 |
HGNC: | 7613 |
UniProt: | P52179A8MX12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 2.12e-35 | 114 |
compound organ | 1.81e-08 | 68 |
cardiac chamber | 2.58e-08 | 3 |
valve | 3.12e-08 | 3 |
cardiac mesenchyme | 3.12e-08 | 3 |
cardial valve | 3.12e-08 | 3 |
tunica intima | 3.12e-08 | 3 |
heart layer | 3.12e-08 | 3 |
endocardium | 3.12e-08 | 3 |
endocardial cushion | 3.12e-08 | 3 |
presumptive endocardium | 3.12e-08 | 3 |
brainstem | 4.64e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.