FFCP PHASE1:Hg19::chr18:55816690..55816700,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23327|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=7728|TSSclassifier=W|UniProt=Q3LSM7,Q96PU5|association_with_transcript=125bp_to_ENST00000357895,ENST00000435432,NM_001144965,NM_001144968,NM_001144969,NM_001144971,uc002lhb.2,uc002lhc.2,uc002lhd.2,uc002lhe.2_5end|description=CAGE_peak_44_at_NEDD4L_5end|id=chr18:55816690..55816700,+|ontology_enrichment_celltype=CL:0000239!8.91e-10!3;CL:1000615!8.91e-10!3;CL:0002306!8.91e-10!3|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0005754;7.47e-30;1!UBERON:0003918;3.60e-26;10!UBERON:0007687;3.60e-26;10!UBERON:0007297;1.15e-15;2!UBERON:0003104;3.09e-09;31|ontology_enrichment_disease=DOID:12603!1.11e-07!1|ontology_enrichment_disease_v019=DOID:5409;2.18e-08;4|ontology_enrichment_disease_v019_2=DOID:5409,2.43e-08,4|ontology_enrichment_uberon=UBERON:0006947!9.05e-21!3;UBERON:0004054!9.05e-21!3;UBERON:0005904!1.01e-15!4;UBERON:0003887!3.00e-14!21;UBERON:0002113!3.63e-11!27;UBERON:0003918!3.63e-11!27;UBERON:0005095!3.63e-11!27;UBERON:0007687!3.63e-11!27;UBERON:0005172!4.14e-10!55;UBERON:0005173!4.14e-10!55;UBERON:0006853!8.91e-10!3;UBERON:0007685!8.91e-10!3;UBERON:0004134!8.91e-10!3;UBERON:0007023!1.22e-09!115;UBERON:0002106!2.51e-09!3;UBERON:0004854!2.51e-09!3;UBERON:0009034!2.51e-09!3;UBERON:0002095!2.51e-09!3;UBERON:0004782!2.51e-09!3;UBERON:0003281!2.51e-09!3;UBERON:0009664!2.51e-09!3;UBERON:0002296!2.51e-09!3;UBERON:0005602!2.51e-09!3;UBERON:0001179!2.51e-09!3;UBERON:0006293!2.51e-09!3;UBERON:0000489!2.75e-09!32;UBERON:0002417!6.00e-09!61;UBERON:0000916!6.00e-09!61;UBERON:0000080!6.46e-09!18;UBERON:0002120!6.46e-09!18;UBERON:0004875!6.46e-09!18;UBERON:0005721!6.46e-09!18;UBERON:0005754!6.46e-09!18;UBERON:0007297!6.46e-09!18;UBERON:0000058!1.28e-08!26;UBERON:0004177!1.43e-08!7;UBERON:0006554!1.96e-08!44;UBERON:0000998!2.70e-08!1;UBERON:0006868!2.70e-08!1;UBERON:0001000!2.89e-08!1;UBERON:0005352!2.89e-08!1;UBERON:0001008!3.21e-08!45;UBERON:0004876!5.32e-08!20;UBERON:0001154!6.10e-08!1;UBERON:0001153!6.10e-08!1;UBERON:0001831!6.52e-08!1;UBERON:0001567!6.52e-08!1;UBERON:0008801!6.52e-08!1;UBERON:0000945!9.26e-08!8;UBERON:0010039!9.26e-08!8;UBERON:0001301!1.18e-07!1;UBERON:0002553!1.49e-07!70;UBERON:0002022!1.99e-07!1;UBERON:0000464!9.80e-07!104|ontology_enrichment_uberon_v019=UBERON:0006947;1.12e-38;3!UBERON:0004054;1.12e-38;3!UBERON:0000998;7.47e-30;1!UBERON:0006868;7.47e-30;1!UBERON:0001000;2.05e-29;1!UBERON:0005352;2.05e-29;1!UBERON:0005904;2.55e-29;4!UBERON:0000058;2.18e-12;10!UBERON:0003135;2.36e-11;11|ontology_enrichment_uberon_v019_2=UBERON:0006947,6.91e-39,3;UBERON:0004054,6.91e-39,3;UBERON:0000998,7.48e-30,1;UBERON:0006868,7.48e-30,1;UBERON:0001000,9.99e-30,1;UBERON:0005352,9.99e-30,1;UBERON:0005904,1.78e-29,4;UBERON:0003135,2.07e-11,11;UBERON:0002113,1.55e-10,26;UBERON:0003918,1.55e-10,26;UBERON:0011143,1.55e-10,26;UBERON:0005095,1.55e-10,26;UBERON:0007687,1.55e-10,26;UBERON:0000489,6.01e-09,31;UBERON:0000058,5.34e-07,19|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,1.57611414598396,1.20645552710496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0.682986574053893,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23327 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7728 | |||
|TSSclassifier=W | |||
|UniProt=Q3LSM7,Q96PU5 | |||
|association_with_transcript=125bp_to_ENST00000357895,ENST00000435432,NM_001144965,NM_001144968,NM_001144969,NM_001144971,uc002lhb.2,uc002lhc.2,uc002lhd.2,uc002lhe.2_5end | |||
|description=CAGE_peak_44_at_NEDD4L_5end | |||
|id=chr18:55816690..55816700,+ | |||
|ontology_enrichment_celltype=CL:0000239!8.91e-10!3;CL:1000615!8.91e-10!3;CL:0002306!8.91e-10!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005754;7.47e-30;1!UBERON:0003918;3.60e-26;10!UBERON:0007687;3.60e-26;10!UBERON:0007297;1.15e-15;2!UBERON:0003104;3.09e-09;31 | |||
|ontology_enrichment_disease=DOID:12603!1.11e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:5409;2.18e-08;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5409,2.43e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0006947!9.05e-21!3;UBERON:0004054!9.05e-21!3;UBERON:0005904!1.01e-15!4;UBERON:0003887!3.00e-14!21;UBERON:0002113!3.63e-11!27;UBERON:0003918!3.63e-11!27;UBERON:0005095!3.63e-11!27;UBERON:0007687!3.63e-11!27;UBERON:0005172!4.14e-10!55;UBERON:0005173!4.14e-10!55;UBERON:0006853!8.91e-10!3;UBERON:0007685!8.91e-10!3;UBERON:0004134!8.91e-10!3;UBERON:0007023!1.22e-09!115;UBERON:0002106!2.51e-09!3;UBERON:0004854!2.51e-09!3;UBERON:0009034!2.51e-09!3;UBERON:0002095!2.51e-09!3;UBERON:0004782!2.51e-09!3;UBERON:0003281!2.51e-09!3;UBERON:0009664!2.51e-09!3;UBERON:0002296!2.51e-09!3;UBERON:0005602!2.51e-09!3;UBERON:0001179!2.51e-09!3;UBERON:0006293!2.51e-09!3;UBERON:0000489!2.75e-09!32;UBERON:0002417!6.00e-09!61;UBERON:0000916!6.00e-09!61;UBERON:0000080!6.46e-09!18;UBERON:0002120!6.46e-09!18;UBERON:0004875!6.46e-09!18;UBERON:0005721!6.46e-09!18;UBERON:0005754!6.46e-09!18;UBERON:0007297!6.46e-09!18;UBERON:0000058!1.28e-08!26;UBERON:0004177!1.43e-08!7;UBERON:0006554!1.96e-08!44;UBERON:0000998!2.70e-08!1;UBERON:0006868!2.70e-08!1;UBERON:0001000!2.89e-08!1;UBERON:0005352!2.89e-08!1;UBERON:0001008!3.21e-08!45;UBERON:0004876!5.32e-08!20;UBERON:0001154!6.10e-08!1;UBERON:0001153!6.10e-08!1;UBERON:0001831!6.52e-08!1;UBERON:0001567!6.52e-08!1;UBERON:0008801!6.52e-08!1;UBERON:0000945!9.26e-08!8;UBERON:0010039!9.26e-08!8;UBERON:0001301!1.18e-07!1;UBERON:0002553!1.49e-07!70;UBERON:0002022!1.99e-07!1;UBERON:0000464!9.80e-07!104 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;1.12e-38;3!UBERON:0004054;1.12e-38;3!UBERON:0000998;7.47e-30;1!UBERON:0006868;7.47e-30;1!UBERON:0001000;2.05e-29;1!UBERON:0005352;2.05e-29;1!UBERON:0005904;2.55e-29;4!UBERON:0000058;2.18e-12;10!UBERON:0003135;2.36e-11;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,6.91e-39,3;UBERON:0004054,6.91e-39,3;UBERON:0000998,7.48e-30,1;UBERON:0006868,7.48e-30,1;UBERON:0001000,9.99e-30,1;UBERON:0005352,9.99e-30,1;UBERON:0005904,1.78e-29,4;UBERON:0003135,2.07e-11,11;UBERON:0002113,1.55e-10,26;UBERON:0003918,1.55e-10,26;UBERON:0011143,1.55e-10,26;UBERON:0005095,1.55e-10,26;UBERON:0007687,1.55e-10,26;UBERON:0000489,6.01e-09,31;UBERON:0000058,5.34e-07,19 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,0,0,0,0,0,1.57833761139756,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,1.57611414598396,1.20645552710496,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21792598380896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,0,0,0,0,0,0,0.682986574053893,0,0,0,0,0,0,0,0.235479278551542,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29068207646083,0,0,2.9637093513365,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20770274853339,0.0771741581079447,0,0.940634592723046,0,0,0,0,0,0,0.0939839179798536,0.193373663920732,0,0,0,0,0.730336388246517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,0.0645889098360061,0,0,0,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p44@NEDD4L | |||
}} |
Revision as of 17:50, 11 September 2013
Short description: | p44@NEDD4L |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_44_at_NEDD4L_5end |
Coexpression cluster: | NA |
Association with transcript: | 125bp_to_ENST00000357895, ENST00000435432, NM_001144965, NM_001144968, NM_001144969, NM_001144971, uc002lhb.2, uc002lhc.2, uc002lhd.2, uc002lhe.2_5end |
EntrezGene: | NEDD4L |
HGNC: | 7728 |
UniProt: | Q3LSM7Q96PU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
male genital duct | 6.91e-39 | 3 |
internal male genitalia | 6.91e-39 | 3 |
seminal vesicle | 7.48e-30 | 1 |
seminal fluid secreting gland | 7.48e-30 | 1 |
vas deferens | 9.99e-30 | 1 |
spermatic cord | 9.99e-30 | 1 |
duct of male reproductive system | 1.78e-29 | 4 |
male reproductive organ | 2.07e-11 | 11 |
kidney | 1.55e-10 | 26 |
kidney mesenchyme | 1.55e-10 | 26 |
upper urinary tract | 1.55e-10 | 26 |
kidney rudiment | 1.55e-10 | 26 |
kidney field | 1.55e-10 | 26 |
cavitated compound organ | 6.01e-09 | 31 |
duct | 5.34e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 2.43e-08 | 4 |
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