FFCP PHASE1:Hg19::chr19:17905594..17905645,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10331|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13528|TSSclassifier=S|UniProt=|association_with_transcript=-12bp_to_uc002nhk.1_5end|coexpression_cluster_id=C3765|description=CAGE_peak_2_at_B3GNT3_5end|id=chr19:17905594..17905645,+|ontology_enrichment_celltype=CL:0000066!2.47e-23!254;CL:0000223!8.28e-14!59;CL:0002076!8.59e-12!43;CL:0002251!5.95e-09!21|ontology_enrichment_celltype_v019=CL:1000415;3.08e-07;2|ontology_enrichment_celltype_v019_2=CL:0000066,8.16e-08,253;CL:1000415,3.14e-07,2|ontology_enrichment_development_v019=UBERON:0009497;4.98e-10;13!UBERON:0006595;1.39e-08;86!UBERON:0001041;1.08e-07;30|ontology_enrichment_disease=DOID:305!9.20e-28!106;DOID:0050687!2.27e-19!143;DOID:299!1.49e-13!25;DOID:162!2.94e-10!235;DOID:14566!1.28e-09!239;DOID:1749!3.79e-07!14|ontology_enrichment_disease_v019=DOID:299;7.05e-13;25!DOID:3493;2.37e-07;2!DOID:4929;2.52e-07;2|ontology_enrichment_disease_v019_2=DOID:305,3.22e-17,106;DOID:299,6.45e-13,25;DOID:0050687,7.32e-12,143;DOID:4929,2.69e-07,2;DOID:3493,2.77e-07,2|ontology_enrichment_uberon=UBERON:0004119!4.20e-31!169;UBERON:0000925!4.20e-31!169;UBERON:0006595!4.20e-31!169;UBERON:0001007!1.44e-28!155;UBERON:0001555!1.44e-28!155;UBERON:0007026!1.44e-28!155;UBERON:0004921!1.90e-27!129;UBERON:0004185!1.90e-27!129;UBERON:0000077!8.49e-24!130;UBERON:0001041!5.39e-18!98;UBERON:0001004!7.75e-13!72;UBERON:0005409!7.82e-12!35;UBERON:0005911!6.40e-11!82;UBERON:0000065!1.55e-10!53;UBERON:0000466!3.05e-10!126;UBERON:0000160!1.63e-09!27;UBERON:0008947!1.70e-09!38;UBERON:0003258!1.70e-09!38;UBERON:0005177!2.21e-09!107;UBERON:0003104!2.23e-09!238;UBERON:0009142!2.23e-09!238;UBERON:0000072!1.26e-08!46;UBERON:0000464!7.97e-08!104;UBERON:0000161!1.20e-07!35;UBERON:0002294!2.79e-07!7;UBERON:0001173!2.79e-07!7;UBERON:0004912!2.79e-07!7;UBERON:0005631!3.49e-07!14;UBERON:0000158!3.49e-07!14;UBERON:0001737!4.75e-07!9;UBERON:0003929!8.57e-07!54|ontology_enrichment_uberon_v019=UBERON:0005409;3.31e-20;22!UBERON:0002294;9.37e-16;7!UBERON:0001173;9.37e-16;7!UBERON:0000160;2.32e-15;17!UBERON:0004921;1.00e-14;33!UBERON:0002108;7.29e-11;4!UBERON:0002110;3.56e-10;3!UBERON:0002423;6.37e-10;25!UBERON:0002394;1.26e-07;4!UBERON:0003928;1.26e-07;4!UBERON:0000058;1.34e-07;10!UBERON:0001007;2.23e-07;81|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.64e-17,25;UBERON:0000160,2.10e-15,17;UBERON:0001007,1.11e-14,145;UBERON:0001555,1.11e-14,145;UBERON:0007026,1.11e-14,145;UBERON:0004119,1.17e-14,160;UBERON:0000925,1.17e-14,160;UBERON:0006595,1.17e-14,160;UBERON:0004921,2.21e-13,118;UBERON:0002294,4.55e-12,9;UBERON:0001173,4.55e-12,9;UBERON:0004912,4.55e-12,9;UBERON:0002108,7.04e-11,4;UBERON:0002110,3.46e-10,3;UBERON:0006242,3.46e-10,3;UBERON:0009497,5.42e-10,25;UBERON:0000015,5.42e-10,25;UBERON:0002423,5.42e-10,25;UBERON:0006235,5.42e-10,25;UBERON:0004161,5.42e-10,25;UBERON:0005911,3.19e-07,82;UBERON:0009854,8.64e-07,23|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0.655324116390517,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12586938479627,0.818238361772504,0.860413786167011,0.487894824518382,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.236613600079688,0.337169380156203,0.241011029883482,0.220587945464788,0.217879444092406,0.474541238222193,0.269662616320329,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,2.7057456479485,0,0.219500570817251,1.1240175325762,0.201057944823262,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0.858486162094873,0,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0.736647911487171,0,0,0,1.35359883872224,0.462092022626489,0,0,0,0,0,0,0,0,0,0.764628819135115,1.66215201785745,0.223874754722178,0,0,0,0,0,2.98818933778395,0,0,1.14853107599234,0,0,0,0,0,0,0,0,0,0,0.826424576804891,0,0.765676274967505,0.6069466851333,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384888450902048,0,0,2.2594512186427,0,0,1.7737206141467,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.191505370132367,0,0,0,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.36277837387947,0.293016358543788,0,0.111443384277478,0,13.6084356300483,2.37571744666111,33.7876772309155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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10331 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13528 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_uc002nhk.1_5end | |||
|coexpression_cluster_id=C3765 | |||
|description=CAGE_peak_2_at_B3GNT3_5end | |||
|id=chr19:17905594..17905645,+ | |||
|ontology_enrichment_celltype=CL:0000066!2.47e-23!254;CL:0000223!8.28e-14!59;CL:0002076!8.59e-12!43;CL:0002251!5.95e-09!21 | |||
|ontology_enrichment_celltype_v019=CL:1000415;3.08e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.16e-08,253;CL:1000415,3.14e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0009497;4.98e-10;13!UBERON:0006595;1.39e-08;86!UBERON:0001041;1.08e-07;30 | |||
|ontology_enrichment_disease=DOID:305!9.20e-28!106;DOID:0050687!2.27e-19!143;DOID:299!1.49e-13!25;DOID:162!2.94e-10!235;DOID:14566!1.28e-09!239;DOID:1749!3.79e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:299;7.05e-13;25!DOID:3493;2.37e-07;2!DOID:4929;2.52e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.22e-17,106;DOID:299,6.45e-13,25;DOID:0050687,7.32e-12,143;DOID:4929,2.69e-07,2;DOID:3493,2.77e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.20e-31!169;UBERON:0000925!4.20e-31!169;UBERON:0006595!4.20e-31!169;UBERON:0001007!1.44e-28!155;UBERON:0001555!1.44e-28!155;UBERON:0007026!1.44e-28!155;UBERON:0004921!1.90e-27!129;UBERON:0004185!1.90e-27!129;UBERON:0000077!8.49e-24!130;UBERON:0001041!5.39e-18!98;UBERON:0001004!7.75e-13!72;UBERON:0005409!7.82e-12!35;UBERON:0005911!6.40e-11!82;UBERON:0000065!1.55e-10!53;UBERON:0000466!3.05e-10!126;UBERON:0000160!1.63e-09!27;UBERON:0008947!1.70e-09!38;UBERON:0003258!1.70e-09!38;UBERON:0005177!2.21e-09!107;UBERON:0003104!2.23e-09!238;UBERON:0009142!2.23e-09!238;UBERON:0000072!1.26e-08!46;UBERON:0000464!7.97e-08!104;UBERON:0000161!1.20e-07!35;UBERON:0002294!2.79e-07!7;UBERON:0001173!2.79e-07!7;UBERON:0004912!2.79e-07!7;UBERON:0005631!3.49e-07!14;UBERON:0000158!3.49e-07!14;UBERON:0001737!4.75e-07!9;UBERON:0003929!8.57e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;3.31e-20;22!UBERON:0002294;9.37e-16;7!UBERON:0001173;9.37e-16;7!UBERON:0000160;2.32e-15;17!UBERON:0004921;1.00e-14;33!UBERON:0002108;7.29e-11;4!UBERON:0002110;3.56e-10;3!UBERON:0002423;6.37e-10;25!UBERON:0002394;1.26e-07;4!UBERON:0003928;1.26e-07;4!UBERON:0000058;1.34e-07;10!UBERON:0001007;2.23e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,1.64e-17,25;UBERON:0000160,2.10e-15,17;UBERON:0001007,1.11e-14,145;UBERON:0001555,1.11e-14,145;UBERON:0007026,1.11e-14,145;UBERON:0004119,1.17e-14,160;UBERON:0000925,1.17e-14,160;UBERON:0006595,1.17e-14,160;UBERON:0004921,2.21e-13,118;UBERON:0002294,4.55e-12,9;UBERON:0001173,4.55e-12,9;UBERON:0004912,4.55e-12,9;UBERON:0002108,7.04e-11,4;UBERON:0002110,3.46e-10,3;UBERON:0006242,3.46e-10,3;UBERON:0009497,5.42e-10,25;UBERON:0000015,5.42e-10,25;UBERON:0002423,5.42e-10,25;UBERON:0006235,5.42e-10,25;UBERON:0004161,5.42e-10,25;UBERON:0005911,3.19e-07,82;UBERON:0009854,8.64e-07,23 | |||
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|short_description=p2@B3GNT3 | |||
}} |
Revision as of 19:20, 11 September 2013
Short description: | p2@B3GNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_B3GNT3_5end |
Coexpression cluster: | C3765_amniotic_colon_Alveolar_duodenum_small_mucinous_stomach |
Association with transcript: | -12bp_to_uc002nhk.1_5end |
EntrezGene: | B3GNT3 |
HGNC: | 13528 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.16e-08 | 253 |
epithelial cell of gall bladder | 3.14e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 1.64e-17 | 25 |
intestine | 2.10e-15 | 17 |
digestive system | 1.11e-14 | 145 |
digestive tract | 1.11e-14 | 145 |
primitive gut | 1.11e-14 | 145 |
endoderm-derived structure | 1.17e-14 | 160 |
endoderm | 1.17e-14 | 160 |
presumptive endoderm | 1.17e-14 | 160 |
subdivision of digestive tract | 2.21e-13 | 118 |
biliary system | 4.55e-12 | 9 |
biliary tree | 4.55e-12 | 9 |
biliary bud | 4.55e-12 | 9 |
small intestine | 7.04e-11 | 4 |
gallbladder | 3.46e-10 | 3 |
gall bladder primordium | 3.46e-10 | 3 |
epithelium of foregut-midgut junction | 5.42e-10 | 25 |
anatomical boundary | 5.42e-10 | 25 |
hepatobiliary system | 5.42e-10 | 25 |
foregut-midgut junction | 5.42e-10 | 25 |
septum transversum | 5.42e-10 | 25 |
endo-epithelium | 3.19e-07 | 82 |
digestive tract diverticulum | 8.64e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.22e-17 | 106 |
adenocarcinoma | 6.45e-13 | 25 |
cell type cancer | 7.32e-12 | 143 |
tubular adenocarcinoma | 2.69e-07 | 2 |
signet ring cell adenocarcinoma | 2.77e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.