FFCP PHASE1:Hg19::chr19:39303110..39303129,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C190|description=CAGE_peak_at_chr19:39303110..39303129,-|id=chr19:39303110..39303129,-|ontology_enrichment_celltype=CL:0002178!1.68e-11!3|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006242;8.02e-16;1!UBERON:0001045;1.24e-15;1|ontology_enrichment_disease=DOID:3493!1.05e-16!2;DOID:299!7.43e-08!25|ontology_enrichment_disease_v019=DOID:299;3.04e-09;25!DOID:3493;2.57e-08;2!DOID:4929;2.97e-08;2|ontology_enrichment_disease_v019_2=DOID:299,3.08e-09,25;DOID:3493,2.67e-08,2;DOID:4929,2.87e-08,2|ontology_enrichment_uberon=UBERON:0005409!4.33e-21!35;UBERON:0000160!8.37e-18!27;UBERON:0001155!5.50e-15!9;UBERON:0001007!1.79e-13!155;UBERON:0001555!1.79e-13!155;UBERON:0007026!1.79e-13!155;UBERON:0004921!6.29e-13!129;UBERON:0004185!6.29e-13!129;UBERON:0000059!2.71e-12!11;UBERON:0004119!4.27e-12!169;UBERON:0000925!4.27e-12!169;UBERON:0006595!4.27e-12!169;UBERON:0009854!5.65e-12!23;UBERON:0009497!5.20e-11!25;UBERON:0000015!5.20e-11!25;UBERON:0002423!5.20e-11!25;UBERON:0006235!5.20e-11!25;UBERON:0004161!5.20e-11!25;UBERON:0009856!1.54e-10!26;UBERON:0002107!3.03e-10!19;UBERON:0006925!3.03e-10!19;UBERON:0008836!3.03e-10!19;UBERON:0001154!1.32e-09!1;UBERON:0001153!1.32e-09!1;UBERON:0002426!2.77e-09!1;UBERON:0003831!2.77e-09!1;UBERON:0003898!2.77e-09!1;UBERON:0004830!2.77e-09!1;UBERON:0001774!2.77e-09!1;UBERON:0003830!2.77e-09!1;UBERON:0005175!2.77e-09!1;UBERON:0003897!2.77e-09!1;UBERON:0001103!2.77e-09!1;UBERON:0010084!2.77e-09!1;UBERON:0000998!3.25e-09!1;UBERON:0006868!3.25e-09!1;UBERON:0002108!5.47e-09!14;UBERON:0008835!7.95e-09!22;UBERON:0003894!7.95e-09!22;UBERON:0000949!8.22e-08!45;UBERON:0007499!9.58e-08!25;UBERON:0002368!1.29e-07!35;UBERON:0005057!1.93e-07!26|ontology_enrichment_uberon_v019=UBERON:0005409;5.49e-39;22!UBERON:0000160;2.04e-38;17!UBERON:0002108;1.89e-26;4!UBERON:0001155;9.54e-26;9!UBERON:0004921;1.45e-22;33!UBERON:0000059;3.85e-21;11!UBERON:0001154;1.24e-15;1!UBERON:0001153;1.24e-15;1!UBERON:0009854;1.24e-15;1!UBERON:0001555;5.26e-09;54!UBERON:0001007;3.24e-07;81|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.04e-38,17;UBERON:0005409,2.06e-34,25;UBERON:0002108,1.98e-26,4;UBERON:0001155,9.24e-26,9;UBERON:0000059,3.75e-21,11;UBERON:0001154,1.34e-15,1;UBERON:0001153,1.34e-15,1;UBERON:0001045,1.34e-15,1;UBERON:0004921,8.17e-09,118;UBERON:0001007,9.83e-09,145;UBERON:0001555,9.83e-09,145;UBERON:0007026,9.83e-09,145;UBERON:0004119,8.18e-08,160;UBERON:0000925,8.18e-08,160;UBERON:0006595,8.18e-08,160|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,2.43282702530686,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14425873296722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.96209544862804,3.98059040265026,18.9419344929424,0,0,0,0,0.802577647298789,0,0,0,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.1112138000954,0,3.60226042885265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,2.07260472469858,0,0,0,0,0,0,0,0,0,0,3.93588206350518,8.08670373864642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6966441723696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.61685363791856,0,0,0,0,0,0|short_description=p@chr19:39303110..39303129,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C190 | |||
|description=CAGE_peak_at_chr19:39303110..39303129,- | |||
|id=chr19:39303110..39303129,- | |||
|ontology_enrichment_celltype=CL:0002178!1.68e-11!3 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006242;8.02e-16;1!UBERON:0001045;1.24e-15;1 | |||
|ontology_enrichment_disease=DOID:3493!1.05e-16!2;DOID:299!7.43e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:299;3.04e-09;25!DOID:3493;2.57e-08;2!DOID:4929;2.97e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.08e-09,25;DOID:3493,2.67e-08,2;DOID:4929,2.87e-08,2 | |||
|ontology_enrichment_uberon=UBERON:0005409!4.33e-21!35;UBERON:0000160!8.37e-18!27;UBERON:0001155!5.50e-15!9;UBERON:0001007!1.79e-13!155;UBERON:0001555!1.79e-13!155;UBERON:0007026!1.79e-13!155;UBERON:0004921!6.29e-13!129;UBERON:0004185!6.29e-13!129;UBERON:0000059!2.71e-12!11;UBERON:0004119!4.27e-12!169;UBERON:0000925!4.27e-12!169;UBERON:0006595!4.27e-12!169;UBERON:0009854!5.65e-12!23;UBERON:0009497!5.20e-11!25;UBERON:0000015!5.20e-11!25;UBERON:0002423!5.20e-11!25;UBERON:0006235!5.20e-11!25;UBERON:0004161!5.20e-11!25;UBERON:0009856!1.54e-10!26;UBERON:0002107!3.03e-10!19;UBERON:0006925!3.03e-10!19;UBERON:0008836!3.03e-10!19;UBERON:0001154!1.32e-09!1;UBERON:0001153!1.32e-09!1;UBERON:0002426!2.77e-09!1;UBERON:0003831!2.77e-09!1;UBERON:0003898!2.77e-09!1;UBERON:0004830!2.77e-09!1;UBERON:0001774!2.77e-09!1;UBERON:0003830!2.77e-09!1;UBERON:0005175!2.77e-09!1;UBERON:0003897!2.77e-09!1;UBERON:0001103!2.77e-09!1;UBERON:0010084!2.77e-09!1;UBERON:0000998!3.25e-09!1;UBERON:0006868!3.25e-09!1;UBERON:0002108!5.47e-09!14;UBERON:0008835!7.95e-09!22;UBERON:0003894!7.95e-09!22;UBERON:0000949!8.22e-08!45;UBERON:0007499!9.58e-08!25;UBERON:0002368!1.29e-07!35;UBERON:0005057!1.93e-07!26 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;5.49e-39;22!UBERON:0000160;2.04e-38;17!UBERON:0002108;1.89e-26;4!UBERON:0001155;9.54e-26;9!UBERON:0004921;1.45e-22;33!UBERON:0000059;3.85e-21;11!UBERON:0001154;1.24e-15;1!UBERON:0001153;1.24e-15;1!UBERON:0009854;1.24e-15;1!UBERON:0001555;5.26e-09;54!UBERON:0001007;3.24e-07;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.04e-38,17;UBERON:0005409,2.06e-34,25;UBERON:0002108,1.98e-26,4;UBERON:0001155,9.24e-26,9;UBERON:0000059,3.75e-21,11;UBERON:0001154,1.34e-15,1;UBERON:0001153,1.34e-15,1;UBERON:0001045,1.34e-15,1;UBERON:0004921,8.17e-09,118;UBERON:0001007,9.83e-09,145;UBERON:0001555,9.83e-09,145;UBERON:0007026,9.83e-09,145;UBERON:0004119,8.18e-08,160;UBERON:0000925,8.18e-08,160;UBERON:0006595,8.18e-08,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,2.43282702530686,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14425873296722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.96209544862804,3.98059040265026,18.9419344929424,0,0,0,0,0.802577647298789,0,0,0,0,0,4.83962864194656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.1112138000954,0,3.60226042885265,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295282444544246,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293104467356165,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,2.07260472469858,0,0,0,0,0,0,0,0,0,0,3.93588206350518,8.08670373864642,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.6966441723696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0.0717222053926763,0,0,0,0,1.61685363791856,0,0,0,0,0,0 | |||
|short_description=p@chr19:39303110..39303129,- | |||
}} |
Revision as of 20:29, 11 September 2013
Short description: | p@chr19:39303110..39303129, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr19:39303110..39303129, - |
Coexpression cluster: | C190_colon_small_rectum_duodenum_appendix_temporal_oral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 2.04e-38 | 17 |
gastrointestinal system | 2.06e-34 | 25 |
small intestine | 1.98e-26 | 4 |
colon | 9.24e-26 | 9 |
large intestine | 3.75e-21 | 11 |
vermiform appendix | 1.34e-15 | 1 |
caecum | 1.34e-15 | 1 |
midgut | 1.34e-15 | 1 |
subdivision of digestive tract | 8.17e-09 | 118 |
digestive system | 9.83e-09 | 145 |
digestive tract | 9.83e-09 | 145 |
primitive gut | 9.83e-09 | 145 |
endoderm-derived structure | 8.18e-08 | 160 |
endoderm | 8.18e-08 | 160 |
presumptive endoderm | 8.18e-08 | 160 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.08e-09 | 25 |
signet ring cell adenocarcinoma | 2.67e-08 | 2 |
tubular adenocarcinoma | 2.87e-08 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.