FFCP PHASE1:Hg19::chr19:4279282..4279293,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56961|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=30633|TSSclassifier=N|UniProt=Q96IW2|association_with_transcript=-365bp_to_AK055673_5end|coexpression_cluster_id=C1241|description=CAGE_peak_11_at_SHD_5end|id=chr19:4279282..4279293,+|ontology_enrichment_celltype=CL:0000188!1.05e-26!9;CL:0000784!9.03e-08!3;CL:0000594!1.99e-07!3|ontology_enrichment_celltype_v019=CL:0000333;3.86e-33;5!CL:0002321;1.58e-11;15!CL:0000123;2.85e-10;2!CL:0002575;2.85e-10;2!CL:0000242;2.85e-10;2!CL:0000188;4.09e-09;9!CL:0000784;2.88e-07;3|ontology_enrichment_celltype_v019_2=CL:0002575,2.72e-10,2;CL:0000242,3.58e-10,2;CL:0000188,3.92e-09,9;CL:0000784,3.16e-07,3;CL:0000333,5.04e-07,41|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:169!4.62e-14!6;DOID:171!1.84e-08!10|ontology_enrichment_disease_v019=DOID:169;9.33e-28;6!DOID:171;5.86e-17;10!DOID:3095;1.72e-13;22!DOID:2994;1.72e-13;22|ontology_enrichment_disease_v019_2=DOID:169,1.02e-27,6;DOID:171,6.19e-17,10;DOID:3095,1.64e-13,22;DOID:2994,1.64e-13,22|ontology_enrichment_uberon=UBERON:0000013!7.50e-17!5;UBERON:0002410!7.50e-17!5;UBERON:0000010!2.13e-09!8;UBERON:0000988!2.50e-07!3|ontology_enrichment_uberon_v019=UBERON:0000013;3.86e-33;5!UBERON:0002410;3.86e-33;5!UBERON:0000010;9.21e-19;8|ontology_enrichment_uberon_v019_2=UBERON:0000013,4.31e-33,5;UBERON:0002410,4.31e-33,5;UBERON:0000010,9.79e-19,8|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,1.43094374583205,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71571711905428,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67348729510063,0.154048617114644,0.307007349452259,0.964856007391714,0,0.145016693914229,0.170453254832202,4.45160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40500471742064,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04630994085843,4.42081726726395,0.157265941855896,1.52893493468819,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79055697645231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90047751517155,0,0,0,0,0,0,0,0,0,0.952257725854961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p11@SHD}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=56961 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30633 | |||
|TSSclassifier=N | |||
|UniProt=Q96IW2 | |||
|association_with_transcript=-365bp_to_AK055673_5end | |||
|coexpression_cluster_id=C1241 | |||
|description=CAGE_peak_11_at_SHD_5end | |||
|id=chr19:4279282..4279293,+ | |||
|ontology_enrichment_celltype=CL:0000188!1.05e-26!9;CL:0000784!9.03e-08!3;CL:0000594!1.99e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000333;3.86e-33;5!CL:0002321;1.58e-11;15!CL:0000123;2.85e-10;2!CL:0002575;2.85e-10;2!CL:0000242;2.85e-10;2!CL:0000188;4.09e-09;9!CL:0000784;2.88e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002575,2.72e-10,2;CL:0000242,3.58e-10,2;CL:0000188,3.92e-09,9;CL:0000784,3.16e-07,3;CL:0000333,5.04e-07,41 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:169!4.62e-14!6;DOID:171!1.84e-08!10 | |||
|ontology_enrichment_disease_v019=DOID:169;9.33e-28;6!DOID:171;5.86e-17;10!DOID:3095;1.72e-13;22!DOID:2994;1.72e-13;22 | |||
|ontology_enrichment_disease_v019_2=DOID:169,1.02e-27,6;DOID:171,6.19e-17,10;DOID:3095,1.64e-13,22;DOID:2994,1.64e-13,22 | |||
|ontology_enrichment_uberon=UBERON:0000013!7.50e-17!5;UBERON:0002410!7.50e-17!5;UBERON:0000010!2.13e-09!8;UBERON:0000988!2.50e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000013;3.86e-33;5!UBERON:0002410;3.86e-33;5!UBERON:0000010;9.21e-19;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,4.31e-33,5;UBERON:0002410,4.31e-33,5;UBERON:0000010,9.79e-19,8 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526768169550154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,1.43094374583205,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71571711905428,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.67348729510063,0.154048617114644,0.307007349452259,0.964856007391714,0,0.145016693914229,0.170453254832202,4.45160178233687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33307196799782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.225980740780532,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.40500471742064,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.20022211730523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04630994085843,4.42081726726395,0.157265941855896,1.52893493468819,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0,0,0.464965701472501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79055697645231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.90047751517155,0,0,0,0,0,0,0,0,0,0.952257725854961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p11@SHD | |||
}} |
Revision as of 20:55, 11 September 2013
Short description: | p11@SHD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_SHD_5end |
Coexpression cluster: | C1241_neuroblastoma_small_Skeletal_Dendritic_Pericytes_merkel_mesenchymal |
Association with transcript: | -365bp_to_AK055673_5end |
EntrezGene: | SHD |
HGNC: | 30633 |
UniProt: | Q96IW2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
central nervous system pericyte | 2.72e-10 | 2 |
Merkel cell | 3.58e-10 | 2 |
cell of skeletal muscle | 3.92e-09 | 9 |
plasmacytoid dendritic cell | 3.16e-07 | 3 |
migratory neural crest cell | 5.04e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 4.31e-33 | 5 |
autonomic nervous system | 4.31e-33 | 5 |
peripheral nervous system | 9.79e-19 | 8 |
Ontology term | p-value | n |
---|---|---|
neuroendocrine tumor | 1.02e-27 | 6 |
neuroectodermal tumor | 6.19e-17 | 10 |
germ cell and embryonal cancer | 1.64e-13 | 22 |
germ cell cancer | 1.64e-13 | 22 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.