FFCP PHASE1:Hg19::chr3:129279919..129279942,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=23129|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9107|TSSclassifier=S|UniProt=|association_with_transcript=-20bp_to_ENST00000506979_5end|coexpression_cluster_id=C2718|description=CAGE_peak_11_at_PLXND1_5end|id=chr3:129279919..129279942,-|ontology_enrichment_celltype=CL:0000055!1.14e-31!180;CL:0000057!6.59e-20!75;CL:0002620!7.11e-15!23;CL:0000183!6.56e-10!59;CL:0000680!1.06e-09!57;CL:0000056!1.06e-09!57;CL:0000355!1.06e-09!57;CL:0000187!1.02e-08!54;CL:0000393!1.03e-07!60;CL:0000211!1.03e-07!60|ontology_enrichment_celltype_v019=CL:0002620;1.10e-25;23!CL:0000057;3.27e-09;73!CL:0002556;6.28e-08;6!CL:0002559;9.62e-07;5|ontology_enrichment_celltype_v019_2=CL:0002620,5.61e-26,23;CL:0000057,1.94e-21,76;CL:0002556,7.82e-08,6;CL:0000346,7.41e-07,3;CL:1000428,7.41e-07,3;CL:0002320,8.12e-07,361;CL:0002559,8.62e-07,5|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!2.15e-16!83;UBERON:0002329!2.15e-16!83;UBERON:0003077!2.15e-16!83;UBERON:0003059!2.15e-16!83;UBERON:0007282!2.15e-16!83;UBERON:0009618!2.15e-16!83;UBERON:0007285!2.15e-16!83;UBERON:0004290!6.67e-13!70;UBERON:0005256!5.22e-12!143;UBERON:0000475!2.59e-11!365;UBERON:0000486!9.94e-11!82;UBERON:0002097!3.27e-10!40;UBERON:0003102!4.08e-10!95;UBERON:0002199!6.59e-10!45;UBERON:0002416!6.59e-10!45;UBERON:0002385!5.33e-09!63;UBERON:0001015!5.33e-09!63;UBERON:0000383!5.33e-09!63;UBERON:0001134!1.27e-08!61;UBERON:0002036!1.27e-08!61;UBERON:0003082!1.27e-08!61;UBERON:0002100!2.85e-08!216;UBERON:0002067!2.73e-07!9;UBERON:0004016!2.73e-07!9;UBERON:0010083!2.73e-07!9|ontology_enrichment_uberon_v019=UBERON:0002097;3.34e-14;41!UBERON:0003102;1.62e-10;50!UBERON:0002199;2.03e-10;46!UBERON:0002416;2.03e-10;46!UBERON:0002067;8.69e-10;9!UBERON:0001434;1.07e-08;36!UBERON:0000075;5.88e-08;16!UBERON:0001758;6.28e-08;6!UBERON:0003672;6.28e-08;6!UBERON:0002384;3.84e-07;198!UBERON:0002073;9.62e-07;5!UBERON:0003129;9.99e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0002097,4.14e-19,41;UBERON:0003102,1.18e-18,99;UBERON:0002199,2.69e-16,46;UBERON:0002416,2.69e-16,46;UBERON:0002067,5.35e-10,9;UBERON:0004016,5.35e-10,9;UBERON:0010083,5.35e-10,9;UBERON:0000075,4.57e-08,16;UBERON:0001758,7.82e-08,6;UBERON:0003672,7.82e-08,6;UBERON:0011137,1.75e-07,14;UBERON:0002384,3.60e-07,371;UBERON:0000412,7.41e-07,3;UBERON:0001992,7.41e-07,3;UBERON:0002073,8.62e-07,5;UBERON:0005086,8.62e-07,5|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,3.00219895059391,0,0.872338524100369,0,0,0.783556884599516,0.491467873003018,0,0.436882744260345,0.263766978228454,1.8564952944007,0.994192127183747,0,0,0,0.487932798790507,0.738726348460727,0.816002764977012,0,0.572471974262113,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.383587685530591,0.722878304769133,1.00267582127178,0.434539556882471,1.5905718941022,0.486634870302636,0.0945348171640679,0.221729397462564,0,0,0,0,0,0,0.132957960518865,0.238490624305342,0.571994910780128,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0.12663051166458,0.662045904066094,1.72101972449288,0.709336764396714,0,0,0,1.24484414159907,0,0.163461903113459,0.454072282934794,0.576175924479999,3.51482147750695,1.87296046098192,0.570471821544449,0.896692083310806,2.11382097558777,1.29498355494505,2.80901613404497,2.65400422631361,1.96534907698829,1.75653827998801,0,0.989067717114227,0,4.31170885089743,1.17835279767846,2.37725187756732,2.49357703935765,2.63386572528503,0.919463387397059,1.20190447125277,0.113432183160021,1.61450672119976,0.640672166455702,2.11931901159562,2.70081986475962,2.37020817248409,2.83404594050192,1.30281799432113,2.86919764810153,1.36411807225678,2.52433774244115,2.30124746605748,3.87950536365149,2.4850671476163,1.0075209822764,1.52604533079439,0,0,0,0.121973706129595,0,0,0,0.252320850875628,0,1.56449532329816,2.57296375277154,4.14404764057442,0,2.16563844500876,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,4.41026134156626,0,0,0,0,0,0.171567810298526,0,0,0,0.0925884451585296,2.28065813717227,2.07986957055916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0.126995788584338,0,1.17217447210047,0,0,0.300343057843917,0,0.897048674762886,0,0.07333828582095,0.387815147273333,10.7296933755565,0,1.32969058292435,3.12022310734098,0.771622122786426,1.41849132023278,1.0656887160644,1.00084595560703,6.51145926469732,1.64648067356154,0.325736184293735,1.06617584622764,0,0.602878754119172,0,0.599837947092342,0,0,0,0.718874566474748,0,1.42636905040718,0.579125226670317,1.43833425785268,0.358121926479791,0,0,0,0,0.254094624222463,0,0,0.167516265334349,0.6379387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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=23129 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9107 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-20bp_to_ENST00000506979_5end | |||
|coexpression_cluster_id=C2718 | |||
|description=CAGE_peak_11_at_PLXND1_5end | |||
|id=chr3:129279919..129279942,- | |||
|ontology_enrichment_celltype=CL:0000055!1.14e-31!180;CL:0000057!6.59e-20!75;CL:0002620!7.11e-15!23;CL:0000183!6.56e-10!59;CL:0000680!1.06e-09!57;CL:0000056!1.06e-09!57;CL:0000355!1.06e-09!57;CL:0000187!1.02e-08!54;CL:0000393!1.03e-07!60;CL:0000211!1.03e-07!60 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.10e-25;23!CL:0000057;3.27e-09;73!CL:0002556;6.28e-08;6!CL:0002559;9.62e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.61e-26,23;CL:0000057,1.94e-21,76;CL:0002556,7.82e-08,6;CL:0000346,7.41e-07,3;CL:1000428,7.41e-07,3;CL:0002320,8.12e-07,361;CL:0002559,8.62e-07,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.15e-16!83;UBERON:0002329!2.15e-16!83;UBERON:0003077!2.15e-16!83;UBERON:0003059!2.15e-16!83;UBERON:0007282!2.15e-16!83;UBERON:0009618!2.15e-16!83;UBERON:0007285!2.15e-16!83;UBERON:0004290!6.67e-13!70;UBERON:0005256!5.22e-12!143;UBERON:0000475!2.59e-11!365;UBERON:0000486!9.94e-11!82;UBERON:0002097!3.27e-10!40;UBERON:0003102!4.08e-10!95;UBERON:0002199!6.59e-10!45;UBERON:0002416!6.59e-10!45;UBERON:0002385!5.33e-09!63;UBERON:0001015!5.33e-09!63;UBERON:0000383!5.33e-09!63;UBERON:0001134!1.27e-08!61;UBERON:0002036!1.27e-08!61;UBERON:0003082!1.27e-08!61;UBERON:0002100!2.85e-08!216;UBERON:0002067!2.73e-07!9;UBERON:0004016!2.73e-07!9;UBERON:0010083!2.73e-07!9 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.34e-14;41!UBERON:0003102;1.62e-10;50!UBERON:0002199;2.03e-10;46!UBERON:0002416;2.03e-10;46!UBERON:0002067;8.69e-10;9!UBERON:0001434;1.07e-08;36!UBERON:0000075;5.88e-08;16!UBERON:0001758;6.28e-08;6!UBERON:0003672;6.28e-08;6!UBERON:0002384;3.84e-07;198!UBERON:0002073;9.62e-07;5!UBERON:0003129;9.99e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,4.14e-19,41;UBERON:0003102,1.18e-18,99;UBERON:0002199,2.69e-16,46;UBERON:0002416,2.69e-16,46;UBERON:0002067,5.35e-10,9;UBERON:0004016,5.35e-10,9;UBERON:0010083,5.35e-10,9;UBERON:0000075,4.57e-08,16;UBERON:0001758,7.82e-08,6;UBERON:0003672,7.82e-08,6;UBERON:0011137,1.75e-07,14;UBERON:0002384,3.60e-07,371;UBERON:0000412,7.41e-07,3;UBERON:0001992,7.41e-07,3;UBERON:0002073,8.62e-07,5;UBERON:0005086,8.62e-07,5 | |||
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| |||
|short_description=p11@PLXND1 | |||
}} |
Revision as of 21:29, 12 September 2013
Short description: | p11@PLXND1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_PLXND1_5end |
Coexpression cluster: | C2718_Mesenchymal_glioblastoma_Cardiac_Pericytes_Trabecular_Olfactory_Hair |
Association with transcript: | -20bp_to_ENST00000506979_5end |
EntrezGene: | PLXND1 |
HGNC: | 9107 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.61e-26 | 23 |
fibroblast | 1.94e-21 | 76 |
fibroblast of periodontium | 7.82e-08 | 6 |
hair follicle dermal papilla cell | 7.41e-07 | 3 |
stem cell of epidermis | 7.41e-07 | 3 |
connective tissue cell | 8.12e-07 | 361 |
hair follicle cell | 8.62e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
skin of body | 4.14e-19 | 41 |
surface structure | 1.18e-18 | 99 |
integument | 2.69e-16 | 46 |
integumental system | 2.69e-16 | 46 |
dermis | 5.35e-10 | 9 |
dermatome | 5.35e-10 | 9 |
future dermis | 5.35e-10 | 9 |
subdivision of skeletal system | 4.57e-08 | 16 |
periodontium | 7.82e-08 | 6 |
dentition | 7.82e-08 | 6 |
axial skeletal system | 1.75e-07 | 14 |
connective tissue | 3.60e-07 | 371 |
dermal papilla | 7.41e-07 | 3 |
papillary layer of dermis | 7.41e-07 | 3 |
hair follicle | 8.62e-07 | 5 |
hair follicle placode | 8.62e-07 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.