FFCP PHASE1:Mm9::chr12:110784619..110784703,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17263|HGNC=|MCL_coexpression_id=2766|UniProt=|association_with_transcript=0bp_to_ENSMUST00000143847,uc011ysb.1_5end|description=CAGE_peak_6_at_Meg3_5end|id=chr12:110784619..110784703,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!4.82e-12!71;UBERON:0003075!4.82e-12!71;UBERON:0007284!4.82e-12!71;UBERON:0001049!6.63e-12!52;UBERON:0005068!6.63e-12!52;UBERON:0006241!6.63e-12!52;UBERON:0007135!6.63e-12!52;UBERON:0000955!1.15e-11!50;UBERON:0006238!1.15e-11!50;UBERON:0002616!3.69e-11!49;UBERON:0000033!3.08e-10!63;UBERON:0000468!3.30e-10!333;UBERON:0001017!5.43e-10!73;UBERON:0005743!5.43e-10!73;UBERON:0004121!9.09e-10!102;UBERON:0000924!9.09e-10!102;UBERON:0006601!9.09e-10!102;UBERON:0000073!1.77e-09!75;UBERON:0001016!1.77e-09!75;UBERON:0003080!4.83e-09!40;UBERON:0003056!5.71e-09!49;UBERON:0002780!7.93e-09!39;UBERON:0001890!7.93e-09!39;UBERON:0006240!7.93e-09!39;UBERON:0002020!4.30e-08!34|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.27e-14,54;UBERON:0001049,1.46e-12,52;UBERON:0005068,1.46e-12,52;UBERON:0006241,1.46e-12,52;UBERON:0007135,1.46e-12,52;UBERON:0000955,1.21e-10,47;UBERON:0006238,1.21e-10,47;UBERON:0002346,1.34e-10,64;UBERON:0003075,1.34e-10,64;UBERON:0007284,1.34e-10,64;UBERON:0002616,4.15e-10,46;UBERON:0003080,6.95e-10,40;UBERON:0002780,1.22e-09,39;UBERON:0001890,1.22e-09,39;UBERON:0006240,1.22e-09,39;UBERON:0001017,2.25e-09,73;UBERON:0003056,6.55e-09,49;UBERON:0002020,8.34e-09,34;UBERON:0001016,1.22e-08,75;UBERON:0010371,2.07e-08,73;UBERON:0010314,2.67e-08,92;UBERON:0002021,2.24e-07,10;UBERON:0000411,2.24e-07,10;UBERON:0001950,2.24e-07,10;UBERON:0004121,6.69e-07,95;UBERON:0000924,6.69e-07,95;UBERON:0006601,6.69e-07,95;UBERON:0003528,8.67e-07,29;UBERON:0002791,8.67e-07,29;UBERON:0001893,8.67e-07,29|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0,0,0,0,0,0,0,1.02903774414379,1.71920063963254,5.67239301505187,2.02316460859598,3.1739458756322,1.90149421051854,0,0,0,0,0,0,0.384218305321555,0.829516898467821,1.21505344498522,0.210324961351382,3.71346279724945,4.63823935998388,1.22490799214954,1.43768206527355,1.83843757322004,8.8092704799511,9.06580100404833,7.21950706304344,2.2420668914133,2.47016637726506,4.68822033501084,3.62937898701795,7.31591393041184,9.77908785771585,13.258286346315,9.11178757114259,5.21918448310842,0.37863096666592,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,3.41416919849097,2.08182392119363,4.56698217468212,1.38369298353635,2.26083960828934,8.70156432804216,0,7.16865406429684,0.722996784599558,0,14.235482795372,5.96272099843063,2.90925151881133,0,5.5628351432194,38.3287473468623,0.255457055208591,0,0,0,3.89455662452539,7.77751024791665,1.63350657746724,6.43149984711423,6.64860189058859,6.64921742590592,5.353961681236,3.56437773476107,0.248813941220186,0.252722758433675,0.631325567659422,0.780722657776222,0.459804208866946,1.44049703844279,4.52114453507145,3.26575195926374,1.92170580427275,1.59292931751539,1.81092359517311,0,3.9712276835242,3.34307135911503,5.69908904311695,6.39508673218875,8.70630416305416,6.58502836505419,2.18937693500343,0,0,0,1.44988040774851,2.81431271977315,1.44049649168812,1.89395788468168,0.983821158737019,2.00547246753592,1.86027155800326,0.536546802799238,1.40118410840603,0.987359099480883,0.32833492815819,0.486412857275134,0,0.219550115291051,0,4.6263788684108,1.74937841044784,0,0.264450566663544,2.34617075588757,4.64473343720877,1.15980715189884,2.21851877085677,1.11189021922435,0.380451252225118,0,0.494096864172033,1.00534083520108,0.596869416123452,0.19496408711912,0.898819408654221,0.432276099749388,0.597423819763102,0.189667900953082,0.913988100877831,0,1.22190796707189,0.193952487167626,0.49095073923223,0,0,0,0,0,1.50160595144485,1.57247196090562,3.14806957338795,2.02860121388503,4.58236603529592,2.5462585178142,2.5892652370573,6.16113861745134,3.0201755450689,24.4405951096503,2.97712758134803,2.18426371180192,0,0,0,0,0.568474235311454,1.46668478797823,2.37643120085263,2.34690248288502,1.50755631697634,4.52282917683426,9.56154874503214,0.630540576424764,0.8858587585951,0.797273843287435,0.163863314715738,0,0.578596234326046,0,0,0,0.275936746304732,2.0871576698413,3.5163505977661,0,1.76729649043061,0.631016438832513,1.17131623288992,0.646270193198397,0.477937595905104,0.668396022247182,0.283076530788832,0,1.75353514746787,0.395287777946524,8.67567554338879,0.425820255624806,3.02711526234334,4.56083486190013,0,0,2.91336763385978,1.51161778482376,3.77210159511796,0.295301892880773,1.22974059177571,1.29214146584111,3.99887102425256,4.27796854061666,0.948110273807448,0,2.06271086496374,9.19186935535228,2.88097750450096,4.01011919726539,3.42939256050548,5.85222771019503,3.38900753443934,4.77192159746151,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| ||
|EntrezGene=17263 | |||
|HGNC= | |||
|MCL_coexpression_id=2766 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000143847,uc011ysb.1_5end | |||
|description=CAGE_peak_6_at_Meg3_5end | |||
|id=chr12:110784619..110784703,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!4.82e-12!71;UBERON:0003075!4.82e-12!71;UBERON:0007284!4.82e-12!71;UBERON:0001049!6.63e-12!52;UBERON:0005068!6.63e-12!52;UBERON:0006241!6.63e-12!52;UBERON:0007135!6.63e-12!52;UBERON:0000955!1.15e-11!50;UBERON:0006238!1.15e-11!50;UBERON:0002616!3.69e-11!49;UBERON:0000033!3.08e-10!63;UBERON:0000468!3.30e-10!333;UBERON:0001017!5.43e-10!73;UBERON:0005743!5.43e-10!73;UBERON:0004121!9.09e-10!102;UBERON:0000924!9.09e-10!102;UBERON:0006601!9.09e-10!102;UBERON:0000073!1.77e-09!75;UBERON:0001016!1.77e-09!75;UBERON:0003080!4.83e-09!40;UBERON:0003056!5.71e-09!49;UBERON:0002780!7.93e-09!39;UBERON:0001890!7.93e-09!39;UBERON:0006240!7.93e-09!39;UBERON:0002020!4.30e-08!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.27e-14,54;UBERON:0001049,1.46e-12,52;UBERON:0005068,1.46e-12,52;UBERON:0006241,1.46e-12,52;UBERON:0007135,1.46e-12,52;UBERON:0000955,1.21e-10,47;UBERON:0006238,1.21e-10,47;UBERON:0002346,1.34e-10,64;UBERON:0003075,1.34e-10,64;UBERON:0007284,1.34e-10,64;UBERON:0002616,4.15e-10,46;UBERON:0003080,6.95e-10,40;UBERON:0002780,1.22e-09,39;UBERON:0001890,1.22e-09,39;UBERON:0006240,1.22e-09,39;UBERON:0001017,2.25e-09,73;UBERON:0003056,6.55e-09,49;UBERON:0002020,8.34e-09,34;UBERON:0001016,1.22e-08,75;UBERON:0010371,2.07e-08,73;UBERON:0010314,2.67e-08,92;UBERON:0002021,2.24e-07,10;UBERON:0000411,2.24e-07,10;UBERON:0001950,2.24e-07,10;UBERON:0004121,6.69e-07,95;UBERON:0000924,6.69e-07,95;UBERON:0006601,6.69e-07,95;UBERON:0003528,8.67e-07,29;UBERON:0002791,8.67e-07,29;UBERON:0001893,8.67e-07,29 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10556277196391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0.218025156380447,0,0,0,0,0,0,0,1.02903774414379,1.71920063963254,5.67239301505187,2.02316460859598,3.1739458756322,1.90149421051854,0,0,0,0,0,0,0.384218305321555,0.829516898467821,1.21505344498522,0.210324961351382,3.71346279724945,4.63823935998388,1.22490799214954,1.43768206527355,1.83843757322004,8.8092704799511,9.06580100404833,7.21950706304344,2.2420668914133,2.47016637726506,4.68822033501084,3.62937898701795,7.31591393041184,9.77908785771585,13.258286346315,9.11178757114259,5.21918448310842,0.37863096666592,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0.14084341977668,0,0,0,0,0,0,0.34255163915718,0,3.41416919849097,2.08182392119363,4.56698217468212,1.38369298353635,2.26083960828934,8.70156432804216,0,7.16865406429684,0.722996784599558,0,14.235482795372,5.96272099843063,2.90925151881133,0,5.5628351432194,38.3287473468623,0.255457055208591,0,0,0,3.89455662452539,7.77751024791665,1.63350657746724,6.43149984711423,6.64860189058859,6.64921742590592,5.353961681236,3.56437773476107,0.248813941220186,0.252722758433675,0.631325567659422,0.780722657776222,0.459804208866946,1.44049703844279,4.52114453507145,3.26575195926374,1.92170580427275,1.59292931751539,1.81092359517311,0,3.9712276835242,3.34307135911503,5.69908904311695,6.39508673218875,8.70630416305416,6.58502836505419,2.18937693500343,0,0,0,1.44988040774851,2.81431271977315,1.44049649168812,1.89395788468168,0.983821158737019,2.00547246753592,1.86027155800326,0.536546802799238,1.40118410840603,0.987359099480883,0.32833492815819,0.486412857275134,0,0.219550115291051,0,4.6263788684108,1.74937841044784,0,0.264450566663544,2.34617075588757,4.64473343720877,1.15980715189884,2.21851877085677,1.11189021922435,0.380451252225118,0,0.494096864172033,1.00534083520108,0.596869416123452,0.19496408711912,0.898819408654221,0.432276099749388,0.597423819763102,0.189667900953082,0.913988100877831,0,1.22190796707189,0.193952487167626,0.49095073923223,0,0,0,0,0,1.50160595144485,1.57247196090562,3.14806957338795,2.02860121388503,4.58236603529592,2.5462585178142,2.5892652370573,6.16113861745134,3.0201755450689,24.4405951096503,2.97712758134803,2.18426371180192,0,0,0,0,0.568474235311454,1.46668478797823,2.37643120085263,2.34690248288502,1.50755631697634,4.52282917683426,9.56154874503214,0.630540576424764,0.8858587585951,0.797273843287435,0.163863314715738,0,0.578596234326046,0,0,0,0.275936746304732,2.0871576698413,3.5163505977661,0,1.76729649043061,0.631016438832513,1.17131623288992,0.646270193198397,0.477937595905104,0.668396022247182,0.283076530788832,0,1.75353514746787,0.395287777946524,8.67567554338879,0.425820255624806,3.02711526234334,4.56083486190013,0,0,2.91336763385978,1.51161778482376,3.77210159511796,0.295301892880773,1.22974059177571,1.29214146584111,3.99887102425256,4.27796854061666,0.948110273807448,0,2.06271086496374,9.19186935535228,2.88097750450096,4.01011919726539,3.42939256050548,5.85222771019503,3.38900753443934,4.77192159746151,1.522324745573,0.704015124191131,1.27099242518292,0.220528398054962,0.65954501176592,12.5942252822806,1.80938774784468,0.716234064018819,0.492422699235184,1.1659233465194,4.63563255026274,0,0.412773735926445,0.370389054739423,0,0,0,0,0,0,5.72802370809068,1.42351197111511,2.03319467126849,2.70013352054503,2.71814784818809,2.62035076495413,3.2367443132357,1.81837602595739,0.523511883968059,0,0,0,0.448549638131936,0.165458490457098,0.777804753376191,0.129159823477731,3.54807863530634,3.99014611395563,1.3020438484395,0.838874755405687,0.483168241652012,0.288030006257865,0,0.405450430580328,1.84879722896689,0.77952493786677,0.895133478337407,0.198681354781265,0.480781798079875,0.295379054349154,0.504832249740738,0.15241361331,0.100826185136841,0.194915761479505,0,0,0.906921534460845,0.221985953374065,0,0,0.19318959403219,0.187682475451182,0.36630324853453,0.214368379079066,0,14.6835479080437,6.90487854760765,9.73922372846974,16.3260523226503,4.11049511862385,8.3093328712867,7.42524750254986,7.65546045481175,8.15656336171568,14.497288729051,0.31136204275253,4.78829848081237,4.09760653809922,10.9398022680732,1.46729213839588,1.47074806760011,8.22312892865976,8.65347240403356,5.13470735346904,7.07552192938633,8.36481689637791,5.47016390019621,6.18033949301224,5.57018825922363,5.22662767496081,4.28664322154766,5.33067899346335,6.17309505483856,4.94503080963968,7.35994600671987,6.51451579532289,9.22874192028555,6.67621331852499,9.73820991436601,6.7758753899038,7.78454392603424,6.76833499629258,8.41823076601097,6.3827933507555,8.97827634652382,5.45721083371201,6.30428687203606,5.72923460437565,7.12709469455443,10.6098636039628,4.24677982494508,10.292990771598,17.8342974860088,52.0304263227254,18.0884963678003,11.3615239454007 | |||
|short_description=p6@Meg3 | |||
}} |
Revision as of 22:13, 12 September 2013
Short description: | p6@Meg3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Meg3_5end |
Coexpression cluster: | MCL_coexpression_mm9:2766 |
Association with transcript: | 0bp_to_ENSMUST00000143847, uc011ysb.1_5end |
EntrezGene: | Meg3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 6.27e-14 | 54 |
neural tube | 1.46e-12 | 52 |
neural rod | 1.46e-12 | 52 |
future spinal cord | 1.46e-12 | 52 |
neural keel | 1.46e-12 | 52 |
brain | 1.21e-10 | 47 |
future brain | 1.21e-10 | 47 |
neurectoderm | 1.34e-10 | 64 |
neural plate | 1.34e-10 | 64 |
presumptive neural plate | 1.34e-10 | 64 |
regional part of brain | 4.15e-10 | 46 |
anterior neural tube | 6.95e-10 | 40 |
regional part of forebrain | 1.22e-09 | 39 |
forebrain | 1.22e-09 | 39 |
future forebrain | 1.22e-09 | 39 |
central nervous system | 2.25e-09 | 73 |
pre-chordal neural plate | 6.55e-09 | 49 |
gray matter | 8.34e-09 | 34 |
nervous system | 1.22e-08 | 75 |
ecto-epithelium | 2.07e-08 | 73 |
structure with developmental contribution from neural crest | 2.67e-08 | 92 |
occipital lobe | 2.24e-07 | 10 |
visual cortex | 2.24e-07 | 10 |
neocortex | 2.24e-07 | 10 |
ectoderm-derived structure | 6.69e-07 | 95 |
ectoderm | 6.69e-07 | 95 |
presumptive ectoderm | 6.69e-07 | 95 |
brain grey matter | 8.67e-07 | 29 |
regional part of telencephalon | 8.67e-07 | 29 |
telencephalon | 8.67e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.