FFCP PHASE1:Mm9::chr13:43399522..43399582,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=328232|HGNC=|MCL_coexpression_id=1647|UniProt=Q3UHD2|association_with_transcript=0bp_to_ENSMUST00000055341,NM_001033399,uc007qfx.1,uc007qfy.1_5end|description=CAGE_peak_1_at_Gfod1_5end|id=chr13:43399522..43399582,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!1.67e-07!122;UBERON:0000025!2.17e-07!114;UBERON:0002021!3.28e-07!10;UBERON:0000411!3.28e-07!10;UBERON:0001950!3.28e-07!10;UBERON:0000483!3.56e-07!181;UBERON:0000477!3.94e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.92e-07,122;UBERON:0000025,2.60e-07,114;UBERON:0000483,2.72e-07,174;UBERON:0002021,3.00e-07,10;UBERON:0000411,3.00e-07,10;UBERON:0001950,3.00e-07,10;UBERON:0000073,5.74e-07,54|phase1_expression=2.08193501236232,9.42233600626275,9.55498402718026,10.8887116070459,22.5403078475856,4.19698179779725,0.467225281191051,8.78038599402719,88.8376836777017,153.312264740906,39.8937865965427,50.4160044850526,3.0816131387617,3.2345548895029,0.666219523631325,0.202475267389826,0.699561878128147,4.25873923233621,5.34746291062381,7.21462408056651,6.63337663178344,12.6099508025124,6.26879493933445,1.27993938234725,1.14704640533585,2.29692785646008,3.01533397311352,1.939241094173,1.71021077510736,2.01624103807945,1.33038306393183,0,0.61506478758457,0,0,0.664938581433969,0.612508068787107,22.1821764290561,5.4693474116666,7.85285615960697,28.8233429135197,25.9557284284209,16.0218416500281,2.51793635951155,1.92616169317078,5.32285581268876,0,0.65407546914134,0.659058548203415,0.58328969722285,0.839918529752175,0,9.89917375740644,9.42970784614748,4.03312558970957,1.28629718017973,1.14613375975503,3.6097046459421,5.66486090406874,2.64495489636016,3.1691570175309,0.677689064138264,0,0.899899717281399,0,1.4209602298922,1.49800055259202,0.768436610643109,2.59224030771194,2.29510095163874,2.3135745748652,7.14127461009509,5.52171352379034,1.71487118900936,1.91690942036473,0,4.40463523997555,11.4918604276669,10.9060638611933,2.76961204233407,3.11057988248193,4.68822033501084,17.588528937087,9.56696437053856,13.5990440521361,4.71405736757868,5.97961059356232,2.23679334990361,2.49896437999507,1.13357340160178,15.6526823898906,3.44169550792555,8.83962733820076,2.69851595818909,1.94932925234301,0.896053774194671,2.38755514223978,1.1930122580464,0.519572009205738,3.5333957451034,3.09855523508697,0,2.54805239706646,7.11066703153331,0.865964164044856,1.01343946190039,1.01104889002957,2.16949371466214,0.776813650941515,1.7813056687779,2.77576522825817,2.43572382649713,2.07553947530453,1.95939432718409,3.17489509266403,2.76466500925286,1.23597483867187,4.04878199375753,4.42305275974937,3.07357014900077,8.39197770149496,2.42437626567611,0,27.814175716097,25.5524982312415,2.55457055208591,18.9307896719354,15.5974710058286,15.629637929987,8.53806644607489,14.1825186873774,5.02617408451458,24.509229147111,18.1557974704535,13.5062228963714,11.1946471516753,1.83310854930569,4.35424397135326,0.252722758433675,3.57751155007006,0.390361328888111,0.689706313300419,1.26043490863744,1.20563854268572,1.7009124787832,1.0249097622788,2.06143794031403,3.3631438196072,0.646703978798527,0.567318240503458,1.05570674498369,1.31517439456545,2.22437799380478,3.1342694986995,3.08673204611915,0.796137067273973,12.6398373716382,10.808612098818,13.924011470384,3.72826390563903,1.64168241986767,1.62055855314913,4.02466050494857,2.16440654922144,4.31947916084659,2.09280550275367,3.21928081679543,7.70651259623319,6.7469538464527,5.41752631461014,15.0787985755292,15.9357986293612,10.3188554186794,16.6415959262861,22.7113144449257,3.70456604565424,9.91256348951394,1.58670339998127,0.639864751605702,0.232236671860439,1.28867461322093,0.80673409849337,0.889512175379481,0.380451252225118,4.74529061544512,0.988193728344065,1.25667604400135,0.596869416123452,0.974820435595601,5.39291645192533,3.8904848977445,3.38540164532424,0.758671603812327,2.17072173958485,1.1270773567308,1.62921062276251,0.581857461502877,2.10407459670956,1.89709611372772,0.738050739898011,1.72698600625512,1.35736880313981,1.1858105083486,1.00107063429656,0.786235980452812,1.12431056192427,1.21716072833102,2.894125917029,4.32863948028414,4.60313819921297,3.08056930872567,1.37280706594041,0,0.744281895337007,2.18426371180192,1.01031551178845,3.04975602987251,3.37710464954357,5.72734889516475,1.32643988239339,1.95557971730431,1.86719594352707,3.52035372432753,4.18765643604539,5.71304738126433,6.04914308359176,5.83250033192907,6.86540537911202,9.8861956567642,8.84861899464985,7.9435091658312,9.11289069063523,0,0,2.95058563811422,2.48343071674259,10.7568895291821,10.3146284201139,0.491804836130026,2.7771801992481,0.631016438832513,1.17131623288992,1.50796378412959,1.91175038362042,1.55959071857676,2.54768877709949,0.404810701674894,2.33804686329049,2.37172666767914,11.2462460747632,1.84522110770749,1.42452482933804,2.28041743095006,1.97964147567043,0,0.728341908464944,2.11626489875326,1.1316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| ||
|EntrezGene=328232 | |||
|HGNC= | |||
|MCL_coexpression_id=1647 | |||
|UniProt=Q3UHD2 | |||
|association_with_transcript=0bp_to_ENSMUST00000055341,NM_001033399,uc007qfx.1,uc007qfy.1_5end | |||
|description=CAGE_peak_1_at_Gfod1_5end | |||
|id=chr13:43399522..43399582,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!1.67e-07!122;UBERON:0000025!2.17e-07!114;UBERON:0002021!3.28e-07!10;UBERON:0000411!3.28e-07!10;UBERON:0001950!3.28e-07!10;UBERON:0000483!3.56e-07!181;UBERON:0000477!3.94e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.92e-07,122;UBERON:0000025,2.60e-07,114;UBERON:0000483,2.72e-07,174;UBERON:0002021,3.00e-07,10;UBERON:0000411,3.00e-07,10;UBERON:0001950,3.00e-07,10;UBERON:0000073,5.74e-07,54 | |||
|phase1_expression=2.08193501236232,9.42233600626275,9.55498402718026,10.8887116070459,22.5403078475856,4.19698179779725,0.467225281191051,8.78038599402719,88.8376836777017,153.312264740906,39.8937865965427,50.4160044850526,3.0816131387617,3.2345548895029,0.666219523631325,0.202475267389826,0.699561878128147,4.25873923233621,5.34746291062381,7.21462408056651,6.63337663178344,12.6099508025124,6.26879493933445,1.27993938234725,1.14704640533585,2.29692785646008,3.01533397311352,1.939241094173,1.71021077510736,2.01624103807945,1.33038306393183,0,0.61506478758457,0,0,0.664938581433969,0.612508068787107,22.1821764290561,5.4693474116666,7.85285615960697,28.8233429135197,25.9557284284209,16.0218416500281,2.51793635951155,1.92616169317078,5.32285581268876,0,0.65407546914134,0.659058548203415,0.58328969722285,0.839918529752175,0,9.89917375740644,9.42970784614748,4.03312558970957,1.28629718017973,1.14613375975503,3.6097046459421,5.66486090406874,2.64495489636016,3.1691570175309,0.677689064138264,0,0.899899717281399,0,1.4209602298922,1.49800055259202,0.768436610643109,2.59224030771194,2.29510095163874,2.3135745748652,7.14127461009509,5.52171352379034,1.71487118900936,1.91690942036473,0,4.40463523997555,11.4918604276669,10.9060638611933,2.76961204233407,3.11057988248193,4.68822033501084,17.588528937087,9.56696437053856,13.5990440521361,4.71405736757868,5.97961059356232,2.23679334990361,2.49896437999507,1.13357340160178,15.6526823898906,3.44169550792555,8.83962733820076,2.69851595818909,1.94932925234301,0.896053774194671,2.38755514223978,1.1930122580464,0.519572009205738,3.5333957451034,3.09855523508697,0,2.54805239706646,7.11066703153331,0.865964164044856,1.01343946190039,1.01104889002957,2.16949371466214,0.776813650941515,1.7813056687779,2.77576522825817,2.43572382649713,2.07553947530453,1.95939432718409,3.17489509266403,2.76466500925286,1.23597483867187,4.04878199375753,4.42305275974937,3.07357014900077,8.39197770149496,2.42437626567611,0,27.814175716097,25.5524982312415,2.55457055208591,18.9307896719354,15.5974710058286,15.629637929987,8.53806644607489,14.1825186873774,5.02617408451458,24.509229147111,18.1557974704535,13.5062228963714,11.1946471516753,1.83310854930569,4.35424397135326,0.252722758433675,3.57751155007006,0.390361328888111,0.689706313300419,1.26043490863744,1.20563854268572,1.7009124787832,1.0249097622788,2.06143794031403,3.3631438196072,0.646703978798527,0.567318240503458,1.05570674498369,1.31517439456545,2.22437799380478,3.1342694986995,3.08673204611915,0.796137067273973,12.6398373716382,10.808612098818,13.924011470384,3.72826390563903,1.64168241986767,1.62055855314913,4.02466050494857,2.16440654922144,4.31947916084659,2.09280550275367,3.21928081679543,7.70651259623319,6.7469538464527,5.41752631461014,15.0787985755292,15.9357986293612,10.3188554186794,16.6415959262861,22.7113144449257,3.70456604565424,9.91256348951394,1.58670339998127,0.639864751605702,0.232236671860439,1.28867461322093,0.80673409849337,0.889512175379481,0.380451252225118,4.74529061544512,0.988193728344065,1.25667604400135,0.596869416123452,0.974820435595601,5.39291645192533,3.8904848977445,3.38540164532424,0.758671603812327,2.17072173958485,1.1270773567308,1.62921062276251,0.581857461502877,2.10407459670956,1.89709611372772,0.738050739898011,1.72698600625512,1.35736880313981,1.1858105083486,1.00107063429656,0.786235980452812,1.12431056192427,1.21716072833102,2.894125917029,4.32863948028414,4.60313819921297,3.08056930872567,1.37280706594041,0,0.744281895337007,2.18426371180192,1.01031551178845,3.04975602987251,3.37710464954357,5.72734889516475,1.32643988239339,1.95557971730431,1.86719594352707,3.52035372432753,4.18765643604539,5.71304738126433,6.04914308359176,5.83250033192907,6.86540537911202,9.8861956567642,8.84861899464985,7.9435091658312,9.11289069063523,0,0,2.95058563811422,2.48343071674259,10.7568895291821,10.3146284201139,0.491804836130026,2.7771801992481,0.631016438832513,1.17131623288992,1.50796378412959,1.91175038362042,1.55959071857676,2.54768877709949,0.404810701674894,2.33804686329049,2.37172666767914,11.2462460747632,1.84522110770749,1.42452482933804,2.28041743095006,1.97964147567043,0,0.728341908464944,2.11626489875326,1.13163047853539,0,1.84461088766356,2.06742634534577,2.18120237686503,3.20847640546249,4.42451461110142,0,6.18813259489121,3.40439605753788,0.900305470156551,0.905510786479282,2.14337035031592,1.24138163549592,1.96205699362278,2.13913726782757,2.43571959291679,3.28540391289194,6.14313005505079,2.64634077665954,2.63818004706368,4.19807509409354,4.28221766989907,5.01363844813173,5.58079059133208,1.1659233465194,10.5692422145991,1.53783792718067,2.47664241555867,3.70389054739423,1.69531611304222,1.36694227721025,1.83022538565218,25.4967644990783,22.112329467138,26.5343949704494,0,0.790839983952838,1.21991680276109,1.51207477150522,0.627264888043406,1.74690050996942,1.61837215661785,2.0663363931334,3.14107130380836,1.16653475962614,3.10669656543463,0,0.299033092087958,0.496375471371293,0.777804753376191,1.549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| |||
|short_description=p1@Gfod1 | |||
}} | |||
Revision as of 00:35, 13 September 2013
| Short description: | p1@Gfod1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gfod1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1647 |
| Association with transcript: | 0bp_to_ENSMUST00000055341, NM_001033399, uc007qfx.1, uc007qfy.1_5end |
| EntrezGene: | Gfod1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| anatomical conduit | 1.92e-07 | 122 |
| tube | 2.60e-07 | 114 |
| epithelium | 2.72e-07 | 174 |
| occipital lobe | 3.00e-07 | 10 |
| visual cortex | 3.00e-07 | 10 |
| neocortex | 3.00e-07 | 10 |
| regional part of nervous system | 5.74e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
