FFCP PHASE1:Hg19::chr3:79068138..79068214,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6091|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10249|TSSclassifier=S|UniProt=B2RXI1|association_with_transcript=0bp_to_ENST00000495273_5end|description=CAGE_peak_3_at_ROBO1_5end|id=chr3:79068138..79068214,-|ontology_enrichment_celltype=CL:0000055!1.03e-11!180;CL:0000057!4.48e-09!75;CL:0002620!5.12e-07!23|ontology_enrichment_celltype_v019=CL:0002620;3.30e-07;23|ontology_enrichment_celltype_v019_2=CL:0000057,2.78e-09,76;CL:0002620,3.32e-07,23|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!5.66e-20!365;UBERON:0000481!2.96e-15!347;UBERON:0000119!7.06e-12!312;UBERON:0000483!2.44e-11!309;UBERON:0000468!3.33e-11!659;UBERON:0004121!1.40e-09!169;UBERON:0000922!1.71e-09!612;UBERON:0000924!2.50e-09!173;UBERON:0006601!2.50e-09!173;UBERON:0003102!2.90e-09!95;UBERON:0002097!1.15e-08!40;UBERON:0002199!1.37e-08!45;UBERON:0002416!1.37e-08!45;UBERON:0003104!4.29e-08!238;UBERON:0009142!4.29e-08!238;UBERON:0005256!5.76e-08!143;UBERON:0002050!6.32e-08!605;UBERON:0005423!6.32e-08!605;UBERON:0000467!8.48e-08!625;UBERON:0000923!1.26e-07!604;UBERON:0005291!1.26e-07!604;UBERON:0006598!1.26e-07!604;UBERON:0002532!1.26e-07!604;UBERON:0000480!1.39e-07!626;UBERON:0002100!1.54e-07!216;UBERON:0000914!3.48e-07!83;UBERON:0002329!3.48e-07!83;UBERON:0003077!3.48e-07!83;UBERON:0003059!3.48e-07!83;UBERON:0007282!3.48e-07!83;UBERON:0009618!3.48e-07!83;UBERON:0007285!3.48e-07!83;UBERON:0000477!3.84e-07!286;UBERON:0000064!7.95e-07!219;UBERON:0000033!8.59e-07!123|ontology_enrichment_uberon_v019=UBERON:0000922;6.43e-08;49|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.45e-09,309;UBERON:0000483,7.44e-09,306;UBERON:0003102,1.11e-08,99;UBERON:0002097,2.23e-08,41;UBERON:0002199,2.42e-08,46;UBERON:0002416,2.42e-08,46;UBERON:0011216,2.54e-08,223;UBERON:0004121,3.65e-08,171;UBERON:0000924,3.65e-08,171;UBERON:0006601,3.65e-08,171;UBERON:0000922,7.31e-08,592;UBERON:0003104,2.31e-07,160;UBERON:0009142,2.31e-07,160|phase1_expression=3.08853244759946,2.78330681058278,1.55049844505568,2.00146596706261,2.23480547213644,0.872338524100369,2.53299878168311,3.15859936713415,2.35067065379855,0.245733936501509,0.697801167972428,3.9319446983431,2.11013582582763,2.35156070624089,4.30816588446291,3.36162573225888,3.61616716814386,2.92124036154949,1.95173119516203,1.10808952269109,1.02000345622126,0.626909442956176,1.43117993565528,1.64249310087461,2.88748071068046,0.916960868975415,0.492603536699674,0.0787107813136792,0,0,0,0,3.0120591877825,2.9580320813343,0,0,0,0,0,0,0,0,1.03030227053675,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0.150575119077773,0.127986611154418,0,0.473554504088034,0,0.201606743224732,0,0,2.43806866313962,4.69490601792545,2.68511379871414,2.1686349143074,2.00535164254356,1.15877215168659,0,0.973269740605272,2.6469748805939,3.76939975686359,2.63504357079378,1.76821751921912,1.45718115317017,0.741568885568859,0,0.174129737299267,0.132957960518865,0,0,0,0.993812036833525,1.72046919021225,0.347140501607594,2.82653970962005,0.838998872419812,0.825354125820202,0.208994966536811,0,0,0,0,0,0,0.367663080345869,0.81014194788176,2.58969212023831,2.02076435363553,3.49095589498299,3.06633274931766,3.79706263827252,1.28241220751285,0,0,0.872188104285069,3.47880366186723,2.27934920996244,3.70745706277013,10.3261183469573,1.77334191099179,1.12135520028461,2.1349799145941,2.4666754841716,5.60179863719579,3.63718814588158,5.23078089963068,3.32986340818849,5.76175924479999,3.04617861383936,2.18512053781224,3.99330275081114,3.58676833324323,3.99277295388801,4.69431538667581,4.21352420106745,5.30800845262722,2.57952066354713,6.50952421407322,8.31602000097437,5.43987244412825,3.64064544775211,0,2.69337782326506,3.75355559615892,3.3247693858102,1.31693286264251,1.5324389789951,4.6573798261045,1.24775401476023,7.17558542755448,3.63047560991565,3.17897851739343,9.60291507470087,2.47326070172253,7.47157566132325,3.16398655763703,3.71307930930786,1.46155507741798,8.58274832429989,3.22174645248048,4.20279747728911,7.10019185033229,1.61203357164224,1.69560592310488,4.44499962275583,2.72746120590835,4.01526433544605,4.51302712679503,5.69878003782387,4.99633954338929,4.97573064073778,4.28945446488568,5.10968302706162,1.56449532329816,1.28648187638577,4.14404764057442,2.78620756819187,0,1.77460200059766,2.52877035117153,2.89213235860178,1.98529150918309,1.96091499683166,1.66089433377768,2.42696354688296,1.56977172100277,1.15424147083917,2.95262181849859,4.20725321410337,2.057870056657,2.94017422771084,0,0,0.590789906681404,0,1.47586126251736,1.88724591328378,4.2802611309364,1.1240175325762,1.91005047582099,3.24059558054854,0.651616610620649,2.07986957055916,4.3299402607582,2.08674728955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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6091 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10249 | |||
|TSSclassifier=S | |||
|UniProt=B2RXI1 | |||
|association_with_transcript=0bp_to_ENST00000495273_5end | |||
|description=CAGE_peak_3_at_ROBO1_5end | |||
|id=chr3:79068138..79068214,- | |||
|ontology_enrichment_celltype=CL:0000055!1.03e-11!180;CL:0000057!4.48e-09!75;CL:0002620!5.12e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0002620;3.30e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,2.78e-09,76;CL:0002620,3.32e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.66e-20!365;UBERON:0000481!2.96e-15!347;UBERON:0000119!7.06e-12!312;UBERON:0000483!2.44e-11!309;UBERON:0000468!3.33e-11!659;UBERON:0004121!1.40e-09!169;UBERON:0000922!1.71e-09!612;UBERON:0000924!2.50e-09!173;UBERON:0006601!2.50e-09!173;UBERON:0003102!2.90e-09!95;UBERON:0002097!1.15e-08!40;UBERON:0002199!1.37e-08!45;UBERON:0002416!1.37e-08!45;UBERON:0003104!4.29e-08!238;UBERON:0009142!4.29e-08!238;UBERON:0005256!5.76e-08!143;UBERON:0002050!6.32e-08!605;UBERON:0005423!6.32e-08!605;UBERON:0000467!8.48e-08!625;UBERON:0000923!1.26e-07!604;UBERON:0005291!1.26e-07!604;UBERON:0006598!1.26e-07!604;UBERON:0002532!1.26e-07!604;UBERON:0000480!1.39e-07!626;UBERON:0002100!1.54e-07!216;UBERON:0000914!3.48e-07!83;UBERON:0002329!3.48e-07!83;UBERON:0003077!3.48e-07!83;UBERON:0003059!3.48e-07!83;UBERON:0007282!3.48e-07!83;UBERON:0009618!3.48e-07!83;UBERON:0007285!3.48e-07!83;UBERON:0000477!3.84e-07!286;UBERON:0000064!7.95e-07!219;UBERON:0000033!8.59e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;6.43e-08;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.45e-09,309;UBERON:0000483,7.44e-09,306;UBERON:0003102,1.11e-08,99;UBERON:0002097,2.23e-08,41;UBERON:0002199,2.42e-08,46;UBERON:0002416,2.42e-08,46;UBERON:0011216,2.54e-08,223;UBERON:0004121,3.65e-08,171;UBERON:0000924,3.65e-08,171;UBERON:0006601,3.65e-08,171;UBERON:0000922,7.31e-08,592;UBERON:0003104,2.31e-07,160;UBERON:0009142,2.31e-07,160 | |||
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| |||
|short_description=p3@ROBO1 | |||
}} |
Revision as of 01:26, 13 September 2013
Short description: | p3@ROBO1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_ROBO1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000495273_5end |
EntrezGene: | ROBO1 |
HGNC: | 10249 |
UniProt: | B2RXI1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 2.78e-09 | 76 |
skin fibroblast | 3.32e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.45e-09 | 309 |
epithelium | 7.44e-09 | 306 |
surface structure | 1.11e-08 | 99 |
skin of body | 2.23e-08 | 41 |
integument | 2.42e-08 | 46 |
integumental system | 2.42e-08 | 46 |
organ system subdivision | 2.54e-08 | 223 |
ectoderm-derived structure | 3.65e-08 | 171 |
ectoderm | 3.65e-08 | 171 |
presumptive ectoderm | 3.65e-08 | 171 |
embryo | 7.31e-08 | 592 |
mesenchyme | 2.31e-07 | 160 |
entire embryonic mesenchyme | 2.31e-07 | 160 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.