FFCP PHASE1:Mm9::chr19:6058210..6058230,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14109|HGNC=|MCL_coexpression_id=12|UniProt=P35545,Q642K5|association_with_transcript=243bp_to_NM_001190436,uc008ggu.2_5end|description=CAGE_peak_4_at_Fau_5end|id=chr19:6058210..6058230,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002563,1.13e-07,9;CL:0002251,1.13e-07,9;CL:0000066,6.14e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.30e-10!15;UBERON:0000160!5.31e-10!43;UBERON:0005409!1.22e-09!59;UBERON:0001242!2.35e-09!13;UBERON:0000060!2.35e-09!13;UBERON:0001262!2.35e-09!13;UBERON:0004786!2.35e-09!13|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.32e-19,31;UBERON:0005409,1.94e-16,47;UBERON:0000344,2.35e-12,15;UBERON:0001242,7.41e-11,13;UBERON:0001262,7.41e-11,13;UBERON:0004786,7.41e-11,13;UBERON:0004119,2.75e-09,118;UBERON:0000925,2.75e-09,118;UBERON:0006595,2.75e-09,118;UBERON:0001007,3.25e-09,116;UBERON:0001555,3.25e-09,116;UBERON:0007026,3.25e-09,116;UBERON:0004921,2.70e-08,114;UBERON:0003350,1.13e-07,9;UBERON:0004808,1.13e-07,9;UBERON:0001277,1.13e-07,9;UBERON:0004923,5.84e-07,24|phase1_expression=0.160148847104794,212.87499866001,185.639689670931,223.521052155747,223.900391286017,48.5171095825362,55.5998084617351,0,10.559154161375,8.66038747391376,17.293014790776,14.8376215731326,0,0,0.666219523631325,1.01237633694913,0,0.473193248037357,0,0.84877930359606,1.61582251287033,0.794327609607082,1.82839852397255,154.392687995637,123.651602495205,242.900120820654,261.903293664717,164.620021772019,319.049321267252,264.127575988407,104.213340007993,2.54012269383853,1.23012957516914,31.6963362030877,17.6199488048278,30.0884708098871,13.4751775133164,0,0.7813353445238,0,0,0,0,0.251793635951155,0.912392380975631,0.734187008646726,4.69434806608824,0.872100625521786,0.878744730937887,1.1665793944457,0.699932108126813,1.43752564364972,0.167782606057736,0,1.00828139742739,0.514518872071894,0.573066879877513,0,0.202316460859598,0,0,1.0165335962074,1.77858959222228,0.449949858640699,1.97773272513395,1.4209602298922,0.898800331555214,1.53687322128622,0.103689612308478,0,0,0.571301968807607,0.220868540951614,0.489963196859816,0.0958454710182364,0.919218786610021,0,1.14918604276669,0.768032666281217,1.05509030184155,0.823388792421687,0,1.3959149950069,0.56276261003168,1.22238598221448,0.294628585473668,0.142371680799103,0.559198337475902,4.16494063332512,1.88928900266964,0.579728977403356,6.88339101585109,16.9992833426938,10.2543606411185,7.14754059192436,13.8888335000174,17.9768857768642,0.852151612890289,0.519572009205738,1.06001872353102,0,0,0,0,1.94841936910093,1.52015919285059,1.01104889002957,43.0473226540856,0,0.29688427812965,1.38788261412909,2.13125834818499,0.691846491768175,1.50722640552623,0.823120949949934,0.753999547978053,7.41584903203122,2.16899035379867,0.884610551949874,0.485300549842228,0.662524555381181,0,61.5092812019803,0,0.209446706813455,113.678389567823,1.1981512450592,1.79970819298022,1.39777249780371,0.748953197024114,0,0.251308704225729,0.521472960576829,0,1.0389402227978,0.648965052271031,0.305518091550949,0.746441823660558,1.51633655060205,0.841767423545896,0.780722657776222,0.229902104433473,0.900310649026746,1.05493372485001,0.408218994907967,0.512454881139399,0.281105173679186,0.776110112217047,1.07783996466421,0.378212160335639,0.351902248327898,0.219195732427575,0.556094498451196,0,0.61734640922383,0.199034266818493,6.31991868581911,2.57347907114715,1.13665399758237,0.207125772535502,0.469052119962192,0.180062061461015,0,0,0.308534225774757,0.232533944750408,0.268273401399619,0.116765342367169,0,0.164167464079095,0,0,0.658650345873152,0.134206418760372,0.210289948564127,0.308713837137853,281.516803102196,184.850946097817,0.213288250535234,0.232236671860439,4.38149368495117,21.781820659321,30.2434139629024,28.5338439168839,111.988858524505,39.3630501790386,16.0854533632172,12.3353012665514,8.96834800747953,78.1972885529173,121.253445979703,138.801467458294,2.46568271239006,1.37098215131675,2.25415471346161,1.22190796707189,1.74557238450863,2.10407459670956,1.70738650235495,1.03327103585722,3.45397201251025,5.42947521255922,4.15033677922008,0.83422552858047,0.786235980452812,1.12431056192427,1.42002084971952,0.964708639009667,2.03700681425136,1.43848068725405,2.59416362840057,8.23684239564244,2.87536413054709,2.97712758134803,5.61667811606209,7.07220858251913,5.74071723270119,8.20153986317724,0,0.947457058852424,0.488894929326078,0,0.704070744865506,0.502518772325447,0.238043640886014,0.195133647857799,0.315270288212382,0,0.318909537314974,0.327726629431476,0.172684981865896,0,1.50791283939272,0.54390568381871,0.983528546038072,0.827810238914197,1.12385412991454,0.468846746368813,1.47541450839008,0,0.315508219416257,0,0.430846795465598,0.716906393857656,0.891194696329576,0.283076530788832,0,0.584511715822624,0.395287777946524,0.321321316421807,0.567760340833074,0.35613120733451,0.162886959353576,0.494910368917606,0,0.971122544619926,1.51161778482376,0.377210159511796,0,0.307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| ||
|EntrezGene=14109 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=P35545,Q642K5 | |||
|association_with_transcript=243bp_to_NM_001190436,uc008ggu.2_5end | |||
|description=CAGE_peak_4_at_Fau_5end | |||
|id=chr19:6058210..6058230,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.13e-07,9;CL:0002251,1.13e-07,9;CL:0000066,6.14e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.30e-10!15;UBERON:0000160!5.31e-10!43;UBERON:0005409!1.22e-09!59;UBERON:0001242!2.35e-09!13;UBERON:0000060!2.35e-09!13;UBERON:0001262!2.35e-09!13;UBERON:0004786!2.35e-09!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,5.32e-19,31;UBERON:0005409,1.94e-16,47;UBERON:0000344,2.35e-12,15;UBERON:0001242,7.41e-11,13;UBERON:0001262,7.41e-11,13;UBERON:0004786,7.41e-11,13;UBERON:0004119,2.75e-09,118;UBERON:0000925,2.75e-09,118;UBERON:0006595,2.75e-09,118;UBERON:0001007,3.25e-09,116;UBERON:0001555,3.25e-09,116;UBERON:0007026,3.25e-09,116;UBERON:0004921,2.70e-08,114;UBERON:0003350,1.13e-07,9;UBERON:0004808,1.13e-07,9;UBERON:0001277,1.13e-07,9;UBERON:0004923,5.84e-07,24 | |||
|phase1_expression=0.160148847104794,212.87499866001,185.639689670931,223.521052155747,223.900391286017,48.5171095825362,55.5998084617351,0,10.559154161375,8.66038747391376,17.293014790776,14.8376215731326,0,0,0.666219523631325,1.01237633694913,0,0.473193248037357,0,0.84877930359606,1.61582251287033,0.794327609607082,1.82839852397255,154.392687995637,123.651602495205,242.900120820654,261.903293664717,164.620021772019,319.049321267252,264.127575988407,104.213340007993,2.54012269383853,1.23012957516914,31.6963362030877,17.6199488048278,30.0884708098871,13.4751775133164,0,0.7813353445238,0,0,0,0,0.251793635951155,0.912392380975631,0.734187008646726,4.69434806608824,0.872100625521786,0.878744730937887,1.1665793944457,0.699932108126813,1.43752564364972,0.167782606057736,0,1.00828139742739,0.514518872071894,0.573066879877513,0,0.202316460859598,0,0,1.0165335962074,1.77858959222228,0.449949858640699,1.97773272513395,1.4209602298922,0.898800331555214,1.53687322128622,0.103689612308478,0,0,0.571301968807607,0.220868540951614,0.489963196859816,0.0958454710182364,0.919218786610021,0,1.14918604276669,0.768032666281217,1.05509030184155,0.823388792421687,0,1.3959149950069,0.56276261003168,1.22238598221448,0.294628585473668,0.142371680799103,0.559198337475902,4.16494063332512,1.88928900266964,0.579728977403356,6.88339101585109,16.9992833426938,10.2543606411185,7.14754059192436,13.8888335000174,17.9768857768642,0.852151612890289,0.519572009205738,1.06001872353102,0,0,0,0,1.94841936910093,1.52015919285059,1.01104889002957,43.0473226540856,0,0.29688427812965,1.38788261412909,2.13125834818499,0.691846491768175,1.50722640552623,0.823120949949934,0.753999547978053,7.41584903203122,2.16899035379867,0.884610551949874,0.485300549842228,0.662524555381181,0,61.5092812019803,0,0.209446706813455,113.678389567823,1.1981512450592,1.79970819298022,1.39777249780371,0.748953197024114,0,0.251308704225729,0.521472960576829,0,1.0389402227978,0.648965052271031,0.305518091550949,0.746441823660558,1.51633655060205,0.841767423545896,0.780722657776222,0.229902104433473,0.900310649026746,1.05493372485001,0.408218994907967,0.512454881139399,0.281105173679186,0.776110112217047,1.07783996466421,0.378212160335639,0.351902248327898,0.219195732427575,0.556094498451196,0,0.61734640922383,0.199034266818493,6.31991868581911,2.57347907114715,1.13665399758237,0.207125772535502,0.469052119962192,0.180062061461015,0,0,0.308534225774757,0.232533944750408,0.268273401399619,0.116765342367169,0,0.164167464079095,0,0,0.658650345873152,0.134206418760372,0.210289948564127,0.308713837137853,281.516803102196,184.850946097817,0.213288250535234,0.232236671860439,4.38149368495117,21.781820659321,30.2434139629024,28.5338439168839,111.988858524505,39.3630501790386,16.0854533632172,12.3353012665514,8.96834800747953,78.1972885529173,121.253445979703,138.801467458294,2.46568271239006,1.37098215131675,2.25415471346161,1.22190796707189,1.74557238450863,2.10407459670956,1.70738650235495,1.03327103585722,3.45397201251025,5.42947521255922,4.15033677922008,0.83422552858047,0.786235980452812,1.12431056192427,1.42002084971952,0.964708639009667,2.03700681425136,1.43848068725405,2.59416362840057,8.23684239564244,2.87536413054709,2.97712758134803,5.61667811606209,7.07220858251913,5.74071723270119,8.20153986317724,0,0.947457058852424,0.488894929326078,0,0.704070744865506,0.502518772325447,0.238043640886014,0.195133647857799,0.315270288212382,0,0.318909537314974,0.327726629431476,0.172684981865896,0,1.50791283939272,0.54390568381871,0.983528546038072,0.827810238914197,1.12385412991454,0.468846746368813,1.47541450839008,0,0.315508219416257,0,0.430846795465598,0.716906393857656,0.891194696329576,0.283076530788832,0,0.584511715822624,0.395287777946524,0.321321316421807,0.567760340833074,0.35613120733451,0.162886959353576,0.494910368917606,0,0.971122544619926,1.51161778482376,0.377210159511796,0,0.307435147943927,8.01127708821486,0.363533729477506,0.356497378384721,0.948110273807448,1.05418608574999,0,1.70219802876894,0.540183282093931,0.905510786479282,0.643011105094777,1.24138163549592,1.60531935841864,1.64549020602121,0.304464949114599,0.938686832254841,6.14313005505079,1.32317038832977,0.8244312647074,0.645857706783622,1.08563264870681,0.716234064018819,0.492422699235184,53.0495122666328,0.741701208042039,0.170870880797853,0.619160603889667,0.185194527369712,0.188368457004691,0.546776910884101,0.228778173206523,1.01987057996313,1.25956307091292,1.24379976423981,26.7307773044232,1.10717597753397,0.406638934253697,3.56417624711944,2.29997125615916,6.11415178489297,4.18079473792944,3.38879168473877,8.11443420150492,91.6377861172976,0,0.56369293868419,0.149516546043979,0.165458490457098,0.388902376688095,0.129159823477731,1.01373675294467,0.352071715937262,0.651021924219751,0.524296722128554,0.724752362478018,0,0,0.810900861160657,0.924398614483445,0.77952493786677,0.179026695667481,0.198681354781265,0.480781798079875,0.295379054349154,0.504832249740738,0.381034033274999,0,0.292373642219257,0.1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| |||
|short_description=p4@Fau | |||
}} | |||
Revision as of 18:18, 13 September 2013
| Short description: | p4@Fau |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Fau_5end |
| Coexpression cluster: | MCL_coexpression_mm9:12 |
| Association with transcript: | 243bp_to_NM_001190436, uc008ggu.2_5end |
| EntrezGene: | Fau |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 1.13e-07 | 9 |
| epithelial cell of alimentary canal | 1.13e-07 | 9 |
| epithelial cell | 6.14e-07 | 25 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 5.32e-19 | 31 |
| gastrointestinal system | 1.94e-16 | 47 |
| mucosa | 2.35e-12 | 15 |
| intestinal mucosa | 7.41e-11 | 13 |
| wall of intestine | 7.41e-11 | 13 |
| gastrointestinal system mucosa | 7.41e-11 | 13 |
| endoderm-derived structure | 2.75e-09 | 118 |
| endoderm | 2.75e-09 | 118 |
| presumptive endoderm | 2.75e-09 | 118 |
| digestive system | 3.25e-09 | 116 |
| digestive tract | 3.25e-09 | 116 |
| primitive gut | 3.25e-09 | 116 |
| subdivision of digestive tract | 2.70e-08 | 114 |
| epithelium of mucosa | 1.13e-07 | 9 |
| gastrointestinal system epithelium | 1.13e-07 | 9 |
| intestinal epithelium | 1.13e-07 | 9 |
| organ component layer | 5.84e-07 | 24 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
