FFCP PHASE1:Mm9::chr19:7369567..7369600,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13728|HGNC=|MCL_coexpression_id=12|UniProt=Q05512,Q3T9A3|association_with_transcript=326bp_to_NM_001080390,uc008gkq.1_5end|description=CAGE_peak_4_at_Mark2_5end|id=chr19:7369567..7369600,-|ontology_enrichment_celltype=CL:0002563!8.71e-08!9;CL:0002251!8.71e-08!9|ontology_enrichment_celltype_v019_2=CL:0002563,5.08e-11,9;CL:0002251,5.08e-11,9;CL:0000239,1.30e-08,6;CL:0000677,1.30e-08,6;CL:0000584,1.30e-08,6;CL:0000075,3.41e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!1.22e-13!59;UBERON:0000160!4.55e-13!43;UBERON:0000344!1.30e-12!15;UBERON:0001242!4.27e-11!13;UBERON:0000060!4.27e-11!13;UBERON:0001262!4.27e-11!13;UBERON:0004786!4.27e-11!13;UBERON:0004119!4.13e-09!130;UBERON:0000925!4.13e-09!130;UBERON:0006595!4.13e-09!130;UBERON:0004923!4.99e-09!24;UBERON:0001007!1.44e-08!128;UBERON:0001555!1.44e-08!128;UBERON:0007026!1.44e-08!128;UBERON:0003350!8.71e-08!9;UBERON:0004808!8.71e-08!9;UBERON:0001277!8.71e-08!9;UBERON:0004921!1.08e-07!126;UBERON:0004185!1.08e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.24e-31,31;UBERON:0005409,1.49e-30,47;UBERON:0000344,2.41e-18,15;UBERON:0001242,4.85e-16,13;UBERON:0001262,4.85e-16,13;UBERON:0004786,4.85e-16,13;UBERON:0001007,5.91e-12,116;UBERON:0001555,5.91e-12,116;UBERON:0007026,5.91e-12,116;UBERON:0004119,1.60e-11,118;UBERON:0000925,1.60e-11,118;UBERON:0006595,1.60e-11,118;UBERON:0004923,3.80e-11,24;UBERON:0003350,5.08e-11,9;UBERON:0004808,5.08e-11,9;UBERON:0001277,5.08e-11,9;UBERON:0004921,1.26e-10,114;UBERON:0000485,1.41e-08,11|phase1_expression=0,68.7481553049541,76.8948714568316,56.2583433030704,53.5958431042592,11.9194283057442,15.4184342793047,0.129123323441576,0,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0,0,0,2.04103896362567,0,0,39.1981435843846,33.723164316874,55.1262685550419,34.8917216888851,35.3372821604858,62.8977518400598,63.0075324399827,33.481307108951,0,0,0,5.77703239502549,3.98963148860382,3.87921776898501,0,0,0,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3599426674155,0,0.649776417447669,0,4.21333260395256,0,0,0,0,0,0,0,0.216491041011214,0,0,12.4460428893775,0,0,0.346970653532272,0,0.461230994512117,0,0,0.125666591329675,13.5957232253906,0,0,0,0,0,44.7340226923493,0,0.209446706813455,71.7834325136142,0,0,0,0,0,0.125654352112864,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0.30140963567143,0,0,0,0.258703370739016,0,0,0,0,0.278047249225598,1.74126083261083,2.05782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,121.924530921021,60.2947291992881,0,0,1.9330119198314,7.05892336181699,7.78323153457046,11.7939888189787,49.8255514621737,23.7166494802576,16.8394589896181,22.0841683965677,18.3266241891973,68.3102750577208,47.334232922558,66.3140439937043,0,0.228497025219458,1.1270773567308,1.01825663922657,1.35766741017338,2.45475369616115,5.37510565556187,11.9564219863478,16.0138702398202,16.6586171294431,0,0.166845105716094,0.393117990226406,0.674586337154561,1.01430060694251,2.17059443777175,0.763877555344259,0.863088412352432,0.162135226775035,1.37280706594041,0,0.372140947668503,0.624075346229121,1.26289438973556,2.69096120282868,0.482443521363367,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0.327726629431476,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,6.20227903603731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.938686832254841,0.847328283455281,0,3.79238381765404,2.58343082713449,2.83470747162333,3.22305328808468,2.29797259643086,47.2198955340358,0,0.170870880797853,0,0,0,0,0,0,0,0,11.4560474161814,0,0,2.26811215725783,3.13632444021703,4.80397640241591,4.18079473792944,4.3806331534428,5.23511883968059,35.9033476018266,1.86401793926078,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0.129920822977795,0.179026695667481,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,6.80191150845634,0,0,0.167884616364078,0,0,0,0.857473516316263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45864030240976,0.419226325255965,0.551530525350042,0.666740183404846,1.23621034343337,0.64183841918363,1.26348605881899,0.25347929989024,0.377252682772152,0.655490552289177,0.640251524048693,0.861532034334199,0,0.579421629724277,0.192909220463705,1.23625770240992,0.441596760403192,1.37147700954166,1.24233064311536,0.476872379894642,0.872078499793971,0.658765662907314,0.761531471025089,1.28049581010941,1.05227884575137,0.950628796921032,1.12228454331548,0.711810108745045,0.492522411877817,0.409231043169689,0.464810523557898,0.964533054905707,0.749431733813838,2.10538447600868,1.71896843238639,0.191288332068843,0.220591419119515,0|short_description=p4@Mark2}} | ||
|EntrezGene=13728 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q05512,Q3T9A3 | |||
|association_with_transcript=326bp_to_NM_001080390,uc008gkq.1_5end | |||
|description=CAGE_peak_4_at_Mark2_5end | |||
|id=chr19:7369567..7369600,- | |||
|ontology_enrichment_celltype=CL:0002563!8.71e-08!9;CL:0002251!8.71e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,5.08e-11,9;CL:0002251,5.08e-11,9;CL:0000239,1.30e-08,6;CL:0000677,1.30e-08,6;CL:0000584,1.30e-08,6;CL:0000075,3.41e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!1.22e-13!59;UBERON:0000160!4.55e-13!43;UBERON:0000344!1.30e-12!15;UBERON:0001242!4.27e-11!13;UBERON:0000060!4.27e-11!13;UBERON:0001262!4.27e-11!13;UBERON:0004786!4.27e-11!13;UBERON:0004119!4.13e-09!130;UBERON:0000925!4.13e-09!130;UBERON:0006595!4.13e-09!130;UBERON:0004923!4.99e-09!24;UBERON:0001007!1.44e-08!128;UBERON:0001555!1.44e-08!128;UBERON:0007026!1.44e-08!128;UBERON:0003350!8.71e-08!9;UBERON:0004808!8.71e-08!9;UBERON:0001277!8.71e-08!9;UBERON:0004921!1.08e-07!126;UBERON:0004185!1.08e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.24e-31,31;UBERON:0005409,1.49e-30,47;UBERON:0000344,2.41e-18,15;UBERON:0001242,4.85e-16,13;UBERON:0001262,4.85e-16,13;UBERON:0004786,4.85e-16,13;UBERON:0001007,5.91e-12,116;UBERON:0001555,5.91e-12,116;UBERON:0007026,5.91e-12,116;UBERON:0004119,1.60e-11,118;UBERON:0000925,1.60e-11,118;UBERON:0006595,1.60e-11,118;UBERON:0004923,3.80e-11,24;UBERON:0003350,5.08e-11,9;UBERON:0004808,5.08e-11,9;UBERON:0001277,5.08e-11,9;UBERON:0004921,1.26e-10,114;UBERON:0000485,1.41e-08,11 | |||
|phase1_expression=0,68.7481553049541,76.8948714568316,56.2583433030704,53.5958431042592,11.9194283057442,15.4184342793047,0.129123323441576,0,0.234064526321993,0,0,0.171200729931206,0,0,0,0,0,0,0,2.04103896362567,0,0,39.1981435843846,33.723164316874,55.1262685550419,34.8917216888851,35.3372821604858,62.8977518400598,63.0075324399827,33.481307108951,0,0,0,5.77703239502549,3.98963148860382,3.87921776898501,0,0,0,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3599426674155,0,0.649776417447669,0,4.21333260395256,0,0,0,0,0,0,0,0.216491041011214,0,0,12.4460428893775,0,0,0.346970653532272,0,0.461230994512117,0,0,0.125666591329675,13.5957232253906,0,0,0,0,0,44.7340226923493,0,0.209446706813455,71.7834325136142,0,0,0,0,0,0.125654352112864,0,0,0,0,0,0.248813941220186,0,0,0,0,0,0.30140963567143,0,0,0,0.258703370739016,0,0,0,0,0.278047249225598,1.74126083261083,2.05782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,121.924530921021,60.2947291992881,0,0,1.9330119198314,7.05892336181699,7.78323153457046,11.7939888189787,49.8255514621737,23.7166494802576,16.8394589896181,22.0841683965677,18.3266241891973,68.3102750577208,47.334232922558,66.3140439937043,0,0.228497025219458,1.1270773567308,1.01825663922657,1.35766741017338,2.45475369616115,5.37510565556187,11.9564219863478,16.0138702398202,16.6586171294431,0,0.166845105716094,0.393117990226406,0.674586337154561,1.01430060694251,2.17059443777175,0.763877555344259,0.863088412352432,0.162135226775035,1.37280706594041,0,0.372140947668503,0.624075346229121,1.26289438973556,2.69096120282868,0.482443521363367,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0.327726629431476,0,0,0,0,0,0,0,0,0,0.252470927204373,0,0,0,0,0,0,0,0,0,0,0.425820255624806,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,6.20227903603731,0,0,0,0,0,0,0,0,0,0,0,0,0,0.938686832254841,0.847328283455281,0,3.79238381765404,2.58343082713449,2.83470747162333,3.22305328808468,2.29797259643086,47.2198955340358,0,0.170870880797853,0,0,0,0,0,0,0,0,11.4560474161814,0,0,2.26811215725783,3.13632444021703,4.80397640241591,4.18079473792944,4.3806331534428,5.23511883968059,35.9033476018266,1.86401793926078,0,0,0,0,0,0,0,0.13020438484395,0,0,0,0,0,0,0.129920822977795,0.179026695667481,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,6.80191150845634,0,0,0.167884616364078,0,0,0,0.857473516316263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45864030240976,0.419226325255965,0.551530525350042,0.666740183404846,1.23621034343337,0.64183841918363,1.26348605881899,0.25347929989024,0.377252682772152,0.655490552289177,0.640251524048693,0.861532034334199,0,0.579421629724277,0.192909220463705,1.23625770240992,0.441596760403192,1.37147700954166,1.24233064311536,0.476872379894642,0.872078499793971,0.658765662907314,0.761531471025089,1.28049581010941,1.05227884575137,0.950628796921032,1.12228454331548,0.711810108745045,0.492522411877817,0.409231043169689,0.464810523557898,0.964533054905707,0.749431733813838,2.10538447600868,1.71896843238639,0.191288332068843,0.220591419119515,0 | |||
|short_description=p4@Mark2 | |||
}} |
Revision as of 18:24, 13 September 2013
Short description: | p4@Mark2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Mark2_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 326bp_to_NM_001080390, uc008gkq.1_5end |
EntrezGene: | Mark2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 5.08e-11 | 9 |
epithelial cell of alimentary canal | 5.08e-11 | 9 |
brush border epithelial cell | 1.30e-08 | 6 |
gut absorptive cell | 1.30e-08 | 6 |
enterocyte | 1.30e-08 | 6 |
columnar/cuboidal epithelial cell | 3.41e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.24e-31 | 31 |
gastrointestinal system | 1.49e-30 | 47 |
mucosa | 2.41e-18 | 15 |
intestinal mucosa | 4.85e-16 | 13 |
wall of intestine | 4.85e-16 | 13 |
gastrointestinal system mucosa | 4.85e-16 | 13 |
digestive system | 5.91e-12 | 116 |
digestive tract | 5.91e-12 | 116 |
primitive gut | 5.91e-12 | 116 |
endoderm-derived structure | 1.60e-11 | 118 |
endoderm | 1.60e-11 | 118 |
presumptive endoderm | 1.60e-11 | 118 |
organ component layer | 3.80e-11 | 24 |
epithelium of mucosa | 5.08e-11 | 9 |
gastrointestinal system epithelium | 5.08e-11 | 9 |
intestinal epithelium | 5.08e-11 | 9 |
subdivision of digestive tract | 1.26e-10 | 114 |
simple columnar epithelium | 1.41e-08 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.