FFCP PHASE1:Hg19::chr6:30899898..30899920,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=389376|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18386|TSSclassifier=S|UniProt=|association_with_transcript=-12bp_to_ENST00000474914_5end|coexpression_cluster_id=C95|description=CAGE_peak_2_at_SFTA2_5end|id=chr6:30899898..30899920,-|ontology_enrichment_celltype=CL:1000449!2.71e-09!16;CL:1000507!8.68e-09!12;CL:1000494!8.68e-09!12;CL:0002681!2.32e-08!13;CL:0002584!2.32e-08!13;CL:1000497!3.44e-08!18;CL:0002518!3.44e-08!18;CL:0000239!6.18e-07!3;CL:1000615!6.18e-07!3;CL:0002306!6.18e-07!3|ontology_enrichment_celltype_v019=CL:0000239;2.25e-12;3!CL:1000615;2.25e-12;3!CL:0002306;2.25e-12;3!CL:0000313;3.10e-10;1!CL:0002681;4.36e-07;12!CL:0002584;4.36e-07;12|ontology_enrichment_celltype_v019_2=CL:0000239,2.00e-12,3;CL:1000615,2.00e-12,3;CL:0002306,2.00e-12,3;CL:0000313,3.10e-10,1;CL:0002681,4.18e-07,12;CL:0002584,4.18e-07,12|ontology_enrichment_development_v019=UBERON:0009143;6.61e-10;1!UBERON:0006242;9.82e-10;1!UBERON:0001041;2.75e-07;30|ontology_enrichment_disease=DOID:299!5.65e-10!25|ontology_enrichment_disease_v019=DOID:2152;3.10e-10;1|ontology_enrichment_disease_v019_2=DOID:2152,3.10e-10,1|ontology_enrichment_uberon=UBERON:0000058!4.28e-12!26;UBERON:0002294!2.95e-10!7;UBERON:0001173!2.95e-10!7;UBERON:0004912!2.95e-10!7;UBERON:0003127!1.36e-09!2;UBERON:0004211!2.71e-09!16;UBERON:0001285!2.71e-09!16;UBERON:0007684!2.71e-09!16;UBERON:0003220!2.71e-09!16;UBERON:0004208!2.71e-09!16;UBERON:0000341!3.50e-09!2;UBERON:0009773!8.68e-09!12;UBERON:0001231!8.68e-09!12;UBERON:0004810!8.68e-09!12;UBERON:0006555!1.04e-08!17;UBERON:0005103!1.04e-08!17;UBERON:0000083!1.04e-08!17;UBERON:0009201!1.04e-08!17;UBERON:0004819!1.04e-08!17;UBERON:0006553!1.04e-08!17;UBERON:0003074!1.04e-08!17;UBERON:0003060!1.04e-08!17;UBERON:0001225!2.32e-08!13;UBERON:0008987!2.32e-08!13;UBERON:0000464!2.38e-08!104;UBERON:0000466!3.13e-08!126;UBERON:0000080!3.44e-08!18;UBERON:0002120!3.44e-08!18;UBERON:0004875!3.44e-08!18;UBERON:0005721!3.44e-08!18;UBERON:0005754!3.44e-08!18;UBERON:0007297!3.44e-08!18;UBERON:0003064!7.29e-08!37;UBERON:0006554!7.87e-08!44;UBERON:0001008!1.29e-07!45;UBERON:0005911!1.88e-07!82;UBERON:0004876!2.63e-07!20;UBERON:0004119!3.16e-07!169;UBERON:0000925!3.16e-07!169;UBERON:0006595!3.16e-07!169;UBERON:0006853!6.18e-07!3;UBERON:0007685!6.18e-07!3;UBERON:0004134!6.18e-07!3;UBERON:0003887!6.29e-07!21;UBERON:0002113!6.39e-07!27;UBERON:0003918!6.39e-07!27;UBERON:0005095!6.39e-07!27;UBERON:0007687!6.39e-07!27;UBERON:0005177!7.07e-07!107;UBERON:0001851!9.89e-07!16|ontology_enrichment_uberon_v019=UBERON:0006853;2.25e-12;3!UBERON:0007685;2.25e-12;3!UBERON:0004134;2.25e-12;3!UBERON:0002294;1.27e-11;7!UBERON:0001173;1.27e-11;7!UBERON:0002171;1.65e-10;1!UBERON:0006518;1.65e-10;1!UBERON:0008949;1.65e-10;1!UBERON:0000101;1.65e-10;1!UBERON:0002167;1.65e-10;1!UBERON:0004911;3.10e-10;1!UBERON:0005795;6.61e-10;1!UBERON:0002394;1.22e-09;4!UBERON:0003928;1.22e-09;4!UBERON:0005178;1.44e-07;34!UBERON:0002224;1.44e-07;34!UBERON:0001225;4.36e-07;12!UBERON:0008987;4.36e-07;12|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.00e-12,3;UBERON:0007685,2.00e-12,3;UBERON:0004134,2.00e-12,3;UBERON:0002171,1.65e-10,1;UBERON:0006518,1.65e-10,1;UBERON:0008949,1.65e-10,1;UBERON:0000101,1.65e-10,1;UBERON:0002167,1.65e-10,1;UBERON:0004911,3.10e-10,1;UBERON:0002294,3.92e-09,9;UBERON:0001173,3.92e-09,9;UBERON:0004912,3.92e-09,9;UBERON:0005178,6.84e-09,34;UBERON:0002224,6.84e-09,34;UBERON:0005181,1.27e-08,35;UBERON:0005911,2.40e-07,82;UBERON:0005177,4.17e-07,101;UBERON:0001225,4.18e-07,12;UBERON:0008987,4.18e-07,12;UBERON:0004921,4.67e-07,118;UBERON:0001041,7.95e-07,87|phase1_expression=0,0,0,0,0,0,0,0,0,5.40614660303319,43.2636724142905,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.23402482258874,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.79654910318143,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0.200506470303285,0,0,0,0,0.902399225814824,0.385076685522074,0,0,0.105551628892876,0,0,0,0,0,0,2.80363900349542,2.49322802678617,0,0,0,0,0,0,19.2686691781241,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0.576570202095319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.8287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.73130810122743,0,0,0,0,0,0,0,0,0,0,0,0.211125408127993,0,0,0,0,0,0,4.673154259661,4.65455054156584,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=389376 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18386 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_ENST00000474914_5end | |||
|coexpression_cluster_id=C95 | |||
|description=CAGE_peak_2_at_SFTA2_5end | |||
|id=chr6:30899898..30899920,- | |||
|ontology_enrichment_celltype=CL:1000449!2.71e-09!16;CL:1000507!8.68e-09!12;CL:1000494!8.68e-09!12;CL:0002681!2.32e-08!13;CL:0002584!2.32e-08!13;CL:1000497!3.44e-08!18;CL:0002518!3.44e-08!18;CL:0000239!6.18e-07!3;CL:1000615!6.18e-07!3;CL:0002306!6.18e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000239;2.25e-12;3!CL:1000615;2.25e-12;3!CL:0002306;2.25e-12;3!CL:0000313;3.10e-10;1!CL:0002681;4.36e-07;12!CL:0002584;4.36e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,2.00e-12,3;CL:1000615,2.00e-12,3;CL:0002306,2.00e-12,3;CL:0000313,3.10e-10,1;CL:0002681,4.18e-07,12;CL:0002584,4.18e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0009143;6.61e-10;1!UBERON:0006242;9.82e-10;1!UBERON:0001041;2.75e-07;30 | |||
|ontology_enrichment_disease=DOID:299!5.65e-10!25 | |||
|ontology_enrichment_disease_v019=DOID:2152;3.10e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:2152,3.10e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0000058!4.28e-12!26;UBERON:0002294!2.95e-10!7;UBERON:0001173!2.95e-10!7;UBERON:0004912!2.95e-10!7;UBERON:0003127!1.36e-09!2;UBERON:0004211!2.71e-09!16;UBERON:0001285!2.71e-09!16;UBERON:0007684!2.71e-09!16;UBERON:0003220!2.71e-09!16;UBERON:0004208!2.71e-09!16;UBERON:0000341!3.50e-09!2;UBERON:0009773!8.68e-09!12;UBERON:0001231!8.68e-09!12;UBERON:0004810!8.68e-09!12;UBERON:0006555!1.04e-08!17;UBERON:0005103!1.04e-08!17;UBERON:0000083!1.04e-08!17;UBERON:0009201!1.04e-08!17;UBERON:0004819!1.04e-08!17;UBERON:0006553!1.04e-08!17;UBERON:0003074!1.04e-08!17;UBERON:0003060!1.04e-08!17;UBERON:0001225!2.32e-08!13;UBERON:0008987!2.32e-08!13;UBERON:0000464!2.38e-08!104;UBERON:0000466!3.13e-08!126;UBERON:0000080!3.44e-08!18;UBERON:0002120!3.44e-08!18;UBERON:0004875!3.44e-08!18;UBERON:0005721!3.44e-08!18;UBERON:0005754!3.44e-08!18;UBERON:0007297!3.44e-08!18;UBERON:0003064!7.29e-08!37;UBERON:0006554!7.87e-08!44;UBERON:0001008!1.29e-07!45;UBERON:0005911!1.88e-07!82;UBERON:0004876!2.63e-07!20;UBERON:0004119!3.16e-07!169;UBERON:0000925!3.16e-07!169;UBERON:0006595!3.16e-07!169;UBERON:0006853!6.18e-07!3;UBERON:0007685!6.18e-07!3;UBERON:0004134!6.18e-07!3;UBERON:0003887!6.29e-07!21;UBERON:0002113!6.39e-07!27;UBERON:0003918!6.39e-07!27;UBERON:0005095!6.39e-07!27;UBERON:0007687!6.39e-07!27;UBERON:0005177!7.07e-07!107;UBERON:0001851!9.89e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0006853;2.25e-12;3!UBERON:0007685;2.25e-12;3!UBERON:0004134;2.25e-12;3!UBERON:0002294;1.27e-11;7!UBERON:0001173;1.27e-11;7!UBERON:0002171;1.65e-10;1!UBERON:0006518;1.65e-10;1!UBERON:0008949;1.65e-10;1!UBERON:0000101;1.65e-10;1!UBERON:0002167;1.65e-10;1!UBERON:0004911;3.10e-10;1!UBERON:0005795;6.61e-10;1!UBERON:0002394;1.22e-09;4!UBERON:0003928;1.22e-09;4!UBERON:0005178;1.44e-07;34!UBERON:0002224;1.44e-07;34!UBERON:0001225;4.36e-07;12!UBERON:0008987;4.36e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006853,2.00e-12,3;UBERON:0007685,2.00e-12,3;UBERON:0004134,2.00e-12,3;UBERON:0002171,1.65e-10,1;UBERON:0006518,1.65e-10,1;UBERON:0008949,1.65e-10,1;UBERON:0000101,1.65e-10,1;UBERON:0002167,1.65e-10,1;UBERON:0004911,3.10e-10,1;UBERON:0002294,3.92e-09,9;UBERON:0001173,3.92e-09,9;UBERON:0004912,3.92e-09,9;UBERON:0005178,6.84e-09,34;UBERON:0002224,6.84e-09,34;UBERON:0005181,1.27e-08,35;UBERON:0005911,2.40e-07,82;UBERON:0005177,4.17e-07,101;UBERON:0001225,4.18e-07,12;UBERON:0008987,4.18e-07,12;UBERON:0004921,4.67e-07,118;UBERON:0001041,7.95e-07,87 | |||
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|short_description=p2@SFTA2 | |||
}} |
Revision as of 20:07, 13 September 2013
Short description: | p2@SFTA2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SFTA2_5end |
Coexpression cluster: | C95_lung_aorta_trachea_penis_Alveolar_throat_endometrioid |
Association with transcript: | -12bp_to_ENST00000474914_5end |
EntrezGene: | SFTA2 |
HGNC: | 18386 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 2.00e-12 | 3 |
kidney cortex tubule cell | 2.00e-12 | 3 |
epithelial cell of proximal tubule | 2.00e-12 | 3 |
serous secreting cell | 3.10e-10 | 1 |
kidney cortical cell | 4.18e-07 | 12 |
renal cortical epithelial cell | 4.18e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
renal cortex tubule | 2.00e-12 | 3 |
region of nephron tubule | 2.00e-12 | 3 |
proximal tubule | 2.00e-12 | 3 |
lower lobe of right lung | 1.65e-10 | 1 |
right lung lobe | 1.65e-10 | 1 |
lower lobe of lung | 1.65e-10 | 1 |
lobe of lung | 1.65e-10 | 1 |
right lung | 1.65e-10 | 1 |
epithelium of female gonad | 3.10e-10 | 1 |
biliary system | 3.92e-09 | 9 |
biliary tree | 3.92e-09 | 9 |
biliary bud | 3.92e-09 | 9 |
thoracic cavity element | 6.84e-09 | 34 |
thoracic cavity | 6.84e-09 | 34 |
thoracic segment organ | 1.27e-08 | 35 |
endo-epithelium | 2.40e-07 | 82 |
trunk region element | 4.17e-07 | 101 |
cortex of kidney | 4.18e-07 | 12 |
renal parenchyma | 4.18e-07 | 12 |
subdivision of digestive tract | 4.67e-07 | 118 |
foregut | 7.95e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
ovary epithelial cancer | 3.10e-10 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.