FFCP PHASE1:Mm9::chr1:63492580..63492594,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=23792|HGNC=|MCL_coexpression_id=52|UniProt=|association_with_transcript=71bp_to_ENSMUST00000146403_5end|description=CAGE_peak_4_at_Adam23_5end|id=chr1:63492580..63492594,+|ontology_enrichment_celltype=CL:0000055!6.89e-12!50;CL:0000393!7.30e-11!39;CL:0000211!7.30e-11!39;CL:0000221!1.47e-09!44;CL:0000133!1.47e-09!44;CL:0002319!5.39e-09!43;CL:0000540!2.80e-08!33;CL:0000047!2.80e-08!33;CL:0000031!2.80e-08!33;CL:0000404!2.80e-08!33|ontology_enrichment_celltype_v019_2=CL:0000393,6.34e-14,39;CL:0000211,6.34e-14,39;CL:0002321,1.41e-10,70;CL:0000540,2.01e-09,33;CL:0000047,2.01e-09,33;CL:0000031,2.01e-09,33;CL:0000404,2.01e-09,33;CL:0000221,6.04e-08,44;CL:0000133,6.04e-08,44;CL:0000222,1.03e-07,7;CL:0000107,2.28e-07,9;CL:0002319,4.20e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.33e-15!102;UBERON:0000924!1.33e-15!102;UBERON:0006601!1.33e-15!102;UBERON:0000073!3.22e-15!75;UBERON:0001016!3.22e-15!75;UBERON:0001017!1.01e-14!73;UBERON:0005743!1.01e-14!73;UBERON:0001049!1.47e-09!52;UBERON:0005068!1.47e-09!52;UBERON:0006241!1.47e-09!52;UBERON:0007135!1.47e-09!52;UBERON:0002346!2.15e-09!71;UBERON:0003075!2.15e-09!71;UBERON:0007284!2.15e-09!71;UBERON:0000955!6.18e-09!50;UBERON:0006238!6.18e-09!50;UBERON:0000033!9.73e-09!63;UBERON:0002616!1.35e-08!49;UBERON:0002020!4.08e-07!34|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.10e-14,75;UBERON:0001017,1.08e-13,73;UBERON:0004121,3.24e-11,95;UBERON:0000924,3.24e-11,95;UBERON:0006601,3.24e-11,95;UBERON:0000073,1.48e-10,54;UBERON:0002020,3.80e-09,34;UBERON:0001049,7.86e-09,52;UBERON:0005068,7.86e-09,52;UBERON:0006241,7.86e-09,52;UBERON:0007135,7.86e-09,52;UBERON:0002346,7.75e-08,64;UBERON:0003075,7.75e-08,64;UBERON:0007284,7.75e-08,64;UBERON:0000010,2.08e-07,11;UBERON:0002410,2.28e-07,9;UBERON:0003528,2.36e-07,29;UBERON:0002791,2.36e-07,29;UBERON:0001893,2.36e-07,29;UBERON:0002021,4.93e-07,10;UBERON:0000411,4.93e-07,10;UBERON:0001950,4.93e-07,10;UBERON:0010371,5.59e-07,73|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0.137114433605739,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64383317748712,5.06884656097573,3.67093504323363,0.782391344348039,0.65407546914134,0.659058548203415,0,0.839918529752175,0,0,0,0,0.257259436035947,1.14613375975503,2.06268836910977,0.404632921719196,0,0,0.338844532069132,0,0.899899717281399,0.988866362566974,0.7104801149461,0.599200221036809,0.768436610643109,0,0.135005938331691,0.420649922702764,0.856952953211411,2.20868540951614,0.244981598429908,0.575072826109418,0,4.40463523997555,2.55374676170375,2.30409799884365,0.923204014111357,0.731901148819277,1.56274011167028,1.95428099300967,2.25105044012672,1.5279824777681,2.35702868378934,1.56608848879013,0.745597783301202,0.37863096666592,1.36028808192214,1.44932244350839,0.860423876981386,0,0,0,0,0.140444420131752,2.38602451609281,1.29893002301434,3.5333957451034,3.66192891419369,5.13305909657271,12.7402619853323,7.11066703153331,0,0,0,0.22836775943812,1.03575153458869,0.29688427812965,0.693941307064543,0,0,0.452167921657868,1.05829836422134,0,2.47194967734374,0.144599356919912,0,0.485300549842228,0,0,0,0.878342391034642,1.46612694769419,0.255457055208591,0,0,0,0.449371918214468,4.11750542536764,0.502617408451458,1.91206752211504,1.53429274398198,0.83115217823824,2.92034273521964,0.712875546952214,0,0,0.631325567659422,0.130120442962704,0,0.180062129805349,0.60281927134286,0.476255494059295,0.12811372028485,0.374806898238915,0.517406741478031,0,0,0.175951124163949,0,0.278047249225598,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0,0,0.536546802799238,0.233530684734339,0.16455984991348,0.164167464079095,0,0,0,0,1.47202963994889,0.514523061896422,0,0,0.213288250535234,0,0.128867461322093,0.403367049246685,0,0,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0.280543279561274,0,0,0,0.123397163921801,1.1858105083486,0,0,0,0,0,0.25462585178142,0.575392274901621,0.486405680325106,0.549122826376163,1.43768206527355,0.372140947668503,0,0.757736633841335,0,0,0.184753190166605,0,0.488894929326078,0,0,0,0.952174563544055,0.585400943573396,0.157635144106191,0,0.478364305972461,0.655453258862952,0.518054945597687,0.144649058581512,0,0,0.491764273019036,0.551873492609465,1.60550589987792,1.40654023910644,13.114795630134,0.504941854408746,0.315508219416257,2.73307121007647,1.72338718186239,0.716906393857656,1.78238939265915,2.83076530788832,1.21443210502468,1.46127928955656,1.58115111178609,0.963963949265421,0.141940085208269,0,0.162886959353576,0,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0,1.05418608574999,0,0.340439605753788,0.36012218806262,0.646793418913773,0.214337035031592,0,0.178368817602071,0.493647061806363,0,0,0.21183207086382,0.220528398054962,0.65954501176592,0.645857706783622,0.663442174209714,0.119372344003136,0.32828179949012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| ||
|EntrezGene=23792 | |||
|HGNC= | |||
|MCL_coexpression_id=52 | |||
|UniProt= | |||
|association_with_transcript=71bp_to_ENSMUST00000146403_5end | |||
|description=CAGE_peak_4_at_Adam23_5end | |||
|id=chr1:63492580..63492594,+ | |||
|ontology_enrichment_celltype=CL:0000055!6.89e-12!50;CL:0000393!7.30e-11!39;CL:0000211!7.30e-11!39;CL:0000221!1.47e-09!44;CL:0000133!1.47e-09!44;CL:0002319!5.39e-09!43;CL:0000540!2.80e-08!33;CL:0000047!2.80e-08!33;CL:0000031!2.80e-08!33;CL:0000404!2.80e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,6.34e-14,39;CL:0000211,6.34e-14,39;CL:0002321,1.41e-10,70;CL:0000540,2.01e-09,33;CL:0000047,2.01e-09,33;CL:0000031,2.01e-09,33;CL:0000404,2.01e-09,33;CL:0000221,6.04e-08,44;CL:0000133,6.04e-08,44;CL:0000222,1.03e-07,7;CL:0000107,2.28e-07,9;CL:0002319,4.20e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.33e-15!102;UBERON:0000924!1.33e-15!102;UBERON:0006601!1.33e-15!102;UBERON:0000073!3.22e-15!75;UBERON:0001016!3.22e-15!75;UBERON:0001017!1.01e-14!73;UBERON:0005743!1.01e-14!73;UBERON:0001049!1.47e-09!52;UBERON:0005068!1.47e-09!52;UBERON:0006241!1.47e-09!52;UBERON:0007135!1.47e-09!52;UBERON:0002346!2.15e-09!71;UBERON:0003075!2.15e-09!71;UBERON:0007284!2.15e-09!71;UBERON:0000955!6.18e-09!50;UBERON:0006238!6.18e-09!50;UBERON:0000033!9.73e-09!63;UBERON:0002616!1.35e-08!49;UBERON:0002020!4.08e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.10e-14,75;UBERON:0001017,1.08e-13,73;UBERON:0004121,3.24e-11,95;UBERON:0000924,3.24e-11,95;UBERON:0006601,3.24e-11,95;UBERON:0000073,1.48e-10,54;UBERON:0002020,3.80e-09,34;UBERON:0001049,7.86e-09,52;UBERON:0005068,7.86e-09,52;UBERON:0006241,7.86e-09,52;UBERON:0007135,7.86e-09,52;UBERON:0002346,7.75e-08,64;UBERON:0003075,7.75e-08,64;UBERON:0007284,7.75e-08,64;UBERON:0000010,2.08e-07,11;UBERON:0002410,2.28e-07,9;UBERON:0003528,2.36e-07,29;UBERON:0002791,2.36e-07,29;UBERON:0001893,2.36e-07,29;UBERON:0002021,4.93e-07,10;UBERON:0000411,4.93e-07,10;UBERON:0001950,4.93e-07,10;UBERON:0010371,5.59e-07,73 | |||
|phase1_expression=0.640595388419176,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699561878128147,0,0.137114433605739,0,0.510259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.64383317748712,5.06884656097573,3.67093504323363,0.782391344348039,0.65407546914134,0.659058548203415,0,0.839918529752175,0,0,0,0,0.257259436035947,1.14613375975503,2.06268836910977,0.404632921719196,0,0,0.338844532069132,0,0.899899717281399,0.988866362566974,0.7104801149461,0.599200221036809,0.768436610643109,0,0.135005938331691,0.420649922702764,0.856952953211411,2.20868540951614,0.244981598429908,0.575072826109418,0,4.40463523997555,2.55374676170375,2.30409799884365,0.923204014111357,0.731901148819277,1.56274011167028,1.95428099300967,2.25105044012672,1.5279824777681,2.35702868378934,1.56608848879013,0.745597783301202,0.37863096666592,1.36028808192214,1.44932244350839,0.860423876981386,0,0,0,0,0.140444420131752,2.38602451609281,1.29893002301434,3.5333957451034,3.66192891419369,5.13305909657271,12.7402619853323,7.11066703153331,0,0,0,0.22836775943812,1.03575153458869,0.29688427812965,0.693941307064543,0,0,0.452167921657868,1.05829836422134,0,2.47194967734374,0.144599356919912,0,0.485300549842228,0,0,0,0.878342391034642,1.46612694769419,0.255457055208591,0,0,0,0.449371918214468,4.11750542536764,0.502617408451458,1.91206752211504,1.53429274398198,0.83115217823824,2.92034273521964,0.712875546952214,0,0,0.631325567659422,0.130120442962704,0,0.180062129805349,0.60281927134286,0.476255494059295,0.12811372028485,0.374806898238915,0.517406741478031,0,0,0.175951124163949,0,0.278047249225598,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,0,0.234526059981096,0,0,0.196764231747404,0,0,0.536546802799238,0.233530684734339,0.16455984991348,0.164167464079095,0,0,0,0,1.47202963994889,0.514523061896422,0,0,0.213288250535234,0,0.128867461322093,0.403367049246685,0,0,0,0.329397909448022,0.251335208800269,0.198956472041151,0.19496408711912,0,0,0,0,0.114248512609729,0,0,0.193952487167626,0.280543279561274,0,0,0,0.123397163921801,1.1858105083486,0,0,0,0,0,0.25462585178142,0.575392274901621,0.486405680325106,0.549122826376163,1.43768206527355,0.372140947668503,0,0.757736633841335,0,0,0.184753190166605,0,0.488894929326078,0,0,0,0.952174563544055,0.585400943573396,0.157635144106191,0,0.478364305972461,0.655453258862952,0.518054945597687,0.144649058581512,0,0,0.491764273019036,0.551873492609465,1.60550589987792,1.40654023910644,13.114795630134,0.504941854408746,0.315508219416257,2.73307121007647,1.72338718186239,0.716906393857656,1.78238939265915,2.83076530788832,1.21443210502468,1.46127928955656,1.58115111178609,0.963963949265421,0.141940085208269,0,0.162886959353576,0,0,0,0,0,0,0.307435147943927,0.258428293168221,0,0,0,1.05418608574999,0,0.340439605753788,0.36012218806262,0.646793418913773,0.214337035031592,0,0.178368817602071,0.493647061806363,0,0,0.21183207086382,0.220528398054962,0.65954501176592,0.645857706783622,0.663442174209714,0.119372344003136,0.328281799490123,0,2.59595422814714,0.170870880797853,0,0,0,0.136694227721025,0.686334519619568,0,0,0,0,0.158167996790568,0,0.216010681643603,0.418176592028937,0.218362563746178,0.134864346384821,0.661227645802687,0.26175594198403,0.388844919875379,0,0,0.598066184175915,1.48912641411388,2.13896307178452,1.16243841129958,1.01373675294467,1.5256441023948,0.2604087696879,0.524296722128554,0,0.864090018773596,0,0.405450430580328,0.308132871494482,0.25984164595559,0,0,0.120195449519969,0,0.201932899896295,0.304827226619999,0.100826185136841,0,0.192423683280659,0.350630706544707,0.226730383615211,0.221985953374065,0,0,1.73870634628971,0,0,0.428736758158132,0,2.82375921308533,2.76195141904306,0,1.71853182343688,2.74033007908257,2.2661816921691,0,2.2516060161211,1.35942722695261,0,0.207574695168353,0,0,0.729320151204882,0.209613162627982,0.183843508450014,0.222246727801615,0.618105171716683,0.320919209591815,0.758091635291392,0.25347929989024,1.32038438970253,0.187283014939765,0.576226371643824,0.689225627467359,0.476293691283074,0.579421629724277,0.77163688185482,0,0.147198920134397,0.342869252385415,0.532427418478012,0.953744759789284,0.436039249896986,0.470546902076653,0.423073039458382,0.548783918618318,0,0.679020569229309,0,0.474540072496697,0.394017929502254,0.818462086339379,0.619747364743864,0.385813221962283,0.249810577937946,0.233931608445408,1.07435527024149,0.191288332068843,0.661774257358546,0.463735671240843 | |||
|short_description=p4@Adam23 | |||
}} |
Revision as of 20:41, 13 September 2013
Short description: | p4@Adam23 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Adam23_5end |
Coexpression cluster: | MCL_coexpression_mm9:52 |
Association with transcript: | 71bp_to_ENSMUST00000146403_5end |
EntrezGene: | Adam23 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 6.34e-14 | 39 |
electrically active cell | 6.34e-14 | 39 |
embryonic cell | 1.41e-10 | 70 |
neuron | 2.01e-09 | 33 |
neuronal stem cell | 2.01e-09 | 33 |
neuroblast | 2.01e-09 | 33 |
electrically signaling cell | 2.01e-09 | 33 |
ectodermal cell | 6.04e-08 | 44 |
neurectodermal cell | 6.04e-08 | 44 |
mesodermal cell | 1.03e-07 | 7 |
autonomic neuron | 2.28e-07 | 9 |
neural cell | 4.20e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.10e-14 | 75 |
central nervous system | 1.08e-13 | 73 |
ectoderm-derived structure | 3.24e-11 | 95 |
ectoderm | 3.24e-11 | 95 |
presumptive ectoderm | 3.24e-11 | 95 |
regional part of nervous system | 1.48e-10 | 54 |
gray matter | 3.80e-09 | 34 |
neural tube | 7.86e-09 | 52 |
neural rod | 7.86e-09 | 52 |
future spinal cord | 7.86e-09 | 52 |
neural keel | 7.86e-09 | 52 |
neurectoderm | 7.75e-08 | 64 |
neural plate | 7.75e-08 | 64 |
presumptive neural plate | 7.75e-08 | 64 |
peripheral nervous system | 2.08e-07 | 11 |
autonomic nervous system | 2.28e-07 | 9 |
brain grey matter | 2.36e-07 | 29 |
regional part of telencephalon | 2.36e-07 | 29 |
telencephalon | 2.36e-07 | 29 |
occipital lobe | 4.93e-07 | 10 |
visual cortex | 4.93e-07 | 10 |
neocortex | 4.93e-07 | 10 |
ecto-epithelium | 5.59e-07 | 73 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.