FFCP PHASE1:Mm9::chr2:167328729..167328738,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=81018|HGNC=|MCL_coexpression_id=12|UniProt=Q9ET26|association_with_transcript=140bp_to_ENSMUST00000078050_5end|description=CAGE_peak_5_at_Rnf114_5end|id=chr2:167328729..167328738,+|ontology_enrichment_celltype=CL:0002563!2.09e-11!9;CL:0002251!2.09e-11!9;CL:0000239!5.25e-09!6;CL:0000677!5.25e-09!6;CL:0000212!5.25e-09!6;CL:0000584!5.25e-09!6;CL:0000066!1.33e-07!25;CL:0000075!1.59e-07!7|ontology_enrichment_celltype_v019_2=CL:0000239,4.91e-17,6;CL:0000677,4.91e-17,6;CL:0000584,4.91e-17,6;CL:0000075,1.42e-14,7;CL:0000682,3.02e-12,3;CL:0002563,2.76e-11,9;CL:0002251,2.76e-11,9;CL:0000066,3.26e-09,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!9.54e-19!15;UBERON:0001242!1.65e-16!13;UBERON:0000060!1.65e-16!13;UBERON:0001262!1.65e-16!13;UBERON:0004786!1.65e-16!13;UBERON:0000160!1.88e-16!43;UBERON:0005409!9.28e-15!59;UBERON:0003350!2.09e-11!9;UBERON:0004808!2.09e-11!9;UBERON:0001277!2.09e-11!9;UBERON:0004923!3.19e-11!24;UBERON:0004119!5.58e-11!130;UBERON:0000925!5.58e-11!130;UBERON:0006595!5.58e-11!130;UBERON:0001007!1.15e-10!128;UBERON:0001555!1.15e-10!128;UBERON:0007026!1.15e-10!128;UBERON:0004921!1.88e-09!126;UBERON:0004185!1.88e-09!126;UBERON:0000485!6.91e-09!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.12e-34,31;UBERON:0000344,2.44e-25,15;UBERON:0005409,3.78e-24,47;UBERON:0001242,4.57e-24,13;UBERON:0001262,4.57e-24,13;UBERON:0004786,4.57e-24,13;UBERON:0002108,6.86e-16,4;UBERON:0004923,3.18e-15,24;UBERON:0000331,2.12e-12,3;UBERON:0002116,2.12e-12,3;UBERON:0001204,2.12e-12,3;UBERON:0001168,2.12e-12,3;UBERON:0003350,2.76e-11,9;UBERON:0004808,2.76e-11,9;UBERON:0001277,2.76e-11,9;UBERON:0000485,3.46e-09,11;UBERON:0001007,5.41e-09,116;UBERON:0001555,5.41e-09,116;UBERON:0007026,5.41e-09,116;UBERON:0001155,7.21e-09,2;UBERON:0000059,7.21e-09,2;UBERON:0004119,8.78e-09,118;UBERON:0000925,8.78e-09,118;UBERON:0006595,8.78e-09,118;UBERON:0004921,4.58e-08,114|phase1_expression=0,5.58360652222978,6.82498859084304,4.53696316960245,5.00895729946347,1.34303417529512,0.700837921786577,0,0.140788722151667,0,0,0,0,0,0.333109761815663,0,0.699561878128147,0.157731082679119,0,0,0,0,0,0.799962113967033,1.83527424853736,3.44539178469012,1.7230479846363,3.01659725760245,3.99049180858385,4.78857246543868,1.10865255327652,0,0,0,0.577703239502549,0.498703936075477,0.204169356262369,0.418531630736908,0,0.523523743973798,0,1.36609096991689,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0.579728977403356,0.860423876981386,0,0,0,0.448026887097336,0,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420883711772948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0.32833492815819,0.0810688095458557,0,0.219550115291051,0,0,0,8.59088835757875,1.32225283331772,0,0,0,0,0.22237804384487,0.190225626112559,1.89811624617805,0.658795818896044,1.25667604400135,0.795825888164603,0.58489226135736,0,1.94524244887225,3.78368419183298,0,0,0,0,0,0,0,0.295220295959204,0.31399745568275,0.246794327843601,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0.312037673114561,0,0.358794827043824,0.964887042726734,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,0,0.54390568381871,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0,0,0,0,2.33184669303881,0,0,0,0,0,0,0,0,0.139951452323658,0,0.954670618015114,0,0.203319467126849,0,0,0.218362563746178,0,0.165306911450672,0,2.98114438571124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0.231768651889711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0|short_description=p5@Rnf114}} | ||
|EntrezGene=81018 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q9ET26 | |||
|association_with_transcript=140bp_to_ENSMUST00000078050_5end | |||
|description=CAGE_peak_5_at_Rnf114_5end | |||
|id=chr2:167328729..167328738,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.09e-11!9;CL:0002251!2.09e-11!9;CL:0000239!5.25e-09!6;CL:0000677!5.25e-09!6;CL:0000212!5.25e-09!6;CL:0000584!5.25e-09!6;CL:0000066!1.33e-07!25;CL:0000075!1.59e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,4.91e-17,6;CL:0000677,4.91e-17,6;CL:0000584,4.91e-17,6;CL:0000075,1.42e-14,7;CL:0000682,3.02e-12,3;CL:0002563,2.76e-11,9;CL:0002251,2.76e-11,9;CL:0000066,3.26e-09,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!9.54e-19!15;UBERON:0001242!1.65e-16!13;UBERON:0000060!1.65e-16!13;UBERON:0001262!1.65e-16!13;UBERON:0004786!1.65e-16!13;UBERON:0000160!1.88e-16!43;UBERON:0005409!9.28e-15!59;UBERON:0003350!2.09e-11!9;UBERON:0004808!2.09e-11!9;UBERON:0001277!2.09e-11!9;UBERON:0004923!3.19e-11!24;UBERON:0004119!5.58e-11!130;UBERON:0000925!5.58e-11!130;UBERON:0006595!5.58e-11!130;UBERON:0001007!1.15e-10!128;UBERON:0001555!1.15e-10!128;UBERON:0007026!1.15e-10!128;UBERON:0004921!1.88e-09!126;UBERON:0004185!1.88e-09!126;UBERON:0000485!6.91e-09!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.12e-34,31;UBERON:0000344,2.44e-25,15;UBERON:0005409,3.78e-24,47;UBERON:0001242,4.57e-24,13;UBERON:0001262,4.57e-24,13;UBERON:0004786,4.57e-24,13;UBERON:0002108,6.86e-16,4;UBERON:0004923,3.18e-15,24;UBERON:0000331,2.12e-12,3;UBERON:0002116,2.12e-12,3;UBERON:0001204,2.12e-12,3;UBERON:0001168,2.12e-12,3;UBERON:0003350,2.76e-11,9;UBERON:0004808,2.76e-11,9;UBERON:0001277,2.76e-11,9;UBERON:0000485,3.46e-09,11;UBERON:0001007,5.41e-09,116;UBERON:0001555,5.41e-09,116;UBERON:0007026,5.41e-09,116;UBERON:0001155,7.21e-09,2;UBERON:0000059,7.21e-09,2;UBERON:0004119,8.78e-09,118;UBERON:0000925,8.78e-09,118;UBERON:0006595,8.78e-09,118;UBERON:0004921,4.58e-08,114 | |||
|phase1_expression=0,5.58360652222978,6.82498859084304,4.53696316960245,5.00895729946347,1.34303417529512,0.700837921786577,0,0.140788722151667,0,0,0,0,0,0.333109761815663,0,0.699561878128147,0.157731082679119,0,0,0,0,0,0.799962113967033,1.83527424853736,3.44539178469012,1.7230479846363,3.01659725760245,3.99049180858385,4.78857246543868,1.10865255327652,0,0,0,0.577703239502549,0.498703936075477,0.204169356262369,0.418531630736908,0,0.523523743973798,0,1.36609096991689,0,0,0,0,0,0,0,0,0,0,0.167782606057736,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384218305321555,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0.0914876436024097,0,0,0,0,0,0,0,0,0,0.579728977403356,0.860423876981386,0,0,0,0.448026887097336,0,0,0,0,0,0,0,0,0,0,0,0.91347103775248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.72783522436244,0,0,2.81002760729451,0,0,0,0,0,0,0,0,0,0,0,0,0,0.420883711772948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257347907114715,0,0,0,0,0,0,0,0,0,0,0,0.32833492815819,0.0810688095458557,0,0.219550115291051,0,0,0,8.59088835757875,1.32225283331772,0,0,0,0,0.22237804384487,0.190225626112559,1.89811624617805,0.658795818896044,1.25667604400135,0.795825888164603,0.58489226135736,0,1.94524244887225,3.78368419183298,0,0,0,0,0,0,0,0.295220295959204,0.31399745568275,0.246794327843601,0,0,0.196558995113203,0.224862112384854,0,0,0,0,0.162135226775035,0.274561413188081,0,0,0.312037673114561,0,0.358794827043824,0.964887042726734,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,0,0.54390568381871,0,0,0,0.117211686592203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0,0,0,0,0,0,2.33184669303881,0,0,0,0,0,0,0,0,0.139951452323658,0,0.954670618015114,0,0.203319467126849,0,0,0.218362563746178,0,0.165306911450672,0,2.98114438571124,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0.0974578807397524,0,0,0,0,0,0,0,0.187682475451182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0.206035057238894,0,0,0,0,0,0,0,0,0.231768651889711,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.220591419119515,0 | |||
|short_description=p5@Rnf114 | |||
}} |
Revision as of 22:59, 13 September 2013
Short description: | p5@Rnf114 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Rnf114_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | 140bp_to_ENSMUST00000078050_5end |
EntrezGene: | Rnf114 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 4.91e-17 | 6 |
gut absorptive cell | 4.91e-17 | 6 |
enterocyte | 4.91e-17 | 6 |
columnar/cuboidal epithelial cell | 1.42e-14 | 7 |
M cell of gut | 3.02e-12 | 3 |
intestinal epithelial cell | 2.76e-11 | 9 |
epithelial cell of alimentary canal | 2.76e-11 | 9 |
epithelial cell | 3.26e-09 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.12e-34 | 31 |
mucosa | 2.44e-25 | 15 |
gastrointestinal system | 3.78e-24 | 47 |
intestinal mucosa | 4.57e-24 | 13 |
wall of intestine | 4.57e-24 | 13 |
gastrointestinal system mucosa | 4.57e-24 | 13 |
small intestine | 6.86e-16 | 4 |
organ component layer | 3.18e-15 | 24 |
ileal mucosa | 2.12e-12 | 3 |
ileum | 2.12e-12 | 3 |
mucosa of small intestine | 2.12e-12 | 3 |
wall of small intestine | 2.12e-12 | 3 |
epithelium of mucosa | 2.76e-11 | 9 |
gastrointestinal system epithelium | 2.76e-11 | 9 |
intestinal epithelium | 2.76e-11 | 9 |
simple columnar epithelium | 3.46e-09 | 11 |
digestive system | 5.41e-09 | 116 |
digestive tract | 5.41e-09 | 116 |
primitive gut | 5.41e-09 | 116 |
colon | 7.21e-09 | 2 |
large intestine | 7.21e-09 | 2 |
endoderm-derived structure | 8.78e-09 | 118 |
endoderm | 8.78e-09 | 118 |
presumptive endoderm | 8.78e-09 | 118 |
subdivision of digestive tract | 4.58e-08 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.