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FFCP PHASE1:Mm9::chr3:105604217..105604233,-: Difference between revisions

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{{FFCP
{{FFCP|EntrezGene=109905|HGNC=|MCL_coexpression_id=1162|UniProt=P62835|association_with_transcript=14bp_to_ENSMUST00000090678_5end|description=CAGE_peak_2_at_Rap1a_5end|id=chr3:105604217..105604233,-|ontology_enrichment_celltype=CL:0000838!2.24e-07!12;CL:0000084!7.72e-07!11;CL:0000827!7.72e-07!11|ontology_enrichment_celltype_v019_2=CL:0000838,2.24e-07,12;CL:0000084,7.72e-07,11;CL:0000827,7.72e-07,11|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003104!2.78e-13!131;UBERON:0009142!2.78e-13!131;UBERON:0000077!4.81e-13!97;UBERON:0001041!7.45e-13!92;UBERON:0005057!1.53e-10!51;UBERON:0002405!3.05e-10!70;UBERON:0001007!8.23e-10!128;UBERON:0001555!8.23e-10!128;UBERON:0007026!8.23e-10!128;UBERON:0004921!1.07e-09!126;UBERON:0004185!1.07e-09!126;UBERON:0004119!1.63e-09!130;UBERON:0000925!1.63e-09!130;UBERON:0006595!1.63e-09!130;UBERON:0000926!3.57e-08!193;UBERON:0004120!3.57e-08!193;UBERON:0006603!3.57e-08!193;UBERON:0004177!4.03e-08!29;UBERON:0005911!1.04e-07!69;UBERON:0002193!2.19e-07!48;UBERON:0000949!6.92e-07!72;UBERON:0002390!6.99e-07!45;UBERON:0003061!6.99e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0001041,2.41e-11,80;UBERON:0001007,2.81e-08,116;UBERON:0001555,2.81e-08,116;UBERON:0007026,2.81e-08,116;UBERON:0004921,3.53e-08,114;UBERON:0004177,4.03e-08,29;UBERON:0005057,4.03e-08,29;UBERON:0004119,5.36e-08,118;UBERON:0000925,5.36e-08,118;UBERON:0006595,5.36e-08,118;UBERON:0000077,8.07e-08,35;UBERON:0005911,1.04e-07,69;UBERON:0002193,2.19e-07,48;UBERON:0002405,2.19e-07,48;UBERON:0000949,6.92e-07,72;UBERON:0002390,6.99e-07,45;UBERON:0003061,6.99e-07,45|phase1_expression=9.92922852049723,20.5895490507223,25.0249581664245,7.86406949397758,8.01433167914156,10.7442734023609,6.07392865548367,34.8632973292256,76.87064229481,66.4743254754462,42.2908381516997,38.1310919997708,36.9793576651404,30.3348796393921,21.6521345180181,29.5613890389146,44.7719602002014,37.5399976776303,37.8435836751839,33.5267824920444,12.4163203620562,42.5958180651798,33.4335730097837,17.4391740844813,17.4351053611049,17.8011908875656,18.9535278309993,15.0829862880122,16.5320374927045,20.4144405105544,18.4036323843903,1.27006134691926,4.30545351309199,0,5.19932915552294,4.3221007793208,5.71674197534634,47.7126059040075,61.7254922173802,57.064088093144,47.6467505305122,48.4962294320496,62.6308355410188,5.66535680890098,4.25783111121961,7.52541683862894,3.12956537739216,1.96222640742402,3.51497892375155,6.02732687130279,3.07970127575798,0,41.9456515144341,45.6978149467147,25.5431287348273,10.5476368774738,10.3152038377952,11.8604581223812,4.24864567805155,1.05798195854407,0.633831403506179,2.03306719241479,0.889294796111139,4.49949858640699,2.96659908770092,9.2362414942993,2.09720077362883,5.37905627450176,4.66603255388149,3.64516033495565,4.83747411108179,12.2829923293636,11.0434270475807,3.91970557487853,3.25874601462004,2.75765635983006,16.5173821499083,21.4514727983115,17.5111447912118,3.69281605644543,6.95306091378313,3.64639359389732,15.355064945076,14.069065250792,18.6413862287708,5.89257170947335,11.6744778255264,7.08317894136142,10.298762293313,18.3638891059489,16.232411367294,22.371020801516,8.83962733820076,14.5719861742211,12.9955283489534,13.8888335000174,17.9768857768642,10.9075406449957,7.79358013808606,5.3000936176551,21.1265129665021,1.28326477414318,2.54805239706646,7.11066703153331,4.76280290224671,3.80039798212648,4.04419556011827,17.4701335970162,71.9847316539137,22.7116472769182,13.1848848342263,14.3098774806706,18.4492397804847,26.9793526589194,18.1086608988985,27.1439837272099,7.16865406429684,13.158541479712,33.6152009740952,19.5737888436365,33.5679108059798,28.1227646818429,14.9113408974498,9.36898550436951,9.21565509979202,14.3055950916811,22.7648736561249,32.9946502046374,24.9057645063207,12.5824137100051,12.8100168789215,7.91622418311046,10.4294592115366,8.95004100656157,12.6750707181332,20.766881672673,11.8133662066367,27.4939405048306,8.59257378674494,47.9807431421161,8.58794923553845,10.5754968039398,9.36323074987816,11.4535661555143,10.2735113718505,10.7615525039274,11.1505052226077,15.5222022443409,4.74249584452253,6.80781888604149,7.2139960907219,8.98702502953057,7.78532297831674,13.5818344943645,13.3758388665163,12.1410902759281,32.3018066164088,28.3082697826187,24.1538974486254,10.1491628542396,9.14651633926275,13.8647787324981,11.1270025725049,11.8058539048442,14.9639099500757,15.1147064087765,10.4626626545851,15.7633212195679,15.9623054416076,22.8192775069942,22.8614042919313,19.7369983024199,26.5655639502171,23.4861232830651,12.1968170167194,9.2614151141356,11.2342386214491,13.4869788998408,8.53153002140936,8.59275685883622,12.5001437482431,15.7313149206207,17.123109376055,13.3157938278791,9.96511029243474,20.2579714310533,13.5721012752146,24.4716460610616,16.5719474051252,15.2799299471218,16.4264917904768,17.5244320463843,3.60369011810855,12.6815848996799,16.9061603509621,12.8300336542548,14.3524840504043,14.4479788974056,14.1649843158336,12.39925243028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|EntrezGene=109905
|HGNC=
|MCL_coexpression_id=1162
|UniProt=P62835
|association_with_transcript=14bp_to_ENSMUST00000090678_5end
|description=CAGE_peak_2_at_Rap1a_5end
|id=chr3:105604217..105604233,-
|ontology_enrichment_celltype=CL:0000838!2.24e-07!12;CL:0000084!7.72e-07!11;CL:0000827!7.72e-07!11
|ontology_enrichment_celltype_v019_2=CL:0000838,2.24e-07,12;CL:0000084,7.72e-07,11;CL:0000827,7.72e-07,11
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0003104!2.78e-13!131;UBERON:0009142!2.78e-13!131;UBERON:0000077!4.81e-13!97;UBERON:0001041!7.45e-13!92;UBERON:0005057!1.53e-10!51;UBERON:0002405!3.05e-10!70;UBERON:0001007!8.23e-10!128;UBERON:0001555!8.23e-10!128;UBERON:0007026!8.23e-10!128;UBERON:0004921!1.07e-09!126;UBERON:0004185!1.07e-09!126;UBERON:0004119!1.63e-09!130;UBERON:0000925!1.63e-09!130;UBERON:0006595!1.63e-09!130;UBERON:0000926!3.57e-08!193;UBERON:0004120!3.57e-08!193;UBERON:0006603!3.57e-08!193;UBERON:0004177!4.03e-08!29;UBERON:0005911!1.04e-07!69;UBERON:0002193!2.19e-07!48;UBERON:0000949!6.92e-07!72;UBERON:0002390!6.99e-07!45;UBERON:0003061!6.99e-07!45
|ontology_enrichment_uberon_v019_2=UBERON:0001041,2.41e-11,80;UBERON:0001007,2.81e-08,116;UBERON:0001555,2.81e-08,116;UBERON:0007026,2.81e-08,116;UBERON:0004921,3.53e-08,114;UBERON:0004177,4.03e-08,29;UBERON:0005057,4.03e-08,29;UBERON:0004119,5.36e-08,118;UBERON:0000925,5.36e-08,118;UBERON:0006595,5.36e-08,118;UBERON:0000077,8.07e-08,35;UBERON:0005911,1.04e-07,69;UBERON:0002193,2.19e-07,48;UBERON:0002405,2.19e-07,48;UBERON:0000949,6.92e-07,72;UBERON:0002390,6.99e-07,45;UBERON:0003061,6.99e-07,45
|phase1_expression=9.92922852049723,20.5895490507223,25.0249581664245,7.86406949397758,8.01433167914156,10.7442734023609,6.07392865548367,34.8632973292256,76.87064229481,66.4743254754462,42.2908381516997,38.1310919997708,36.9793576651404,30.3348796393921,21.6521345180181,29.5613890389146,44.7719602002014,37.5399976776303,37.8435836751839,33.5267824920444,12.4163203620562,42.5958180651798,33.4335730097837,17.4391740844813,17.4351053611049,17.8011908875656,18.9535278309993,15.0829862880122,16.5320374927045,20.4144405105544,18.4036323843903,1.27006134691926,4.30545351309199,0,5.19932915552294,4.3221007793208,5.71674197534634,47.7126059040075,61.7254922173802,57.064088093144,47.6467505305122,48.4962294320496,62.6308355410188,5.66535680890098,4.25783111121961,7.52541683862894,3.12956537739216,1.96222640742402,3.51497892375155,6.02732687130279,3.07970127575798,0,41.9456515144341,45.6978149467147,25.5431287348273,10.5476368774738,10.3152038377952,11.8604581223812,4.24864567805155,1.05798195854407,0.633831403506179,2.03306719241479,0.889294796111139,4.49949858640699,2.96659908770092,9.2362414942993,2.09720077362883,5.37905627450176,4.66603255388149,3.64516033495565,4.83747411108179,12.2829923293636,11.0434270475807,3.91970557487853,3.25874601462004,2.75765635983006,16.5173821499083,21.4514727983115,17.5111447912118,3.69281605644543,6.95306091378313,3.64639359389732,15.355064945076,14.069065250792,18.6413862287708,5.89257170947335,11.6744778255264,7.08317894136142,10.298762293313,18.3638891059489,16.232411367294,22.371020801516,8.83962733820076,14.5719861742211,12.9955283489534,13.8888335000174,17.9768857768642,10.9075406449957,7.79358013808606,5.3000936176551,21.1265129665021,1.28326477414318,2.54805239706646,7.11066703153331,4.76280290224671,3.80039798212648,4.04419556011827,17.4701335970162,71.9847316539137,22.7116472769182,13.1848848342263,14.3098774806706,18.4492397804847,26.9793526589194,18.1086608988985,27.1439837272099,7.16865406429684,13.158541479712,33.6152009740952,19.5737888436365,33.5679108059798,28.1227646818429,14.9113408974498,9.36898550436951,9.21565509979202,14.3055950916811,22.7648736561249,32.9946502046374,24.9057645063207,12.5824137100051,12.8100168789215,7.91622418311046,10.4294592115366,8.95004100656157,12.6750707181332,20.766881672673,11.8133662066367,27.4939405048306,8.59257378674494,47.9807431421161,8.58794923553845,10.5754968039398,9.36323074987816,11.4535661555143,10.2735113718505,10.7615525039274,11.1505052226077,15.5222022443409,4.74249584452253,6.80781888604149,7.2139960907219,8.98702502953057,7.78532297831674,13.5818344943645,13.3758388665163,12.1410902759281,32.3018066164088,28.3082697826187,24.1538974486254,10.1491628542396,9.14651633926275,13.8647787324981,11.1270025725049,11.8058539048442,14.9639099500757,15.1147064087765,10.4626626545851,15.7633212195679,15.9623054416076,22.8192775069942,22.8614042919313,19.7369983024199,26.5655639502171,23.4861232830651,12.1968170167194,9.2614151141356,11.2342386214491,13.4869788998408,8.53153002140936,8.59275685883622,12.5001437482431,15.7313149206207,17.123109376055,13.3157938278791,9.96511029243474,20.2579714310533,13.5721012752146,24.4716460610616,16.5719474051252,15.2799299471218,16.4264917904768,17.5244320463843,3.60369011810855,12.6815848996799,16.9061603509621,12.8300336542548,14.3524840504043,14.4479788974056,14.1649843158336,12.3992524302866,18.0548537017581,15.9182341459123,22.2339470315362,19.6877224744991,21.6214894624523,25.6342808118733,23.7346342024548,25.5647789337562,29.7912246584261,20.7141218964584,24.1581487894803,24.9850886001154,46.0058260887535,32.3762624471598,22.4667124642484,22.4795201372929,22.6040741037609,20.2626278972614,38.6134167448204,10.4220276473767,11.0816183980578,11.2031756611624,13.6120344007331,13.2329943379034,19.0434912708811,26.9284434043762,29.3201368037515,34.9914209645064,32.5287728061274,43.9153683438178,41.7897656115467,40.2124382856602,10.5553898757491,11.4220193601929,23.1129208318947,18.2118252561123,21.6743296483519,30.8266735737494,6.22952792431367,29.5390984829116,25.5561657727168,19.5219372148319,24.9891141370047,43.2533524294119,43.4457414460669,44.4430153338467,34.408909642366,22.2114452012597,27.6701444562566,18.6366363524648,14.4778886912434,3.91744328067962,13.1938437076397,11.8778488540226,35.84118735179,13.352934988524,20.2556783166383,26.9705264050934,8.26845300066164,28.2840336108413,21.4495483329624,19.2672876623078,22.4593348382374,20.542389265828,18.9753495434998,22.6898195146011,10.5536277783674,8.8229936075342,4.01011919726539,8.57348140126369,8.33499098118686,10.7021290561242,9.70839221552514,3.34911444026059,12.9069439435041,12.0744280392378,51.1625883487512,10.8824926941377,12.2712964288888,14.5354149076856,14.5634259683826,13.1312719796049,19.5292160542,31.7077266437972,40.1546569874954,17.5428837768739,21.4825651748866,42.5712712830602,33.2166973362091,40.722514830761,25.836721359066,25.4711643229058,29.7129943679511,33.413471630529,6.16855187483214,17.2821547057821,18.6849239621716,22.5815359695626,17.9057302271866,23.7361249637284,25.5399178191288,28.5313976762592,18.2757112341428,15.5334828271731,5.6369293868419,10.4661582230785,7.94200754194069,9.91701060554643,8.65370817300798,9.2925869019928,8.56707842114004,13.4110516389269,9.01790362061113,10.6297013163443,9.21696020025169,34.1292010278433,10.9471616256689,16.3310421892075,29.2321851700039,31.6877251331442,33.5771489580338,37.5009802502303,40.9099990273579,38.7711167800887,36.3506467744349,42.6494763128835,42.101804479573,47.3362260870421,46.7507608726276,17.9117003056017,4.88369097422942,3.40912655116008,3.8613461763738,37.0924020541806,18.580565069667,16.8499494325884,10.9327873330324,36.6147635945815,10.7302850097243,11.5081309126794,12.6037012956667,6.35856774671644,4.7955776383945,4.5323633843382,4.05013500139084,4.05289082901798,4.53142408984205,4.65984280576638,9.13328658740755,12.768795948833,8.36594668195257,14.1001895899611,13.4152424081909,10.1113929647508,14.0015438515018,16.4828045791115,12.8367683836726,12.3821633764261,10.3926512954998,17.5422497489051,14.2335091354221,12.5489298713544,15.0480928663707,14.2888107384922,14.9490780468864,16.5901929598786,17.3076078337389,18.1054671765309,10.9718160763333,15.262919329703,18.598022815891,14.3892952466005,13.5517507798076,15.2306294205018,15.0000937755674,17.3626009548976,15.75327720612,20.2011217796786,14.9480122836459,12.9040871911988,11.0492381655816,13.1696315008071,13.1176495467176,5.74564329257276,13.1001700729429,12.8922632428979,17.9811032144713,19.6326363016369,29.9109507950344
|short_description=p2@Rap1a
}}

Revision as of 01:07, 14 September 2013

Short description:p2@Rap1a
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_2_at_Rap1a_5end
Coexpression cluster:MCL_coexpression_mm9:1162
Association with transcript: 14bp_to_ENSMUST00000090678_5end
EntrezGene:Rap1a
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression

Sample

p2@Rap1a

Atoh1+ Inner ear hair cells - organ of corti, pool1.CNhs12533.12158-128G79.93
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13242.11850-124I520.59
CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13233.11851-124I625.02
CD326+ enterocyte, pool1.CNhs13542.11848-124I37.86
CD326+ enterocyte, pool2.CNhs13197.11849-124I48.01
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool1.CNhs13236.11852-124I710.74
CD326++ enterocyte isolated from mice, treated with RANKL, day03, pool2.CNhs13210.11853-124I86.07
CD4+CD25+ regulatory T cells, pool2 (Balb_cAJcl).CNhs13221.11818-124E934.86
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool1 (C57BL_6J).CNhs13219.11816-124E776.87
CD4+CD25-CD44- naive conventional T cells, PMA and ionomycin stimulation, 02hr, pool2 (Balb_cAJcl).CNhs13226.11820-124F266.47
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool1 (C57BL_6J).CNhs13218.11815-124E642.29
CD4+CD25-CD44- naive conventional T cells, antiCD3_CD28 stimulation, 06hr, pool2 (Balb_cAJcl).CNhs13225.11819-124F138.13
CD4+CD25-CD44- naive conventional T cells, pool1 (C57BL_6J).CNhs13217.11813-124E436.98
CD4+CD25-CD44- naive conventional T cells, pool2 (Balb_cAJcl).CNhs13220.11817-124E830.33
CD41+ megakaryocyte cancer, donor1.CNhs13079.11774-124A121.65
CD41+ megakaryocyte cancer, donor2.CNhs13213.11776-124A329.56
CD41+ megakaryocyte cancer, donor3.CNhs13506.11778-124A544.77
CD41+ megakaryocyte control, donor1.CNhs13212.11775-124A237.54
CD41+ megakaryocyte control, donor2.CNhs13214.11777-124A437.84
CD41+ megakaryocyte control, donor3.CNhs13201.11779-124A633.53
Clontech Mouse Universal Reference Total RNA, pool1.CNhs10609.10001-101A312.42
EBF KO HPCs induced to T cell, 00hr00min, biol_rep1.CNhs11058.12972-138H242.60
EBF KO HPCs induced to T cell, 00hr00min, biol_rep2.CNhs12980.12988-138I933.43
Follicle Associated Epithelium, pool2.CNhs13211.10262-104D117.44
Follicle Associated Epithelium, pool3.CNhs13200.10263-104D217.44
GP2+ M cell, pool1.CNhs13228.11845-124H917.80
GP2+ M cell, pool2.CNhs13231.11846-124I118.95
GP2+ M cell, pool3.CNhs13240.11847-124I215.08
Ileum epithelium, pool1.CNhs13199.10252-104B916.53
Ileum epithelium, pool2.CNhs13232.10253-104C120.41
Ileum epithelium, treated with RANKL, day03, pool3.CNhs13234.10260-104C818.40
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep1.CNhs12449.13063-139I31.27
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2.CNhs12668.13129-140G64.31
J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep3.CNhs12770.13195-141E90.00
Lgr5 positive intestinal stem cells, pool1.CNhs12555.12228-129F55.20
Lgr5 positive intestinal stem cells, pool2.CNhs12556.12229-129F64.32
Lgr5 positive intestinal stem cells, pool3.CNhs12557.12230-129F75.72
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor1 (10,11,12 3LL).CNhs12539.12159-128G847.71
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor2 (0127 3LL).CNhs12198.12161-128H161.73
MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL).CNhs12542.12163-128H357.06
MC1+Gr1+ myeloid-derived suppressor cells control, donor1 (4,5,6PBS).CNhs12540.12160-128G947.65
MC1+Gr1+ myeloid-derived suppressor cells control, donor2 (0127 PBS).CNhs12541.12162-128H248.50
MC1+Gr1+ myeloid-derived suppressor cells control, donor3 (0128 PBS).CNhs12543.12164-128H462.63
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep1.CNhs11055.11484-119D85.67
Mouse Aortic Smooth Muscle cells - differentiated, biol_rep2.CNhs11056.11485-119D94.26
Mouse Aortic Smooth Muscle cells, donor1.CNhs11297.11299-117B37.53
Mouse Astrocytes - cerebellar, donor1.CNhs13077.11708-123B73.13
Mouse Astrocytes - cerebellar, donor2.CNhs12076.11550-120C21.96
Mouse Astrocytes - hippocampus, donor1.CNhs12129.11709-123B83.51
Mouse Astrocytes - hippocampus, donor2.CNhs12077.11551-120C36.03
Mouse Astrocytes, donor2.CNhs12078.11552-120C43.08
Mouse Astrocytes, donor3.CNhs12107.11633-122C40.00
Mouse CD19+ B Cells, donor1.CNhs13531.11856-125A241.95
Mouse CD4+ T Cells, donor1.CNhs13509.11854-124I945.70
Mouse CD8+ T Cells, donor1.CNhs13511.11855-125A125.54
Mouse Cardiac Myocytes, donor1.CNhs12355.11711-123C110.55
Mouse Cardiac Myocytes, donor2.CNhs12356.11729-123E110.32
Mouse Cardiac Myocytes, donor3.CNhs12353.11634-122C511.86
Mouse Granule cells, donor1.CNhs12131.11713-123C34.25
Mouse Granule cells, donor2.CNhs12357.11731-123E31.06
Mouse Granule cells, donor3.CNhs12108.11636-122C70.63
Mouse Meningeal cells, donor1.CNhs12132.11716-123C62.03
Mouse Meningeal cells, donor3.CNhs12109.11639-122D10.89
Mouse Mesenchymal stem cells - bone marrow derived, donor1.CNhs12628.11717-123C74.50
Mouse Mesenchymal stem cells - bone marrow derived, donor2.CNhs12633.11735-123E72.97
Mouse Mesenchymal stem cells - bone marrow derived, donor3.CNhs12616.11640-122D29.24
Mouse Microglia, donor1.CNhs12629.11718-123C82.10
Mouse Microglia, donor2.CNhs12634.11736-123E85.38
Mouse Neurons - cortical, donor1.CNhs12025.11724-123D54.67
Mouse Neurons - cortical, donor2.CNhs11947.11742-123F53.65
Mouse Neurons - cortical, donor3.CNhs12112.11647-122D94.84
Mouse Neurons - dorsal spinal cord, donor2.CNhs12635.11738-123F112.28
Mouse Neurons - dorsal spinal cord, donor3.CNhs12618.11643-122D511.04
Mouse Neurons - hippocampal, donor1.CNhs12133.11721-123D23.92
Mouse Neurons - hippocampal, donor2.CNhs12359.11739-123F23.26
Mouse Neurons - hippocampal, donor3.CNhs12110.11644-122D62.76
Mouse Neurons - raphe, donor1.CNhs12631.11722-123D316.52
Mouse Neurons - raphe, donor2.CNhs12636.11740-123F321.45
Mouse Neurons - raphe, donor3.CNhs12619.11645-122D717.51
Mouse Neurons - striatal, donor1.CNhs12134.11723-123D43.69
Mouse Neurons - striatal, donor2.CNhs12360.11741-123F46.95
Mouse Neurons - striatal, donor3.CNhs12111.11646-122D83.65
Mouse Neurons - substantia nigra, donor4, tech_rep1.CNhs12612.11489-119E415.36
Mouse Neurons - substantia nigra, donor5.CNhs12614.11490-119E514.07
Mouse Neurons - substantia nigra, donor6.CNhs12643.11770-123I618.64
Mouse Neurons - ventral spinal cord, donor1.CNhs12632.11725-123D65.89
Mouse Neurons - ventral spinal cord, donor2.CNhs12638.11743-123F611.67
Mouse Neurons - ventral spinal cord, donor3.CNhs12113.11648-122E17.08
Mouse Schwann, donor1.CNhs12507.11728-123D910.30
Mouse Schwann, donor2.CNhs12573.11746-123F918.36
Mouse hepatic Sinusoidal Endothelial Cells, donor1.CNhs13209.11830-124G316.23
Mouse hepatic Stellate Cells (lipocyte), donor1.CNhs13196.11825-124F722.37
Mouse hepatocyte, donor1.CNhs13078.11714-123C48.84
Mouse hepatocyte, donor3.CNhs12615.11637-122C814.57
Mouse hepatocyte, donor6.CNhs13090.11822-124F413.00
Mouse hepatocyte, donor8.CNhs13091.11824-124F613.89
SABiosciences XpressRef Mouse Universal Total RNA, pool1.CNhs10611.10003-101A717.98
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep1 (000hC4).CNhs11939.12338-130I710.91
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep2 (000hC5).CNhs13275.12460-132E37.79
ST2 (Mesenchymal stem cells) cells, medium change (without induction), 00hr, biol_rep3 (000hC6).CNhs13324.12582-133I85.30
Sox2+ Supporting cells - organ of corti, pool1.CNhs12532.12157-128G621.13
TSt-4/DLL1 feeder cells, biol_rep1.CNhs13407.12971-138H11.28
TSt-4/DLL1 feeder cells, biol_rep2.CNhs13408.12987-138I82.55
TSt-4/DLL1 feeder cells, biol_rep3.CNhs13409.13003-139B67.11
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep1.CNhs13739.13367-143G14.76
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep2.CNhs13740.13368-143G23.80
Tracheal epithelial cells, differentiation to ciliated epithelial cells, 000hr, biol_rep3.CNhs13741.13369-143G34.04
Universal RNA - Mouse Normal Tissues Biochain, pool1.CNhs10613.10008-101B617.47
accessory axillary lymph node, adult.CNhs10475.1063-29H971.98
adrenal gland, adult.CNhs10508.49-24D722.71
adrenal gland, embryo E14.CNhs11038.406-44C513.18
adrenal gland, embryo E16.CNhs11004.1254-43D614.31
adrenal gland, embryo E17.CNhs11043.1263-45I118.45
adrenal gland, embryo E18.CNhs11026.1262-18F526.98
adrenal gland, neonate N00.CNhs11191.1311-23C118.11
adrenal gland, neonate N25.CNhs11223.1377-27I327.14
amnion, adult pregnant day17.5.CNhs10488.583-22A87.17
aorta, adult.CNhs10498.46-23H113.16
bone (os femoris), adult.CNhs10483.56-12G233.62
bone (os femoris), neonate N02.CNhs11227.1985-43F519.57
bone (os femoris), neonate N16.CNhs11225.1525-43A633.57
bone (os femoris), neonate N20.CNhs11195.1350-25C328.12
cecum, adult.CNhs10467.37-13H414.91
cerebellum, adult.CNhs10494.15-8B29.37
cerebellum, neonate N30.CNhs11135.1395-42I29.22
colon, adult.CNhs10468.36-18H714.31
common myeloid progenitor CMP, biol_rep1.CNhs12550.12122-128C722.76
common myeloid progenitor CMP, biol_rep2.CNhs12203.12125-128D132.99
common myeloid progenitor CMP, biol_rep3.CNhs12551.12128-128D424.91
corpora quadrigemina, adult.CNhs10501.16-22A412.58
corpus striatum, adult.CNhs10487.19-21D812.81
corpus striatum, neonate N00.CNhs11226.630-43F17.92
cortex, adult.CNhs10473.12-14D510.43
cortex, neonate N30.CNhs11107.1392-42F28.95
diencephalon, adult.CNhs10482.20-12F212.68
diencephalon, neonate N30.CNhs11201.1388-42B220.77
epididymis and seminiferous tubule, neonate N00.CNhs11218.1310-23B111.81
epididymis and seminiferous tubule, neonate N30.CNhs11199.1387-42A227.49
epididymis, adult.CNhs10490.58-23B28.59
eyeball, adult.CNhs10484.31-12G447.98
eyeball, embryo E12.CNhs11016.345-16C68.59
eyeball, embryo E14.CNhs10521.399-16E210.58
eyeball, embryo E15.CNhs10593.426-16C99.36
eyeball, embryo E17.CNhs11023.1261-18D411.45
eyeball, neonate N00.CNhs11207.633-15C610.27
eyeball, neonate N01.CNhs11140.1532-43E710.76
eyeball, neonate N02.CNhs11205.1551-44G811.15
eyeball, neonate N16.CNhs11188.777-19A215.52
forelimb, embryo E11.CNhs10596.335-25E24.74
forelimb, embryo E12.CNhs10600.359-14H26.81
forelimb, embryo E13.CNhs10589.384-1E27.21
forelimb, embryo E14.CNhs10577.413-26A88.99
forelimb, embryo E15.CNhs11007.437-20E77.79
forelimb, embryo E17.CNhs10598.1517-43C413.58
forelimb, embryo E18.CNhs11008.1520-43B513.38
gonad, embryo E13.CNhs11044.1564-45I612.14
granulocyte macrophage progenitor GMP, biol_rep1.CNhs12206.12123-128C832.30
granulocyte macrophage progenitor GMP, biol_rep2.CNhs12202.12126-128D228.31
granulocyte macrophage progenitor GMP, biol_rep3.CNhs11928.12129-128D524.15
heart, embryo E11.CNhs10586.331-24E910.15
heart, embryo E12.CNhs11015.353-12F59.15
heart, embryo E13.CNhs11013.376-3I913.86
heart, embryo E14.CNhs10597.403-26D411.13
heart, embryo E15.CNhs11017.431-16C811.81
heart, embryo E16.CNhs11021.457-17C614.96
heart, embryo E17.CNhs11025.479-18E515.11
heart, embryo E18.CNhs11030.1283-20G310.46
heart, neonate N00.CNhs11213.639-21E315.76
heart, neonate N03.CNhs11221.1349-25I215.96
heart, neonate N10.CNhs11118.749-24G122.82
heart, neonate N16.CNhs11209.782-15G122.86
heart, neonate N20.CNhs11127.821-26I619.74
heart, neonate N25.CNhs11196.1351-25D326.57
heart, neonate N30.CNhs11202.1390-42D223.49
hippocampus, adult.CNhs10478.13-16E812.20
hippocampus, neonate N00.CNhs11228.627-43G19.26
intestinal mucosa, adult.CNhs10506.860-29I311.23
intestine, adult.CNhs10496.178-9A313.49
intestine, embryo E12.CNhs11019.1251-16I58.53
intestine, embryo E13.CNhs11010.381-16D58.59
intestine, embryo E15.CNhs10602.976-16D812.50
intestine, embryo E16.CNhs10585.463-22H415.73
intestine, embryo E17.CNhs10582.482-18D317.12
intestine, embryo E18.CNhs10526.1289-20F713.32
intestine, neonate N00.CNhs11126.644-26D19.97
intestine, neonate N01.CNhs11192.1322-23E920.26
intestine, neonate N06.CNhs11102.688-20B813.57
intestine, neonate N07.CNhs11095.720-20F224.47
intestine, neonate N10.CNhs11098.755-23A516.57
intestine, neonate N20.CNhs11187.827-18D115.28
intestine, neonate N25.CNhs11121.1352-25E316.43
intestine, neonate N30.CNhs11131.1384-42G117.52
kidney, embryo E14.CNhs10606.411-4I93.60
kidney, embryo E15.CNhs10997.434-16F812.68
kidney, embryo E16.CNhs10584.464-22A516.91
kidney, embryo E17.CNhs11028.483-18I212.83
kidney, embryo E18.CNhs11001.1288-20C714.35
kidney, neonate N00.CNhs11214.646-21G714.45
kidney, neonate N10.CNhs11206.758-6D514.16
kidney, neonate N20.CNhs11113.832-19I112.40
kidney, neonate N25.CNhs11122.1353-25F318.05
kidney, neonate N30.CNhs11203.1385-42H115.92
liver, adult pregnant day01.CNhs10466.508-5B222.23
liver, embryo E12.CNhs10601.355-15F819.69
liver, embryo E13.CNhs10524.378-3H621.62
liver, embryo E14.CNhs10594.409-16E125.63
liver, embryo E15.CNhs10520.433-16D723.73
liver, embryo E16.CNhs10523.462-17F525.56
liver, embryo E17.CNhs10510.481-18A329.79
liver, embryo E18.CNhs10579.499-43G420.71
liver, neonate N00.CNhs11117.641-24F424.16
liver, neonate N03.CNhs11123.1345-25G224.99
liver, neonate N06.CNhs11101.684-20A846.01
liver, neonate N07.CNhs11103.716-20H232.38
liver, neonate N10.CNhs11115.751-24B922.47
liver, neonate N20.CNhs11220.823-25A322.48
liver, neonate N25.CNhs11198.1368-26H122.60
liver, neonate N30.CNhs11106.1382-42D120.26
lung, adult.CNhs10474.28-22B138.61
lung, embryo E12.CNhs10522.354-16G210.42
lung, embryo E14.CNhs10604.404-26F811.08
lung, embryo E15.CNhs11020.432-17C511.20
lung, embryo E16.CNhs10998.458-17B613.61
lung, embryo E17.CNhs10605.480-44A613.23
lung, embryo E18.CNhs10583.1287-20I619.04
lung, neonate N00.CNhs11224.640-42C626.93
lung, neonate N06.CNhs11212.683-20E529.32
lung, neonate N07.CNhs11111.715-19A334.99
lung, neonate N10.CNhs11219.750-23E632.53
lung, neonate N20.CNhs11109.822-18A443.92
lung, neonate N25.CNhs11119.1359-25C741.79
lung, neonate N30.CNhs11133.1394-42H240.21
macrophage, bone marrow derived, pool1.CNhs11457.3560-170A110.56
macrophage, bone marrow derived, pool2.CNhs11532.3632-171A111.42
mammary gland, adult lactating day02.CNhs10480.595-22B623.11
mammary gland, adult pregnant day19.CNhs10476.588-5H218.21
medulla oblongata, adult.CNhs10477.17-12C221.67
medulla oblongata, neonate N30.CNhs11200.1396-42A330.83
mouse fibroblast cell line: CRL-1658 NIH/3T3.CNhs11093.1830-49C76.23
muscle (biceps femoris), neonate N30.CNhs11129.1389-42C229.54
neurospheres - enteric neuron derived, biol_rep1.CNhs13087.11810-124E125.56
neurospheres - enteric neuron derived, biol_rep2.CNhs13088.11811-124E219.52
neurospheres - enteric neuron derived, biol_rep3.CNhs13089.11812-124E324.99
neurospheres - parasympathetic neuron derived, biol_rep1.CNhs13084.11807-124D743.25
neurospheres - parasympathetic neuron derived, biol_rep2.CNhs13085.11808-124D843.45
neurospheres - parasympathetic neuron derived, biol_rep3.CNhs13086.11809-124D944.44
neurospheres - sympathetic neuron derived, biol_rep1.CNhs13081.11804-124D434.41
neurospheres - sympathetic neuron derived, biol_rep2.CNhs13082.11805-124D522.21
neurospheres - sympathetic neuron derived, biol_rep3.CNhs13083.11806-124D627.67
olfactory brain, adult.CNhs10489.18-22I918.64
ovary, adult.CNhs10507.91-2I714.48
ovary, embryo E18.CNhs11040.505-44H73.92
ovary, neonate N00.CNhs11217.1299-22I413.19
oviduct, adult pregnant day01.CNhs10500.988-6G611.88
pancreas, adult.CNhs10486.34-16E435.84
pancreas, embryo E14.CNhs11012.405-44F413.35
pancreas, embryo E15.CNhs11042.1556-45F220.26
pancreas, embryo E16.CNhs11003.460-26E526.97
pancreas, embryo E17.CNhs10599.1558-45G38.27
pancreas, embryo E18.CNhs10580.1535-43I728.28
pancreas, neonate N00.CNhs11105.645-26G921.45
pancreas, neonate N01.CNhs11138.1531-43D719.27
pancreas, neonate N02.CNhs11139.1539-43D822.46
pancreas, neonate N16.CNhs11136.787-43B620.54
pancreas, neonate N25.CNhs11094.1555-45E218.98
pancreas, neonate N30.CNhs11182.1548-44H522.69
pituitary gland, adult.CNhs10493.21-1G810.55
pituitary gland, embryo E12.CNhs11018.346-16E68.82
pituitary gland, embryo E13.CNhs11009.370-44C74.01
pituitary gland, embryo E14.CNhs11037.398-44A58.57
pituitary gland, embryo E15.CNhs10592.427-16B98.33
pituitary gland, embryo E16.CNhs11036.449-43F610.70
pituitary gland, embryo E17.CNhs11039.1265-44F59.71
pituitary gland, neonate N00.CNhs11190.1308-22E93.35
placenta, adult pregnant day10.CNhs10472.539-13I712.91
placenta, adult pregnant day17.CNhs10464.577-18G312.07
prostate, adult.CNhs10470.859-1F851.16
skin, adult.CNhs10492.30-1C310.88
skin, neonate N00.CNhs11124.650-25G412.27
skin, neonate N03.CNhs11215.662-22H314.54
skin, neonate N06.CNhs11097.693-20I514.56
skin, neonate N10.CNhs11108.762-6C413.13
small intestine, neonate N16.CNhs11114.790-21I119.53
spinal cord, adult.CNhs10505.24-13C931.71
spleen, adult.CNhs10465.25-2G240.15
spleen, embryo E16.CNhs11035.461-43C117.54
spleen, embryo E18.CNhs11011.1271-21F221.48
spleen, neonate N10.CNhs11116.752-24D142.57
spleen, neonate N20.CNhs11112.824-19H133.22
spleen, neonate N25.CNhs11099.1354-25G340.72
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep1.CNhs12534.12121-128C625.84
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep2.CNhs12535.12124-128C925.47
stem cell (cKit+ Sca1- lineage-) KSL, biol_rep3.CNhs12536.12127-128D329.71
stomach, adult.CNhs10503.33-1H633.41
stomach, embryo E12.CNhs10588.356-43E36.17
stomach, embryo E15.CNhs10603.1252-16G817.28
stomach, embryo E16.CNhs11022.459-17D418.68
stomach, embryo E17.CNhs11006.1035-18D522.58
stomach, embryo E18.CNhs10999.1286-20C617.91
stomach, neonate N03.CNhs11193.1340-24B823.74
stomach, neonate N07.CNhs11210.718-18A925.54
stomach, neonate N25.CNhs11104.1355-25E428.53
stomach, neonate N30.CNhs11134.1386-42I118.28
submandibular gland, adult.CNhs10469.59-29C115.53
testis, adult.CNhs10504.57-7G55.64
testis, embryo E13.CNhs11031.389-23F510.47
testis, embryo E15.CNhs11034.443-27C57.94
testis, embryo E16.CNhs11033.470-26G59.92
testis, embryo E17.CNhs11029.486-18I58.65
testis, embryo E18.CNhs11027.503-18G59.29
testis, neonate N00.CNhs11189.1300-22B78.57
testis, neonate N07.CNhs11222.726-26I413.41
testis, neonate N10.CNhs11204.763-44D99.02
testis, neonate N20.CNhs11110.839-18H310.63
testis, neonate N30.CNhs11130.1391-42E29.22
thymus, adult.CNhs10471.38-12B534.13
thymus, embryo E14.CNhs11041.402-44I410.95
thymus, embryo E15.CNhs11005.430-45I216.33
thymus, embryo E16.CNhs11002.456-26C529.23
thymus, embryo E17.CNhs10581.478-18C131.69
thymus, embryo E18.CNhs10595.1273-19G433.58
thymus, neonate N02.CNhs11181.1541-43F837.50
thymus, neonate N03.CNhs11137.2104-43C740.91
thymus, neonate N06.CNhs11197.681-26C438.77
thymus, neonate N07.CNhs11211.713-19D336.35
thymus, neonate N10.CNhs11194.748-24E442.65
thymus, neonate N20.CNhs11186.820-7A242.10
thymus, neonate N25.CNhs11125.1362-25G747.34
thymus, neonate N30.CNhs11132.1393-42G246.75
tongue, adult.CNhs10499.32-1B417.91
trophoblast stem cell line B1 differentiation, day00, biol_rep1.CNhs13526.13297-142H34.88
trophoblast stem cell line R1AB differentiation, day00, biol_rep1.CNhs13481.13283-142F73.41
trophoblast stem cell line Rybp differentiation, day00, biol_rep1.CNhs13519.13290-142G53.86
urinary bladder, adult.CNhs10481.879-12E437.09
uterus, adult pregnant day19.CNhs10497.590-15F518.58
uterus, adult.CNhs10509.92-27E516.85
vagina, adult.CNhs10502.89-27D510.93
vesicular gland, adult.CNhs10491.51-27F836.61
visual cortex - wildtype, neonate N15, donor1.CNhs13031.10235-104A110.73
visual cortex - wildtype, neonate N15, donor2.CNhs13032.10236-104A211.51
visual cortex - wildtype, neonate N15, donor3.CNhs13033.10237-104A312.60
visual cortex - wildtype, neonate N15, donor5.CNhs13820.10349-105D76.36
visual cortex - wildtype, neonate N30, donor1.CNhs13034.10238-104A44.80
visual cortex - wildtype, neonate N30, donor2.CNhs13035.10239-104A54.53
visual cortex - wildtype, neonate N30, donor3.CNhs13036.10240-104A64.05
visual cortex - wildtype, neonate N60-70, donor1.CNhs13037.10241-104A74.05
visual cortex - wildtype, neonate N60-70, donor2.CNhs13038.10242-104A84.53
visual cortex - wildtype, neonate N60-70, donor3.CNhs13039.10243-104A94.66
whole body, embryo E11.CNhs11014.324-5I89.13
whole body, embryo E12.CNhs10587.857-27C912.77
whole body, embryo E13.CNhs10512.372-23H28.37
whole body, embryo E14.5.CNhs10578.420-27D214.10
whole body, embryo E14.CNhs10519.395-14B113.42
whole body, embryo E16.CNhs10514.453-14F210.11
whole body, embryo E17.5, pool1 (internal control).CNhs10479.3139-67G514.00
whole body, embryo E17.5, pool1 (internal control).CNhs10495.3139-67G516.48
whole body, embryo E17.5, pool1 (internal control).CNhs10511.3139-67G512.84
whole body, embryo E17.5, pool1 (internal control).CNhs10527.3139-67G512.38
whole body, embryo E17.5, pool1 (internal control).CNhs10591.3139-67G510.39
whole body, embryo E17.5, pool1 (internal control).CNhs10607.3139-67G517.54
whole body, embryo E17.5, pool1 (internal control).CNhs10623.3139-67G514.23
whole body, embryo E17.5, pool1 (internal control).CNhs10639.3139-67G512.55
whole body, embryo E17.5, pool1 (internal control).CNhs10655.3139-67G515.05
whole body, embryo E17.5, pool1 (internal control).CNhs10725.3139-67G514.29
whole body, embryo E17.5, pool1 (internal control).CNhs10749.3139-67G514.95
whole body, embryo E17.5, pool1 (internal control).CNhs10840.3139-67G516.59
whole body, embryo E17.5, pool1 (internal control).CNhs10856.3139-67G517.31
whole body, embryo E17.5, pool1 (internal control).CNhs10880.3139-67G518.11
whole body, embryo E17.5, pool1 (internal control).CNhs11000.3139-67G510.97
whole body, embryo E17.5, pool1 (internal control).CNhs11024.3139-67G515.26
whole body, embryo E17.5, pool1 (internal control).CNhs11032.3139-67G518.60
whole body, embryo E17.5, pool1 (internal control).CNhs11048.3139-67G514.39
whole body, embryo E17.5, pool1 (internal control).CNhs11072.3139-67G513.55
whole body, embryo E17.5, pool1 (internal control).CNhs11080.3139-67G515.23
whole body, embryo E17.5, pool1 (internal control).CNhs11096.3139-67G515.00
whole body, embryo E17.5, pool1 (internal control).CNhs11120.3139-67G517.36
whole body, embryo E17.5, pool1 (internal control).CNhs11128.3139-67G515.75
whole body, embryo E17.5, pool1 (internal control).CNhs11184.3139-67G520.20
whole body, embryo E17.5, pool1 (internal control).CNhs11208.3139-67G514.95
whole body, embryo E17.5, pool1 (internal control).CNhs11216.3139-67G512.90
whole body, embryo E17.5, pool1 (internal control).CNhs11246.3139-67G511.05
whole body, embryo E17.5, pool1 (internal control).CNhs11278.3139-67G513.17
whole body, embryo E17.5.CNhs10513.490-9F913.12
whole body, embryo E17.CNhs10517.475-3I55.75
whole body, embryo E18.CNhs10516.493-3B313.10
whole body, neonate N00.CNhs10525.657-19C212.89
whole body, neonate N01.CNhs10576.659-23C617.98
whole body, neonate N06.CNhs10515.692-21D119.63
whole body, neonate N10.CNhs10518.761-6B429.91





  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Cell type
Ontology termp-valuen
lymphoid lineage restricted progenitor cell2.24e-0712
T cell7.72e-0711
pro-T cell7.72e-0711

Uber anatomy
Ontology termp-valuen
foregut2.41e-1180
digestive system2.81e-08116
digestive tract2.81e-08116
primitive gut2.81e-08116
subdivision of digestive tract3.53e-08114
hemopoietic organ4.03e-0829
immune organ4.03e-0829
endoderm-derived structure5.36e-08118
endoderm5.36e-08118
presumptive endoderm5.36e-08118
mixed endoderm/mesoderm-derived structure8.07e-0835
endo-epithelium1.04e-0769
hemolymphoid system2.19e-0748
immune system2.19e-0748
endocrine system6.92e-0772
hematopoietic system6.99e-0745
blood island6.99e-0745







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