FFCP PHASE1:Hg19::chr7:45952985..45952996,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=3486|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=5472|TSSclassifier=N|UniProt=|association_with_transcript=-309bp_to_S56205_5end|coexpression_cluster_id=C223|description=CAGE_peak_19_at_IGFBP3_5end|id=chr7:45952985..45952996,-|ontology_enrichment_celltype=CL:0000055!2.95e-14!180;CL:0000057!7.55e-14!75;CL:0002620!9.45e-13!23;CL:0000153!3.27e-08!9;CL:0000447!3.27e-08!9;CL:0002595!7.08e-08!5;CL:0002334!9.20e-08!12;CL:0000667!5.13e-07!6;CL:0000058!5.13e-07!6;CL:0000138!5.13e-07!6|ontology_enrichment_celltype_v019=CL:0002620;1.63e-17;23!CL:0000138;4.94e-13;6!CL:0000153;5.26e-13;9!CL:0000447;5.26e-13;9!CL:0000327;1.35e-10;15!CL:0000499;2.65e-09;28!CL:0002595;1.34e-08;5!CL:0000135;4.73e-07;3!CL:0000388;4.73e-07;3!CL:0002615;9.59e-07;3|ontology_enrichment_celltype_v019_2=CL:0002620,1.53e-17,23;CL:0000057,1.76e-14,76;CL:0000153,4.67e-13,9;CL:0000447,4.67e-13,9;CL:0000058,4.88e-13,6;CL:0000138,4.88e-13,6;CL:0000327,1.06e-10,15;CL:0000499,2.16e-09,28;CL:0002595,1.36e-08,5;CL:0000135,4.33e-07,3;CL:0000388,4.33e-07,3;CL:0002615,8.06e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:17!4.63e-08!5;DOID:450!4.63e-08!5;DOID:66!4.63e-08!5;DOID:423!4.63e-08!5;DOID:0080000!4.63e-08!5;DOID:11722!4.63e-08!5|ontology_enrichment_disease_v019=DOID:17;2.56e-14;5!DOID:450;2.56e-14;5!DOID:66;2.56e-14;5!DOID:423;2.56e-14;5!DOID:0080000;2.56e-14;5!DOID:11722;2.56e-14;5|ontology_enrichment_disease_v019_2=DOID:17,3.28e-14,5;DOID:450,3.28e-14,5;DOID:66,3.28e-14,5;DOID:423,3.28e-14,5;DOID:0080000,3.28e-14,5;DOID:11722,3.28e-14,5|ontology_enrichment_uberon=UBERON:0003688!5.33e-09!6;UBERON:0002358!5.33e-09!6;UBERON:0003684!5.33e-09!6;UBERON:0001178!5.33e-09!6;UBERON:0004457!2.11e-08!12;UBERON:0000042!2.11e-08!12;UBERON:0005631!2.63e-08!14;UBERON:0000158!2.63e-08!14;UBERON:0003834!7.08e-08!5;UBERON:0001533!7.08e-08!5;UBERON:0002199!1.80e-07!45;UBERON:0002416!1.80e-07!45;UBERON:0002097!3.41e-07!40;UBERON:0003124!8.46e-07!7|ontology_enrichment_uberon_v019=UBERON:0004457;7.16e-12;9!UBERON:0000042;7.16e-12;9!UBERON:0003688;1.18e-11;6!UBERON:0002358;1.18e-11;6!UBERON:0003684;1.18e-11;6!UBERON:0001178;1.18e-11;6!UBERON:0002097;3.79e-09;41!UBERON:0003834;1.34e-08;5!UBERON:0001533;1.34e-08;5!UBERON:0002199;2.71e-07;46!UBERON:0002416;2.71e-07;46!UBERON:0007846;4.73e-07;3!UBERON:0000043;4.73e-07;3!UBERON:0007845;4.73e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.97e-12,6;UBERON:0002358,7.97e-12,6;UBERON:0003684,7.97e-12,6;UBERON:0001178,7.97e-12,6;UBERON:0002097,4.93e-11,41;UBERON:0002199,1.35e-09,46;UBERON:0002416,1.35e-09,46;UBERON:0004457,5.64e-09,12;UBERON:0000042,5.64e-09,12;UBERON:0003834,1.36e-08,5;UBERON:0001533,1.36e-08,5;UBERON:0007846,4.33e-07,3;UBERON:0000043,4.33e-07,3;UBERON:0007845,4.33e-07,3|phase1_expression=1.2717486548939,0.642301571672949,1.83240725324762,2.00146596706261,0.893922188854576,0,0,0,0.261185628199839,0.245733936501509,0,0,0,0,0,0,0.602694528023977,0,0,0,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,22.7706666002277,9.02408239144601,15.0640379719257,0.795285947051099,3.89307896242109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01304409331664,0,1.43418310374407,0,0.560677600142307,0,0.74000264525148,0,0.134710672069688,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0.30648779579902,0.300476117813194,0,1.61450672119976,1.06778694409284,2.11931901159562,3.30100205692843,0.92747276314595,0.515281080091258,4.09457083929498,0.337552664482532,1.65642908774038,2.52433774244115,2.39329736469978,0.161646056818812,3.90510551768276,2.31729825923573,0.339121184620975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,1.18157981336281,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0.531876233169741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.239624855491583,0,0,0.579125226670317,0.821905290201534,0.537182889719687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831883446123229,1.07057393278297,0.157702415033935,0.117141414992713,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0.496215615637554,0.460385919864187,1.12264037773229,1.53766979106841,1.53512174720011,0.482561763430822,0,0,0.532685175939381,0.328508624055237,0,0.348631135379878,0,0.200506470303285,0,0.459257792658427,0,0.393373244878272,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192190067365106,0,0,0.929691098594572,4.40737285562896,0,0,0,0,0.55597265731176,0.858749320451947,0,0.316379424718726,0,0,0,0,1.56989728039846,0,0,0,0,0,0.421258456238981,0,0.974853958525138,2.11300293513511,0,0,0,0.551365343546124,1.32687795048244,3.94605796728386,0,0,0.202910376962704,0,0,0,0,0.35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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=3486 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=5472 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-309bp_to_S56205_5end | |||
|coexpression_cluster_id=C223 | |||
|description=CAGE_peak_19_at_IGFBP3_5end | |||
|id=chr7:45952985..45952996,- | |||
|ontology_enrichment_celltype=CL:0000055!2.95e-14!180;CL:0000057!7.55e-14!75;CL:0002620!9.45e-13!23;CL:0000153!3.27e-08!9;CL:0000447!3.27e-08!9;CL:0002595!7.08e-08!5;CL:0002334!9.20e-08!12;CL:0000667!5.13e-07!6;CL:0000058!5.13e-07!6;CL:0000138!5.13e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.63e-17;23!CL:0000138;4.94e-13;6!CL:0000153;5.26e-13;9!CL:0000447;5.26e-13;9!CL:0000327;1.35e-10;15!CL:0000499;2.65e-09;28!CL:0002595;1.34e-08;5!CL:0000135;4.73e-07;3!CL:0000388;4.73e-07;3!CL:0002615;9.59e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,1.53e-17,23;CL:0000057,1.76e-14,76;CL:0000153,4.67e-13,9;CL:0000447,4.67e-13,9;CL:0000058,4.88e-13,6;CL:0000138,4.88e-13,6;CL:0000327,1.06e-10,15;CL:0000499,2.16e-09,28;CL:0002595,1.36e-08,5;CL:0000135,4.33e-07,3;CL:0000388,4.33e-07,3;CL:0002615,8.06e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!4.63e-08!5;DOID:450!4.63e-08!5;DOID:66!4.63e-08!5;DOID:423!4.63e-08!5;DOID:0080000!4.63e-08!5;DOID:11722!4.63e-08!5 | |||
|ontology_enrichment_disease_v019=DOID:17;2.56e-14;5!DOID:450;2.56e-14;5!DOID:66;2.56e-14;5!DOID:423;2.56e-14;5!DOID:0080000;2.56e-14;5!DOID:11722;2.56e-14;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,3.28e-14,5;DOID:450,3.28e-14,5;DOID:66,3.28e-14,5;DOID:423,3.28e-14,5;DOID:0080000,3.28e-14,5;DOID:11722,3.28e-14,5 | |||
|ontology_enrichment_uberon=UBERON:0003688!5.33e-09!6;UBERON:0002358!5.33e-09!6;UBERON:0003684!5.33e-09!6;UBERON:0001178!5.33e-09!6;UBERON:0004457!2.11e-08!12;UBERON:0000042!2.11e-08!12;UBERON:0005631!2.63e-08!14;UBERON:0000158!2.63e-08!14;UBERON:0003834!7.08e-08!5;UBERON:0001533!7.08e-08!5;UBERON:0002199!1.80e-07!45;UBERON:0002416!1.80e-07!45;UBERON:0002097!3.41e-07!40;UBERON:0003124!8.46e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;7.16e-12;9!UBERON:0000042;7.16e-12;9!UBERON:0003688;1.18e-11;6!UBERON:0002358;1.18e-11;6!UBERON:0003684;1.18e-11;6!UBERON:0001178;1.18e-11;6!UBERON:0002097;3.79e-09;41!UBERON:0003834;1.34e-08;5!UBERON:0001533;1.34e-08;5!UBERON:0002199;2.71e-07;46!UBERON:0002416;2.71e-07;46!UBERON:0007846;4.73e-07;3!UBERON:0000043;4.73e-07;3!UBERON:0007845;4.73e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,7.97e-12,6;UBERON:0002358,7.97e-12,6;UBERON:0003684,7.97e-12,6;UBERON:0001178,7.97e-12,6;UBERON:0002097,4.93e-11,41;UBERON:0002199,1.35e-09,46;UBERON:0002416,1.35e-09,46;UBERON:0004457,5.64e-09,12;UBERON:0000042,5.64e-09,12;UBERON:0003834,1.36e-08,5;UBERON:0001533,1.36e-08,5;UBERON:0007846,4.33e-07,3;UBERON:0000043,4.33e-07,3;UBERON:0007845,4.33e-07,3 | |||
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|short_description=p19@IGFBP3 | |||
}} |
Revision as of 01:25, 14 September 2013
Short description: | p19@IGFBP3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_19_at_IGFBP3_5end |
Coexpression cluster: | C223_Chondrocyte_basal_renal_Fibroblast_Smooth_spindle_Synoviocyte |
Association with transcript: | -309bp_to_S56205_5end |
EntrezGene: | IGFBP3 |
HGNC: | 5472 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 1.53e-17 | 23 |
fibroblast | 1.76e-14 | 76 |
GAG secreting cell | 4.67e-13 | 9 |
carbohydrate secreting cell | 4.67e-13 | 9 |
chondroblast | 4.88e-13 | 6 |
chondrocyte | 4.88e-13 | 6 |
extracellular matrix secreting cell | 1.06e-10 | 15 |
stromal cell | 2.16e-09 | 28 |
smooth muscle cell of the subclavian artery | 1.36e-08 | 5 |
fibrocyte | 4.33e-07 | 3 |
tendon cell | 4.33e-07 | 3 |
adipocyte of omentum tissue | 8.06e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
omentum | 7.97e-12 | 6 |
peritoneum | 7.97e-12 | 6 |
abdominal cavity | 7.97e-12 | 6 |
visceral peritoneum | 7.97e-12 | 6 |
skin of body | 4.93e-11 | 41 |
integument | 1.35e-09 | 46 |
integumental system | 1.35e-09 | 46 |
cavity lining | 5.64e-09 | 12 |
serous membrane | 5.64e-09 | 12 |
thoracic segment blood vessel | 1.36e-08 | 5 |
subclavian artery | 1.36e-08 | 5 |
dense regular connective tissue | 4.33e-07 | 3 |
tendon | 4.33e-07 | 3 |
regular connective tissue | 4.33e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 3.28e-14 | 5 |
myotonic disease | 3.28e-14 | 5 |
muscle tissue disease | 3.28e-14 | 5 |
myopathy | 3.28e-14 | 5 |
muscular disease | 3.28e-14 | 5 |
myotonic dystrophy | 3.28e-14 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.