FFCP PHASE1:Mm9::chr3:128928440..128928460,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=489|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:128928440..128928460,-|id=chr3:128928440..128928460,-|ontology_enrichment_celltype=CL:0002563!4.19e-10!9;CL:0002251!4.19e-10!9;CL:0000239!9.40e-08!6;CL:0000677!9.40e-08!6;CL:0000212!9.40e-08!6;CL:0000584!9.40e-08!6|ontology_enrichment_celltype_v019_2=CL:0002563,2.59e-15,9;CL:0002251,2.59e-15,9;CL:0000239,1.55e-11,6;CL:0000677,1.55e-11,6;CL:0000584,1.55e-11,6;CL:0000075,9.40e-10,7;CL:0002076,2.01e-08,15;CL:0000066,3.08e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!5.09e-21!43;UBERON:0000344!6.01e-16!15;UBERON:0005409!3.09e-15!59;UBERON:0001242!3.27e-14!13;UBERON:0000060!3.27e-14!13;UBERON:0001262!3.27e-14!13;UBERON:0004786!3.27e-14!13;UBERON:0004923!3.98e-10!24;UBERON:0003350!4.19e-10!9;UBERON:0004808!4.19e-10!9;UBERON:0001277!4.19e-10!9;UBERON:0000485!8.79e-08!11|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.41e-48,31;UBERON:0005409,1.58e-31,47;UBERON:0000344,9.70e-25,15;UBERON:0001242,6.17e-22,13;UBERON:0001262,6.17e-22,13;UBERON:0004786,6.17e-22,13;UBERON:0003350,2.59e-15,9;UBERON:0004808,2.59e-15,9;UBERON:0001277,2.59e-15,9;UBERON:0004923,5.73e-14,24;UBERON:0000485,3.56e-12,11;UBERON:0001007,1.64e-09,116;UBERON:0001555,1.64e-09,116;UBERON:0007026,1.64e-09,116;UBERON:0004119,3.27e-09,118;UBERON:0000925,3.27e-09,118;UBERON:0006595,3.27e-09,118;UBERON:0002113,1.25e-08,14;UBERON:0003918,1.25e-08,14;UBERON:0011143,1.25e-08,14;UBERON:0005095,1.25e-08,14;UBERON:0007687,1.25e-08,14;UBERON:0004921,3.25e-08,114;UBERON:0002108,4.86e-08,4|phase1_expression=0,12.9120900826564,9.09998478779072,16.030603199262,15.5277676283368,4.53274034162102,4.90586545250604,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,5.11975752938901,4.35877634027623,13.2073351746455,6.46142994238612,10.7735616342945,13.3016393619462,10.837295579677,5.54326276638262,0,0,0,3.46621943701529,1.82858109894342,4.49172583777212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0,0.461230994512117,0,0,0,0.247194967734374,0,0,0,0,0,14.9113408974498,0,0,11.7510245395952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59963200862735,12.6936271998501,0.213288250535234,1.39342003116263,2.19074684247559,5.44545516483025,8.89512175379481,6.46767128782701,14.7104009078799,7.90554982675252,6.78605063760728,3.97912944082302,7.60359939764569,11.6846523125049,8.42938394511308,5.37681437786791,2.0863469104839,3.99869794134051,15.7790829942313,8.5533557695032,12.2190066915604,5.11991485199326,3.47800954183415,1.77132177575523,1.8839847340965,0.246794327843601,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0.214337035031592,0.532020700926821,0.178368817602071,0.164549020602121,0,0.23467170806371,0,0,0,0.161464426695906,0,0,0,5.82961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0,0,0,0,22.9418502726473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0,0.735374033800057,0.222246727801615,0.824140228955577,0.320919209591815,1.01078884705519,0.760437899670719,1.32038438970253,0.37456602987953,0.576226371643824,0.689225627467359,0,0.695305955669133,0.77163688185482,0.824171801606613,0.441596760403192,0.342869252385415,1.4198064492747,0.476872379894642,0.581385666529314,0.470546902076653,0.592302255241736,1.09756783723664,0.263069711437843,1.49384525230448,0,0.711810108745045,0.689531376628944,1.22769312950907,0.77468420592983,0.192906610981141,0,1.16965804222704,0.429742108096597,0,0,0|short_description=p@chr3:128928440..128928460,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=489 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:128928440..128928460,- | |||
|id=chr3:128928440..128928460,- | |||
|ontology_enrichment_celltype=CL:0002563!4.19e-10!9;CL:0002251!4.19e-10!9;CL:0000239!9.40e-08!6;CL:0000677!9.40e-08!6;CL:0000212!9.40e-08!6;CL:0000584!9.40e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.59e-15,9;CL:0002251,2.59e-15,9;CL:0000239,1.55e-11,6;CL:0000677,1.55e-11,6;CL:0000584,1.55e-11,6;CL:0000075,9.40e-10,7;CL:0002076,2.01e-08,15;CL:0000066,3.08e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!5.09e-21!43;UBERON:0000344!6.01e-16!15;UBERON:0005409!3.09e-15!59;UBERON:0001242!3.27e-14!13;UBERON:0000060!3.27e-14!13;UBERON:0001262!3.27e-14!13;UBERON:0004786!3.27e-14!13;UBERON:0004923!3.98e-10!24;UBERON:0003350!4.19e-10!9;UBERON:0004808!4.19e-10!9;UBERON:0001277!4.19e-10!9;UBERON:0000485!8.79e-08!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.41e-48,31;UBERON:0005409,1.58e-31,47;UBERON:0000344,9.70e-25,15;UBERON:0001242,6.17e-22,13;UBERON:0001262,6.17e-22,13;UBERON:0004786,6.17e-22,13;UBERON:0003350,2.59e-15,9;UBERON:0004808,2.59e-15,9;UBERON:0001277,2.59e-15,9;UBERON:0004923,5.73e-14,24;UBERON:0000485,3.56e-12,11;UBERON:0001007,1.64e-09,116;UBERON:0001555,1.64e-09,116;UBERON:0007026,1.64e-09,116;UBERON:0004119,3.27e-09,118;UBERON:0000925,3.27e-09,118;UBERON:0006595,3.27e-09,118;UBERON:0002113,1.25e-08,14;UBERON:0003918,1.25e-08,14;UBERON:0011143,1.25e-08,14;UBERON:0005095,1.25e-08,14;UBERON:0007687,1.25e-08,14;UBERON:0004921,3.25e-08,114;UBERON:0002108,4.86e-08,4 | |||
|phase1_expression=0,12.9120900826564,9.09998478779072,16.030603199262,15.5277676283368,4.53274034162102,4.90586545250604,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,5.11975752938901,4.35877634027623,13.2073351746455,6.46142994238612,10.7735616342945,13.3016393619462,10.837295579677,5.54326276638262,0,0,0,3.46621943701529,1.82858109894342,4.49172583777212,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0,0.461230994512117,0,0,0,0.247194967734374,0,0,0,0,0,14.9113408974498,0,0,11.7510245395952,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.59963200862735,12.6936271998501,0.213288250535234,1.39342003116263,2.19074684247559,5.44545516483025,8.89512175379481,6.46767128782701,14.7104009078799,7.90554982675252,6.78605063760728,3.97912944082302,7.60359939764569,11.6846523125049,8.42938394511308,5.37681437786791,2.0863469104839,3.99869794134051,15.7790829942313,8.5533557695032,12.2190066915604,5.11991485199326,3.47800954183415,1.77132177575523,1.8839847340965,0.246794327843601,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178065603667255,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0.214337035031592,0.532020700926821,0.178368817602071,0.164549020602121,0,0.23467170806371,0,0,0,0.161464426695906,0,0,0,5.82961673259701,0,0,0,0,0,0,0,0,0,0,0,0,0.203319467126849,0.108005340821801,0,0,0,0,0,22.9418502726473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486213434136588,0,0.735374033800057,0.222246727801615,0.824140228955577,0.320919209591815,1.01078884705519,0.760437899670719,1.32038438970253,0.37456602987953,0.576226371643824,0.689225627467359,0,0.695305955669133,0.77163688185482,0.824171801606613,0.441596760403192,0.342869252385415,1.4198064492747,0.476872379894642,0.581385666529314,0.470546902076653,0.592302255241736,1.09756783723664,0.263069711437843,1.49384525230448,0,0.711810108745045,0.689531376628944,1.22769312950907,0.77468420592983,0.192906610981141,0,1.16965804222704,0.429742108096597,0,0,0 | |||
|short_description=p@chr3:128928440..128928460,- | |||
}} |
Revision as of 01:29, 14 September 2013
Short description: | p@chr3:128928440..128928460, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:128928440..128928460, - |
Coexpression cluster: | MCL_coexpression_mm9:489 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.59e-15 | 9 |
epithelial cell of alimentary canal | 2.59e-15 | 9 |
brush border epithelial cell | 1.55e-11 | 6 |
gut absorptive cell | 1.55e-11 | 6 |
enterocyte | 1.55e-11 | 6 |
columnar/cuboidal epithelial cell | 9.40e-10 | 7 |
endo-epithelial cell | 2.01e-08 | 15 |
epithelial cell | 3.08e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.41e-48 | 31 |
gastrointestinal system | 1.58e-31 | 47 |
mucosa | 9.70e-25 | 15 |
intestinal mucosa | 6.17e-22 | 13 |
wall of intestine | 6.17e-22 | 13 |
gastrointestinal system mucosa | 6.17e-22 | 13 |
epithelium of mucosa | 2.59e-15 | 9 |
gastrointestinal system epithelium | 2.59e-15 | 9 |
intestinal epithelium | 2.59e-15 | 9 |
organ component layer | 5.73e-14 | 24 |
simple columnar epithelium | 3.56e-12 | 11 |
digestive system | 1.64e-09 | 116 |
digestive tract | 1.64e-09 | 116 |
primitive gut | 1.64e-09 | 116 |
endoderm-derived structure | 3.27e-09 | 118 |
endoderm | 3.27e-09 | 118 |
presumptive endoderm | 3.27e-09 | 118 |
kidney | 1.25e-08 | 14 |
kidney mesenchyme | 1.25e-08 | 14 |
upper urinary tract | 1.25e-08 | 14 |
kidney rudiment | 1.25e-08 | 14 |
kidney field | 1.25e-08 | 14 |
subdivision of digestive tract | 3.25e-08 | 114 |
small intestine | 4.86e-08 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.