FFCP PHASE1:Mm9::chr5:135462172..135462193,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=12739|HGNC=|MCL_coexpression_id=963|UniProt=Q9Z0G9,Q545A5|association_with_transcript=88bp_to_ENSMUST00000094245,NM_009902,uc008zxe.2_5end|description=CAGE_peak_2_at_Cldn3_5end|id=chr5:135462172..135462193,+|ontology_enrichment_celltype=CL:0000066!1.10e-10!25;CL:0000223!2.31e-08!20;CL:0002563!2.26e-07!9;CL:0002251!2.26e-07!9|ontology_enrichment_celltype_v019_2=CL:0000066,1.35e-13,25;CL:0000223,2.27e-11,20;CL:0002563,3.59e-09,9;CL:0002251,3.59e-09,9;CL:0002076,1.76e-08,15;CL:0000075,4.15e-07,7;CL:0000239,8.68e-07,6;CL:0000677,8.68e-07,6;CL:0000584,8.68e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.47e-20!43;UBERON:0004119!3.01e-20!130;UBERON:0000925!3.01e-20!130;UBERON:0006595!3.01e-20!130;UBERON:0001007!1.01e-19!128;UBERON:0001555!1.01e-19!128;UBERON:0007026!1.01e-19!128;UBERON:0004921!2.24e-18!126;UBERON:0004185!2.24e-18!126;UBERON:0005409!7.48e-16!59;UBERON:0000466!1.02e-11!79;UBERON:0000344!1.19e-11!15;UBERON:0001242!3.65e-10!13;UBERON:0000060!3.65e-10!13;UBERON:0001262!3.65e-10!13;UBERON:0004786!3.65e-10!13;UBERON:0005177!1.74e-09!85;UBERON:0002108!1.72e-08!16;UBERON:0002100!1.01e-07!98;UBERON:0009569!1.66e-07!66;UBERON:0000464!1.69e-07!57;UBERON:0005178!1.74e-07!17;UBERON:0005181!1.74e-07!17;UBERON:0002224!1.74e-07!17;UBERON:0000915!1.74e-07!17;UBERON:0008947!1.74e-07!17;UBERON:0003258!1.74e-07!17;UBERON:0000485!1.95e-07!11;UBERON:0003350!2.26e-07!9;UBERON:0004808!2.26e-07!9;UBERON:0001277!2.26e-07!9;UBERON:0004923!2.64e-07!24;UBERON:0001045!9.88e-07!13|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.40e-19,31;UBERON:0004119,3.75e-18,118;UBERON:0000925,3.75e-18,118;UBERON:0006595,3.75e-18,118;UBERON:0001007,1.44e-17,116;UBERON:0001555,1.44e-17,116;UBERON:0007026,1.44e-17,116;UBERON:0004921,4.39e-16,114;UBERON:0000344,9.16e-15,15;UBERON:0005177,5.02e-13,79;UBERON:0001242,8.07e-13,13;UBERON:0001262,8.07e-13,13;UBERON:0004786,8.07e-13,13;UBERON:0005409,2.30e-11,47;UBERON:0002100,8.37e-11,90;UBERON:0004923,5.86e-10,24;UBERON:0003350,3.59e-09,9;UBERON:0004808,3.59e-09,9;UBERON:0001277,3.59e-09,9;UBERON:0005178,1.35e-08,17;UBERON:0005181,1.35e-08,17;UBERON:0002224,1.35e-08,17;UBERON:0000915,1.35e-08,17;UBERON:0008947,1.35e-08,17;UBERON:0003258,1.35e-08,17;UBERON:0000485,2.67e-08,11;UBERON:0009569,3.65e-08,66;UBERON:0005911,4.87e-08,69;UBERON:0001264,1.72e-07,12;UBERON:0009854,9.12e-07,23;UBERON:0009856,9.12e-07,23|phase1_expression=0.80074423552397,18.4956966048861,29.1199513209303,8.77146212789807,13.5241847085514,14.2697381125106,18.221785966451,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,19.0390983124154,22.7115188256498,17.8011908875656,22.3996238002719,21.1161808032171,24.7030445293286,16.1299283046356,27.9380443425684,0,0,0,10.6875099307972,10.472782657585,12.2501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,4.34796733052517,6.88339101585109,4.75979933595425,7.01614149129162,6.49776417447669,4.03224198387602,3.7919993435573,0,0,0,3.38024207464033,0,0,0,17.3192832808971,15.454951793981,13.6491600153991,3.88225191044804,0,0,0,0,0.461230994512117,0,0.117588707135705,0,19.7755974187499,0,0,0,0,0,16.775258509631,0,0,12.0064815948038,0,0,0,0,0,0,0,0,0,0,1.2220723662038,3.35898820647251,14.6579199891531,1.68353484709179,0,0.229902104433473,0.180062129805349,0.150704817835715,0.476255494059295,0,0.281105173679186,1.03481348295606,0.431135985865684,0,0,0.876782929710299,0.556094498451196,0,0,0.199034266818493,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0.102904612379284,9.91256348951394,12.164726066523,0,0.696710015581316,2.96395161040815,2.01683524623343,2.00140239460383,2.28270751335071,6.64340686162316,3.45867804920423,2.76468729680296,3.97912944082302,2.72949721966768,6.29173586057955,8.42938394511308,9.35963984295526,2.84501851429623,0.913988100877831,2.25415471346161,0.407302655690628,1.16371492300575,1.19230893813542,0.822074982615345,0,0.156998727841375,0.493588655687202,5.92905254174298,0,0.196558995113203,0,0,0,0.50925170356284,1.15078454980324,1.62135226775035,3.56929837144506,8.62609239164127,9.67566463938109,7.17686648163489,6.81962970457202,4.84373016509163,6.75420929908714,4.61882975416512,0.568474235311454,1.30371981153621,2.8856664581782,3.75504397261603,6.19773152534718,7.85544014923845,11.9031525193257,1.57635144106191,1.7717175171902,1.91345722388985,3.76885623846197,2.76295970985433,3.90552458170081,0,0,0.491764273019036,3.58717770196152,0,0,0,0,0.315508219416257,0,0.646270193198397,0,0,0,0,0,0,0,0.99358059645788,1.42452482933804,0.977321756121456,5.60898418106621,7.96470830039777,5.58395463156457,5.74414758233027,8.29862350925952,2.95301892880773,3.3817866273832,4.9101375701962,2.90826983582004,3.20847640546249,3.16036757935816,4.21674434299995,4.12542172992747,1.70219802876894,1.08036656418786,2.32845630808958,1.50035924522115,0.709360934569094,1.07021290561242,1.64549020602121,4.87143918583359,1.64270195644597,1.0591603543191,5.29268155331909,0.16488625294148,0,0.241251699712623,0.477489376012546,1.14898629821543,3.49777003955821,0,0,0.206386867963223,0,0,0,0,0,0,0,1.90934123603023,0.158167996790568,1.42323626988794,0.756037385752609,0.418176592028937,0.436725127492355,0.809186078308924,0.826534557253359,0,8.55458823725833,3.72803587852155,0.56369293868419,0,0,0,0,0,0.117357238645754,0.13020438484395,0.104859344425711,0,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0.100826185136841,0.292373642219257,0.0962118416403295,0,0.906921534460845,0.887943813496259,0.62799699626633,2.51826924546118,0.386379188064381,3.56596703357246,5.31139710375069,1.71494703263253,9.5298699766719,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0.341467211508268,1.21553358534147,0,0.919217542250071,0.888986911206461,1.85431551515005,1.60459604795908,0.505394423527595,0.50695859978048,0.377252682772152,0.561849044819294,0.832326981263301,0.402048282689293,0.952587382566147,1.27472758539341,0.38581844092741,0.824171801606613,1.03039244094078,0.342869252385415,0.177475806159338,0.238436189947321,0.581385666529314,0.470546902076653,0.846146078916765,0.548783918618318,1.31534855718921,0.679020569229309,1.12228454331548,0.474540072496697,0.985044823755635,0.409231043169689,0.154936841185966,0.578719832943424,1.49886346762768,1.16965804222704,1.93383948643468,0.382576664137687,0.220591419119515,0|short_description=p2@Cldn3}} | ||
|EntrezGene=12739 | |||
|HGNC= | |||
|MCL_coexpression_id=963 | |||
|UniProt=Q9Z0G9,Q545A5 | |||
|association_with_transcript=88bp_to_ENSMUST00000094245,NM_009902,uc008zxe.2_5end | |||
|description=CAGE_peak_2_at_Cldn3_5end | |||
|id=chr5:135462172..135462193,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.10e-10!25;CL:0000223!2.31e-08!20;CL:0002563!2.26e-07!9;CL:0002251!2.26e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.35e-13,25;CL:0000223,2.27e-11,20;CL:0002563,3.59e-09,9;CL:0002251,3.59e-09,9;CL:0002076,1.76e-08,15;CL:0000075,4.15e-07,7;CL:0000239,8.68e-07,6;CL:0000677,8.68e-07,6;CL:0000584,8.68e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.47e-20!43;UBERON:0004119!3.01e-20!130;UBERON:0000925!3.01e-20!130;UBERON:0006595!3.01e-20!130;UBERON:0001007!1.01e-19!128;UBERON:0001555!1.01e-19!128;UBERON:0007026!1.01e-19!128;UBERON:0004921!2.24e-18!126;UBERON:0004185!2.24e-18!126;UBERON:0005409!7.48e-16!59;UBERON:0000466!1.02e-11!79;UBERON:0000344!1.19e-11!15;UBERON:0001242!3.65e-10!13;UBERON:0000060!3.65e-10!13;UBERON:0001262!3.65e-10!13;UBERON:0004786!3.65e-10!13;UBERON:0005177!1.74e-09!85;UBERON:0002108!1.72e-08!16;UBERON:0002100!1.01e-07!98;UBERON:0009569!1.66e-07!66;UBERON:0000464!1.69e-07!57;UBERON:0005178!1.74e-07!17;UBERON:0005181!1.74e-07!17;UBERON:0002224!1.74e-07!17;UBERON:0000915!1.74e-07!17;UBERON:0008947!1.74e-07!17;UBERON:0003258!1.74e-07!17;UBERON:0000485!1.95e-07!11;UBERON:0003350!2.26e-07!9;UBERON:0004808!2.26e-07!9;UBERON:0001277!2.26e-07!9;UBERON:0004923!2.64e-07!24;UBERON:0001045!9.88e-07!13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.40e-19,31;UBERON:0004119,3.75e-18,118;UBERON:0000925,3.75e-18,118;UBERON:0006595,3.75e-18,118;UBERON:0001007,1.44e-17,116;UBERON:0001555,1.44e-17,116;UBERON:0007026,1.44e-17,116;UBERON:0004921,4.39e-16,114;UBERON:0000344,9.16e-15,15;UBERON:0005177,5.02e-13,79;UBERON:0001242,8.07e-13,13;UBERON:0001262,8.07e-13,13;UBERON:0004786,8.07e-13,13;UBERON:0005409,2.30e-11,47;UBERON:0002100,8.37e-11,90;UBERON:0004923,5.86e-10,24;UBERON:0003350,3.59e-09,9;UBERON:0004808,3.59e-09,9;UBERON:0001277,3.59e-09,9;UBERON:0005178,1.35e-08,17;UBERON:0005181,1.35e-08,17;UBERON:0002224,1.35e-08,17;UBERON:0000915,1.35e-08,17;UBERON:0008947,1.35e-08,17;UBERON:0003258,1.35e-08,17;UBERON:0000485,2.67e-08,11;UBERON:0009569,3.65e-08,66;UBERON:0005911,4.87e-08,69;UBERON:0001264,1.72e-07,12;UBERON:0009854,9.12e-07,23;UBERON:0009856,9.12e-07,23 | |||
|phase1_expression=0.80074423552397,18.4956966048861,29.1199513209303,8.77146212789807,13.5241847085514,14.2697381125106,18.221785966451,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,19.0390983124154,22.7115188256498,17.8011908875656,22.3996238002719,21.1161808032171,24.7030445293286,16.1299283046356,27.9380443425684,0,0,0,10.6875099307972,10.472782657585,12.2501613757421,0,0,0,0,0,0,0,0,0,0,0,0,0.194429899074283,0,0,0,0,0,0,0,0.515672092277442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122490799214954,0,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0,4.34796733052517,6.88339101585109,4.75979933595425,7.01614149129162,6.49776417447669,4.03224198387602,3.7919993435573,0,0,0,3.38024207464033,0,0,0,17.3192832808971,15.454951793981,13.6491600153991,3.88225191044804,0,0,0,0,0.461230994512117,0,0.117588707135705,0,19.7755974187499,0,0,0,0,0,16.775258509631,0,0,12.0064815948038,0,0,0,0,0,0,0,0,0,0,1.2220723662038,3.35898820647251,14.6579199891531,1.68353484709179,0,0.229902104433473,0.180062129805349,0.150704817835715,0.476255494059295,0,0.281105173679186,1.03481348295606,0.431135985865684,0,0,0.876782929710299,0.556094498451196,0,0,0.199034266818493,0,0,0,0,0,0.180062061461015,0.23674473558521,0,0,0,0.268273401399619,0,0,0,0,0,0,0,0,0.102904612379284,9.91256348951394,12.164726066523,0,0.696710015581316,2.96395161040815,2.01683524623343,2.00140239460383,2.28270751335071,6.64340686162316,3.45867804920423,2.76468729680296,3.97912944082302,2.72949721966768,6.29173586057955,8.42938394511308,9.35963984295526,2.84501851429623,0.913988100877831,2.25415471346161,0.407302655690628,1.16371492300575,1.19230893813542,0.822074982615345,0,0.156998727841375,0.493588655687202,5.92905254174298,0,0.196558995113203,0,0,0,0.50925170356284,1.15078454980324,1.62135226775035,3.56929837144506,8.62609239164127,9.67566463938109,7.17686648163489,6.81962970457202,4.84373016509163,6.75420929908714,4.61882975416512,0.568474235311454,1.30371981153621,2.8856664581782,3.75504397261603,6.19773152534718,7.85544014923845,11.9031525193257,1.57635144106191,1.7717175171902,1.91345722388985,3.76885623846197,2.76295970985433,3.90552458170081,0,0,0.491764273019036,3.58717770196152,0,0,0,0,0.315508219416257,0,0.646270193198397,0,0,0,0,0,0,0,0.99358059645788,1.42452482933804,0.977321756121456,5.60898418106621,7.96470830039777,5.58395463156457,5.74414758233027,8.29862350925952,2.95301892880773,3.3817866273832,4.9101375701962,2.90826983582004,3.20847640546249,3.16036757935816,4.21674434299995,4.12542172992747,1.70219802876894,1.08036656418786,2.32845630808958,1.50035924522115,0.709360934569094,1.07021290561242,1.64549020602121,4.87143918583359,1.64270195644597,1.0591603543191,5.29268155331909,0.16488625294148,0,0.241251699712623,0.477489376012546,1.14898629821543,3.49777003955821,0,0,0.206386867963223,0,0,0,0,0,0,0,1.90934123603023,0.158167996790568,1.42323626988794,0.756037385752609,0.418176592028937,0.436725127492355,0.809186078308924,0.826534557253359,0,8.55458823725833,3.72803587852155,0.56369293868419,0,0,0,0,0,0.117357238645754,0.13020438484395,0.104859344425711,0,0.288030006257865,0,0,0,0,0,0.198681354781265,0,0,0,0,0.100826185136841,0.292373642219257,0.0962118416403295,0,0.906921534460845,0.887943813496259,0.62799699626633,2.51826924546118,0.386379188064381,3.56596703357246,5.31139710375069,1.71494703263253,9.5298699766719,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0.341467211508268,1.21553358534147,0,0.919217542250071,0.888986911206461,1.85431551515005,1.60459604795908,0.505394423527595,0.50695859978048,0.377252682772152,0.561849044819294,0.832326981263301,0.402048282689293,0.952587382566147,1.27472758539341,0.38581844092741,0.824171801606613,1.03039244094078,0.342869252385415,0.177475806159338,0.238436189947321,0.581385666529314,0.470546902076653,0.846146078916765,0.548783918618318,1.31534855718921,0.679020569229309,1.12228454331548,0.474540072496697,0.985044823755635,0.409231043169689,0.154936841185966,0.578719832943424,1.49886346762768,1.16965804222704,1.93383948643468,0.382576664137687,0.220591419119515,0 | |||
|short_description=p2@Cldn3 | |||
}} |
Revision as of 06:38, 14 September 2013
Short description: | p2@Cldn3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cldn3_5end |
Coexpression cluster: | MCL_coexpression_mm9:963 |
Association with transcript: | 88bp_to_ENSMUST00000094245, NM_009902, uc008zxe.2_5end |
EntrezGene: | Cldn3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.35e-13 | 25 |
endodermal cell | 2.27e-11 | 20 |
intestinal epithelial cell | 3.59e-09 | 9 |
epithelial cell of alimentary canal | 3.59e-09 | 9 |
endo-epithelial cell | 1.76e-08 | 15 |
columnar/cuboidal epithelial cell | 4.15e-07 | 7 |
brush border epithelial cell | 8.68e-07 | 6 |
gut absorptive cell | 8.68e-07 | 6 |
enterocyte | 8.68e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.40e-19 | 31 |
endoderm-derived structure | 3.75e-18 | 118 |
endoderm | 3.75e-18 | 118 |
presumptive endoderm | 3.75e-18 | 118 |
digestive system | 1.44e-17 | 116 |
digestive tract | 1.44e-17 | 116 |
primitive gut | 1.44e-17 | 116 |
subdivision of digestive tract | 4.39e-16 | 114 |
mucosa | 9.16e-15 | 15 |
trunk region element | 5.02e-13 | 79 |
intestinal mucosa | 8.07e-13 | 13 |
wall of intestine | 8.07e-13 | 13 |
gastrointestinal system mucosa | 8.07e-13 | 13 |
gastrointestinal system | 2.30e-11 | 47 |
trunk | 8.37e-11 | 90 |
organ component layer | 5.86e-10 | 24 |
epithelium of mucosa | 3.59e-09 | 9 |
gastrointestinal system epithelium | 3.59e-09 | 9 |
intestinal epithelium | 3.59e-09 | 9 |
thoracic cavity element | 1.35e-08 | 17 |
thoracic segment organ | 1.35e-08 | 17 |
thoracic cavity | 1.35e-08 | 17 |
thoracic segment of trunk | 1.35e-08 | 17 |
respiratory primordium | 1.35e-08 | 17 |
endoderm of foregut | 1.35e-08 | 17 |
simple columnar epithelium | 2.67e-08 | 11 |
subdivision of trunk | 3.65e-08 | 66 |
endo-epithelium | 4.87e-08 | 69 |
pancreas | 1.72e-07 | 12 |
digestive tract diverticulum | 9.12e-07 | 23 |
sac | 9.12e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.