FFCP PHASE1:Mm9::chr5:138721188..138721244,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71951|HGNC=|MCL_coexpression_id=22|UniProt=F8WHY9,Q8BKV1|association_with_transcript=0bp_to_ENSMUST00000014089,ENSMUST00000159350,ENSMUST00000159689,ENSMUST00000161827,ENSMUST00000161984,ENSMUST00000162909_5end|description=CAGE_peak_1_at_Gpc2_5end|id=chr5:138721188..138721244,-|ontology_enrichment_celltype=CL:0000540!7.90e-10!33;CL:0000047!7.90e-10!33;CL:0000031!7.90e-10!33;CL:0000404!7.90e-10!33;CL:0000393!5.05e-08!39;CL:0000211!5.05e-08!39;CL:0000221!2.12e-07!44;CL:0000133!2.12e-07!44;CL:0002319!2.91e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,7.75e-10,33;CL:0000047,7.75e-10,33;CL:0000031,7.75e-10,33;CL:0000404,7.75e-10,33;CL:0000393,4.98e-08,39;CL:0000211,4.98e-08,39;CL:0000221,2.09e-07,44;CL:0000133,2.09e-07,44;CL:0002319,2.88e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000468!2.72e-08!333;UBERON:0000922!2.64e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0000922,5.01e-07,320|phase1_expression=28.1861970904437,0,0.454999239389536,0,0,5.87577451691614,5.60670337429262,1.29123323441576,1.83025338797167,0.468129052643987,1.54096171402954,0.478632953972018,2.22560948910567,0.524522414513984,0.333109761815663,1.82227740650843,0,1.89277299214943,1.7824876368746,0.84877930359606,4.67738095830884,1.78723712161594,0.261199789138935,2.07990149631429,1.37645568640302,1.14846392823004,0.86152399231815,1.29282739611533,0.760093677825496,0.252030129759931,3.99114919179548,0,0,0,0.577703239502549,1.16364251750945,1.42918549383658,6.69650609179052,3.1253413780952,4.18818995179039,8.82347232046521,11.6117732442936,6.79714494243615,7.80560271448579,7.09638518536602,8.81024410376071,7.82391344348039,10.0291571935005,3.29529274101708,1.55543919259427,5.03951117851305,5.75010257459886,1.34226084846189,2.17608642603403,1.00828139742739,1.80081605225163,2.86533439938757,6.18806510732931,261.999816813179,292.003020558162,276.350491928694,10.165335962074,4.4464739805557,0.449949858640699,0.988866362566974,0.7104801149461,11.3848041996994,14.2160772968975,171.398929145914,184.148099884426,177.514267380566,11.9973413449598,13.693849539,182.878763227926,181.818858521594,230.723915439115,5.50579404996943,2.55374676170375,1.99688493233117,272.21329787512,246.376224221289,225.03457608052,3.90856198601933,3.37657566019008,2.90316670775939,21.5078867395777,20.6438937158699,159.557925626457,2.19605960666234,4.83657984683427,2.31891590961342,0,0,0,0,0,2.38755514223978,0,0,0,19.5772353489586,1.28326477414318,2.54805239706646,7.11066703153331,5.19578498426914,2.78695852022608,2.52762222507392,1.25602267690966,5.43769555659061,1.63286352971307,23.4205191134283,17.0500667854799,11.761390360059,9.79697163592047,9.28950786372068,2.38766523526383,3.21353458054686,1.73519228303894,3.5384422077995,5.3383060482645,4.85851340612866,12.1218813283806,1.86391761218122,2.92780797011547,2.09446706813455,1.53274233125155,2.27648736561249,2.99951365496704,2.03312363316904,4.19413790333504,5.49000723382352,134.324502408652,3.65031072403781,4.09144731728529,3.53239675751252,3.0825839982874,14.5630290305952,10.4501855312478,11.8779696463827,2.10441855886474,75.7300978042936,92.6505480866896,74.9058459990253,81.983420902629,58.1712067743853,60.9821308555885,54.9092105920011,7.24369438069244,63.3769899222556,124.431800750425,101.875700890926,55.675716036604,48.1021741160284,22.2881386574187,16.8741351854514,53.9382863078117,4.91549231119264,1.28673953557358,1.70498099637356,24.2337153866537,29.7848096175992,22.1476335597048,23.674473558521,17.7087808572663,12.8041703696524,10.4640275137684,6.17028823219124,3.03589890154641,5.9241545968853,4.59668899421467,2.1888578577381,0.730999937126662,2.63460138349261,1.07365135008297,4.6263788684108,128.527860861726,0.660837565967596,0.528901133327089,69.318681423951,52.2532511685987,32.2168653305233,23.7986559055544,18.0126215514345,12.3646656973163,1.89811624617805,3.12928013975621,6.03204501120647,5.37182474511107,7.21367122340745,1.79763881730844,2.80979464837102,2.58883655230677,39.6405912991941,40.7867190016732,46.210171625963,29.9367451932612,27.7352056649705,12.6244475802573,14.8605862242005,2.36176236767363,2.04098346193787,1.97435462274881,0.889357881261447,8.5091003915208,11.0073037263394,4.04751802292737,5.07150303471257,4.3411888755435,3.31013607315846,3.16465751195892,1.78348749452539,1.09824565275233,1.43768206527355,2.23284568601102,3.74445207737473,0.757736633841335,0,0.482443521363367,2.95605104266567,48.8887842367851,34.0596800763834,29.3658998391075,20.6527418493882,16.9181320016234,9.04565835366852,5.65887578787617,17.6551361398934,18.8244986201459,18.975117470241,4.7520361267564,4.66249451037918,3.7608755231193,0,1.63171705145613,0.983528546038072,2.75936746304733,4.81651769963376,3.98519734413491,0,2.7771801992481,39.4385274270321,35.9203644752907,66.1349831039693,43.2533524294119,67.9535955951302,59.4460714656548,29.1463705205924,44.1306345446081,52.5732744668876,4.81981974632711,14.4778886912434,32.9421366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| ||
|EntrezGene=71951 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|UniProt=F8WHY9,Q8BKV1 | |||
|association_with_transcript=0bp_to_ENSMUST00000014089,ENSMUST00000159350,ENSMUST00000159689,ENSMUST00000161827,ENSMUST00000161984,ENSMUST00000162909_5end | |||
|description=CAGE_peak_1_at_Gpc2_5end | |||
|id=chr5:138721188..138721244,- | |||
|ontology_enrichment_celltype=CL:0000540!7.90e-10!33;CL:0000047!7.90e-10!33;CL:0000031!7.90e-10!33;CL:0000404!7.90e-10!33;CL:0000393!5.05e-08!39;CL:0000211!5.05e-08!39;CL:0000221!2.12e-07!44;CL:0000133!2.12e-07!44;CL:0002319!2.91e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.75e-10,33;CL:0000047,7.75e-10,33;CL:0000031,7.75e-10,33;CL:0000404,7.75e-10,33;CL:0000393,4.98e-08,39;CL:0000211,4.98e-08,39;CL:0000221,2.09e-07,44;CL:0000133,2.09e-07,44;CL:0002319,2.88e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000468!2.72e-08!333;UBERON:0000922!2.64e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000922,5.01e-07,320 | |||
|phase1_expression=28.1861970904437,0,0.454999239389536,0,0,5.87577451691614,5.60670337429262,1.29123323441576,1.83025338797167,0.468129052643987,1.54096171402954,0.478632953972018,2.22560948910567,0.524522414513984,0.333109761815663,1.82227740650843,0,1.89277299214943,1.7824876368746,0.84877930359606,4.67738095830884,1.78723712161594,0.261199789138935,2.07990149631429,1.37645568640302,1.14846392823004,0.86152399231815,1.29282739611533,0.760093677825496,0.252030129759931,3.99114919179548,0,0,0,0.577703239502549,1.16364251750945,1.42918549383658,6.69650609179052,3.1253413780952,4.18818995179039,8.82347232046521,11.6117732442936,6.79714494243615,7.80560271448579,7.09638518536602,8.81024410376071,7.82391344348039,10.0291571935005,3.29529274101708,1.55543919259427,5.03951117851305,5.75010257459886,1.34226084846189,2.17608642603403,1.00828139742739,1.80081605225163,2.86533439938757,6.18806510732931,261.999816813179,292.003020558162,276.350491928694,10.165335962074,4.4464739805557,0.449949858640699,0.988866362566974,0.7104801149461,11.3848041996994,14.2160772968975,171.398929145914,184.148099884426,177.514267380566,11.9973413449598,13.693849539,182.878763227926,181.818858521594,230.723915439115,5.50579404996943,2.55374676170375,1.99688493233117,272.21329787512,246.376224221289,225.03457608052,3.90856198601933,3.37657566019008,2.90316670775939,21.5078867395777,20.6438937158699,159.557925626457,2.19605960666234,4.83657984683427,2.31891590961342,0,0,0,0,0,2.38755514223978,0,0,0,19.5772353489586,1.28326477414318,2.54805239706646,7.11066703153331,5.19578498426914,2.78695852022608,2.52762222507392,1.25602267690966,5.43769555659061,1.63286352971307,23.4205191134283,17.0500667854799,11.761390360059,9.79697163592047,9.28950786372068,2.38766523526383,3.21353458054686,1.73519228303894,3.5384422077995,5.3383060482645,4.85851340612866,12.1218813283806,1.86391761218122,2.92780797011547,2.09446706813455,1.53274233125155,2.27648736561249,2.99951365496704,2.03312363316904,4.19413790333504,5.49000723382352,134.324502408652,3.65031072403781,4.09144731728529,3.53239675751252,3.0825839982874,14.5630290305952,10.4501855312478,11.8779696463827,2.10441855886474,75.7300978042936,92.6505480866896,74.9058459990253,81.983420902629,58.1712067743853,60.9821308555885,54.9092105920011,7.24369438069244,63.3769899222556,124.431800750425,101.875700890926,55.675716036604,48.1021741160284,22.2881386574187,16.8741351854514,53.9382863078117,4.91549231119264,1.28673953557358,1.70498099637356,24.2337153866537,29.7848096175992,22.1476335597048,23.674473558521,17.7087808572663,12.8041703696524,10.4640275137684,6.17028823219124,3.03589890154641,5.9241545968853,4.59668899421467,2.1888578577381,0.730999937126662,2.63460138349261,1.07365135008297,4.6263788684108,128.527860861726,0.660837565967596,0.528901133327089,69.318681423951,52.2532511685987,32.2168653305233,23.7986559055544,18.0126215514345,12.3646656973163,1.89811624617805,3.12928013975621,6.03204501120647,5.37182474511107,7.21367122340745,1.79763881730844,2.80979464837102,2.58883655230677,39.6405912991941,40.7867190016732,46.210171625963,29.9367451932612,27.7352056649705,12.6244475802573,14.8605862242005,2.36176236767363,2.04098346193787,1.97435462274881,0.889357881261447,8.5091003915208,11.0073037263394,4.04751802292737,5.07150303471257,4.3411888755435,3.31013607315846,3.16465751195892,1.78348749452539,1.09824565275233,1.43768206527355,2.23284568601102,3.74445207737473,0.757736633841335,0,0.482443521363367,2.95605104266567,48.8887842367851,34.0596800763834,29.3658998391075,20.6527418493882,16.9181320016234,9.04565835366852,5.65887578787617,17.6551361398934,18.8244986201459,18.975117470241,4.7520361267564,4.66249451037918,3.7608755231193,0,1.63171705145613,0.983528546038072,2.75936746304733,4.81651769963376,3.98519734413491,0,2.7771801992481,39.4385274270321,35.9203644752907,66.1349831039693,43.2533524294119,67.9535955951302,59.4460714656548,29.1463705205924,44.1306345446081,52.5732744668876,4.81981974632711,14.4778886912434,32.9421366784422,11.8907480328111,31.0143831188367,2.65490276679926,23.7925023431882,22.3719432153916,10.3732793865744,11.2214719294694,10.4527950300935,6.20227903603731,11.2695456138027,4.9909632973861,5.68866164284469,2.10837217149998,4.12542172992747,3.74483566329167,79.2268813737765,93.267611007366,62.8007512642565,47.1725021488448,29.6092237219437,24.1887060285118,7.61162372786498,7.27482294997502,6.99045833850607,2.42581237860458,14.0153315000258,5.48979050766079,8.26287071515735,5.37175548014114,9.84845398470368,3.49777003955821,5.19190845629427,3.41741761595705,14.859854493352,6.85219751267933,5.08594833912666,2.46049609897845,2.51655990527175,3.22959016988325,2.37917468950219,3.31679937130617,6.68269432610579,69.2775825942686,32.5311147402958,21.8170788460039,19.8633881213745,15.0670168984863,11.1937407499401,8.43065248398426,3.66458318777641,2.33306951925227,2.4853572523477,1.12738587736838,32.7441235836314,20.8477697975943,23.3341426012857,8.00790905561933,16.7266564235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| |||
|short_description=p1@Gpc2 | |||
}} | |||
Revision as of 06:50, 14 September 2013
| Short description: | p1@Gpc2 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_Gpc2_5end |
| Coexpression cluster: | MCL_coexpression_mm9:22 |
| Association with transcript: | 0bp_to_ENSMUST00000014089, ENSMUST00000159350, ENSMUST00000159689, ENSMUST00000161827, ENSMUST00000161984, ENSMUST00000162909_5end |
| EntrezGene: | Gpc2 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 7.75e-10 | 33 |
| neuronal stem cell | 7.75e-10 | 33 |
| neuroblast | 7.75e-10 | 33 |
| electrically signaling cell | 7.75e-10 | 33 |
| electrically responsive cell | 4.98e-08 | 39 |
| electrically active cell | 4.98e-08 | 39 |
| ectodermal cell | 2.09e-07 | 44 |
| neurectodermal cell | 2.09e-07 | 44 |
| neural cell | 2.88e-07 | 43 |
| Ontology term | p-value | n |
|---|---|---|
| embryo | 5.01e-07 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
