FFCP PHASE1:Hg19::chr9:124089007..124089030,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=2934|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=4620|TSSclassifier=S|UniProt=Q5T0H7|association_with_transcript=0bp_to_ENST00000373805_5end|description=CAGE_peak_12_at_GSN_5end|id=chr9:124089007..124089030,+|ontology_enrichment_celltype=CL:0002334!8.64e-07!12|ontology_enrichment_celltype_v019=CL:0002138;3.23e-12;6!CL:0002144;8.55e-10;3|ontology_enrichment_celltype_v019_2=CL:0005020,2.96e-12,6;CL:0002138,2.96e-12,6;CL:0005022,2.96e-12,6;CL:0002144,7.76e-10,3|ontology_enrichment_development_v019=UBERON:0008947;2.08e-14;29!CL:0005022;3.23e-12;6!UBERON:0004872;2.25e-09;7|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.77e-46!115;UBERON:0001049!1.59e-16!57;UBERON:0005068!1.59e-16!57;UBERON:0006241!1.59e-16!57;UBERON:0007135!1.59e-16!57;UBERON:0000477!5.22e-16!286;UBERON:0003080!5.21e-14!42;UBERON:0002616!1.28e-13!59;UBERON:0002780!3.67e-13!41;UBERON:0001890!3.67e-13!41;UBERON:0006240!3.67e-13!41;UBERON:0001737!1.75e-12!9;UBERON:0003075!1.80e-12!86;UBERON:0007284!1.80e-12!86;UBERON:0002020!3.66e-12!34;UBERON:0003528!3.66e-12!34;UBERON:0001893!3.93e-12!34;UBERON:0000064!7.96e-12!219;UBERON:0001557!8.74e-12!19;UBERON:0002791!1.72e-11!33;UBERON:0002346!2.32e-11!90;UBERON:0004111!7.07e-11!241;UBERON:0001017!7.59e-11!82;UBERON:0001869!8.27e-11!32;UBERON:0000955!1.27e-10!69;UBERON:0006238!1.27e-10!69;UBERON:0005743!1.59e-10!86;UBERON:0000468!5.00e-09!659;UBERON:0002420!1.48e-08!9;UBERON:0007245!1.48e-08!9;UBERON:0010009!1.48e-08!9;UBERON:0010011!1.48e-08!9;UBERON:0000454!1.48e-08!9;UBERON:0002308!1.67e-08!9;UBERON:0000125!1.67e-08!9;UBERON:0000073!1.74e-08!94;UBERON:0001016!1.74e-08!94;UBERON:0002298!5.18e-08!8;UBERON:0000025!5.78e-08!194;UBERON:0003056!7.84e-08!61;UBERON:0002619!7.88e-08!22;UBERON:0001950!1.17e-07!20;UBERON:0000467!3.08e-07!625;UBERON:0000480!3.65e-07!626;UBERON:0009663!6.60e-07!7;UBERON:0004457!9.05e-07!12;UBERON:0000042!9.05e-07!12;UBERON:0000153!9.82e-07!129;UBERON:0007811!9.82e-07!129|ontology_enrichment_uberon_v019=UBERON:0001737;3.45e-26;9!UBERON:0001557;3.45e-26;9!UBERON:0010523;8.55e-10;3!UBERON:0001915;8.55e-10;3!UBERON:0001982;8.55e-10;3!UBERON:0001473;4.68e-09;8!UBERON:0004536;4.68e-09;8!UBERON:0006558;4.68e-09;8!UBERON:0000065;1.47e-07;44!UBERON:0002465;3.71e-07;10!UBERON:0005406;4.50e-07;2!UBERON:0005090;6.20e-07;2!UBERON:0001630;6.20e-07;2!UBERON:0000072;8.28e-07;37|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.03e-26,9;UBERON:0001557,8.13e-17,19;UBERON:0008947,2.79e-10,38;UBERON:0003258,2.79e-10,38;UBERON:0010523,7.76e-10,3;UBERON:0001915,7.76e-10,3;UBERON:0001982,7.76e-10,3;UBERON:0007023,4.03e-09,114;UBERON:0001473,4.40e-09,8;UBERON:0004536,4.40e-09,8;UBERON:0006558,4.40e-09,8;UBERON:0000065,1.22e-08,54;UBERON:0000072,1.37e-07,47;UBERON:0001041,2.79e-07,87;UBERON:0002465,3.53e-07,10;UBERON:0005406,4.79e-07,2;UBERON:0005090,5.88e-07,2;UBERON:0001630,5.88e-07,2|phase1_expression=0.181678379270557,0.642301571672949,1.12763523276777,0,0.893922188854576,3.48935409640147,0,0,0.261185628199839,0,0,0.218441372130172,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50401373190767,0.434539556882471,0,0.486634870302636,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0,0,0,1.42306505074684,1.33888245105868,2.81980521976403,5.32190474002959,5.12530320851156,0,0,0,0.22452937262617,0,0,0,0,0,0,0,0,0.379891534993739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0.300091096084402,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.61396520155391,6.57480291304597,3.61516544825223,4.63234685476055,4.57546832594053,2.60997681022206,7.41572194880904,6.08286541888573,3.8474715694639,0,0,0,0,0,2.94848165003288,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,7.79578817909799,10.648666789262,10.4639783729029,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,1.73675465473144,0.153461973288062,0.280660094433074,0.640695746278505,1.53512174720011,0.482561763430822,4.45254199334973,0,0.177561725313127,0.164254312027618,0,0.116210378459959,0,0,0.0920809889358963,0,0,0,0,0,0,0,0,1.13733384070897,0,0.215915916102139,4.62681758070868,0,0,0,0,0,0,0,0,0,0,1.95777922130672,0,0,0,0,0,0,0,0.15350367472613,0,0,0.290033387828457,0.0852266274161009,0,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,2.9555068941673,3.29294892959902,0,0,0,0,0,1.69458841398202,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=2934 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4620 | |||
|TSSclassifier=S | |||
|UniProt=Q5T0H7 | |||
|association_with_transcript=0bp_to_ENST00000373805_5end | |||
|description=CAGE_peak_12_at_GSN_5end | |||
|id=chr9:124089007..124089030,+ | |||
|ontology_enrichment_celltype=CL:0002334!8.64e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0002138;3.23e-12;6!CL:0002144;8.55e-10;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,2.96e-12,6;CL:0002138,2.96e-12,6;CL:0005022,2.96e-12,6;CL:0002144,7.76e-10,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.08e-14;29!CL:0005022;3.23e-12;6!UBERON:0004872;2.25e-09;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.77e-46!115;UBERON:0001049!1.59e-16!57;UBERON:0005068!1.59e-16!57;UBERON:0006241!1.59e-16!57;UBERON:0007135!1.59e-16!57;UBERON:0000477!5.22e-16!286;UBERON:0003080!5.21e-14!42;UBERON:0002616!1.28e-13!59;UBERON:0002780!3.67e-13!41;UBERON:0001890!3.67e-13!41;UBERON:0006240!3.67e-13!41;UBERON:0001737!1.75e-12!9;UBERON:0003075!1.80e-12!86;UBERON:0007284!1.80e-12!86;UBERON:0002020!3.66e-12!34;UBERON:0003528!3.66e-12!34;UBERON:0001893!3.93e-12!34;UBERON:0000064!7.96e-12!219;UBERON:0001557!8.74e-12!19;UBERON:0002791!1.72e-11!33;UBERON:0002346!2.32e-11!90;UBERON:0004111!7.07e-11!241;UBERON:0001017!7.59e-11!82;UBERON:0001869!8.27e-11!32;UBERON:0000955!1.27e-10!69;UBERON:0006238!1.27e-10!69;UBERON:0005743!1.59e-10!86;UBERON:0000468!5.00e-09!659;UBERON:0002420!1.48e-08!9;UBERON:0007245!1.48e-08!9;UBERON:0010009!1.48e-08!9;UBERON:0010011!1.48e-08!9;UBERON:0000454!1.48e-08!9;UBERON:0002308!1.67e-08!9;UBERON:0000125!1.67e-08!9;UBERON:0000073!1.74e-08!94;UBERON:0001016!1.74e-08!94;UBERON:0002298!5.18e-08!8;UBERON:0000025!5.78e-08!194;UBERON:0003056!7.84e-08!61;UBERON:0002619!7.88e-08!22;UBERON:0001950!1.17e-07!20;UBERON:0000467!3.08e-07!625;UBERON:0000480!3.65e-07!626;UBERON:0009663!6.60e-07!7;UBERON:0004457!9.05e-07!12;UBERON:0000042!9.05e-07!12;UBERON:0000153!9.82e-07!129;UBERON:0007811!9.82e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.45e-26;9!UBERON:0001557;3.45e-26;9!UBERON:0010523;8.55e-10;3!UBERON:0001915;8.55e-10;3!UBERON:0001982;8.55e-10;3!UBERON:0001473;4.68e-09;8!UBERON:0004536;4.68e-09;8!UBERON:0006558;4.68e-09;8!UBERON:0000065;1.47e-07;44!UBERON:0002465;3.71e-07;10!UBERON:0005406;4.50e-07;2!UBERON:0005090;6.20e-07;2!UBERON:0001630;6.20e-07;2!UBERON:0000072;8.28e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.03e-26,9;UBERON:0001557,8.13e-17,19;UBERON:0008947,2.79e-10,38;UBERON:0003258,2.79e-10,38;UBERON:0010523,7.76e-10,3;UBERON:0001915,7.76e-10,3;UBERON:0001982,7.76e-10,3;UBERON:0007023,4.03e-09,114;UBERON:0001473,4.40e-09,8;UBERON:0004536,4.40e-09,8;UBERON:0006558,4.40e-09,8;UBERON:0000065,1.22e-08,54;UBERON:0000072,1.37e-07,47;UBERON:0001041,2.79e-07,87;UBERON:0002465,3.53e-07,10;UBERON:0005406,4.79e-07,2;UBERON:0005090,5.88e-07,2;UBERON:0001630,5.88e-07,2 | |||
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|short_description=p12@GSN | |||
}} |
Revision as of 07:17, 14 September 2013
Short description: | p12@GSN |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_12_at_GSN_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000373805_5end |
EntrezGene: | GSN |
HGNC: | 4620 |
UniProt: | Q5T0H7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 2.96e-12 | 6 |
endothelial cell of lymphatic vessel | 2.96e-12 | 6 |
vascular lymphangioblast | 2.96e-12 | 6 |
capillary endothelial cell | 7.76e-10 | 3 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.03e-26 | 9 |
upper respiratory tract | 8.13e-17 | 19 |
respiratory primordium | 2.79e-10 | 38 |
endoderm of foregut | 2.79e-10 | 38 |
microcirculatory vessel | 7.76e-10 | 3 |
endothelium of capillary | 7.76e-10 | 3 |
capillary | 7.76e-10 | 3 |
adult organism | 4.03e-09 | 114 |
lymphatic vessel | 4.40e-09 | 8 |
lymph vasculature | 4.40e-09 | 8 |
lymphatic part of lymphoid system | 4.40e-09 | 8 |
respiratory tract | 1.22e-08 | 54 |
segment of respiratory tract | 1.37e-07 | 47 |
foregut | 2.79e-07 | 87 |
lymphoid system | 3.53e-07 | 10 |
perirenal fat | 4.79e-07 | 2 |
muscle structure | 5.88e-07 | 2 |
muscle organ | 5.88e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.