FFCP PHASE1:Mm9::chr6:113339029..113339053,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=101100|HGNC=|MCL_coexpression_id=38|UniProt=A4Q9E5|association_with_transcript=-200bp_to_ENSMUST00000140505,NM_001142732,uc009dfu.2_5end|description=CAGE_peak_3_at_Ttll3_5end|id=chr6:113339029..113339053,+|ontology_enrichment_celltype=CL:0000034!8.50e-11!97;CL:0000144!1.18e-10!121;CL:0000012!1.18e-10!121;CL:0002371!1.95e-10!118;CL:0000723!2.88e-10!91;CL:0000048!2.88e-10!91;CL:0000548!3.29e-09!115;CL:0000004!3.29e-09!115;CL:0000255!3.29e-09!115;CL:0000063!8.85e-08!66;CL:0002320!1.18e-07!46;CL:0000134!1.18e-07!46;CL:0000219!3.06e-07!54|ontology_enrichment_celltype_v019_2=CL:0000034,1.37e-14,97;CL:0000723,5.92e-14,91;CL:0000048,5.92e-14,91;CL:0002320,7.62e-12,46;CL:0000134,7.62e-12,46;CL:0000219,1.45e-09,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!1.18e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.62e-12,46;UBERON:0002204,6.52e-09,32;UBERON:0002371,6.88e-08,16;UBERON:0001474,9.57e-07,22;UBERON:0004765,9.57e-07,22;UBERON:0001434,9.57e-07,22|phase1_expression=2.7225304007815,0.348975407639361,0.909998478779072,0.30246421130683,0.500895729946347,0,1.16806320297763,1.03298658753261,0.84473233291,0,0.68487187290202,0.797721589953364,1.71200729931206,1.22388563386596,1.33243904726265,0.404950534779652,1.39912375625629,0.946386496074713,1.09691546884591,1.69755860719212,0.510259740906419,1.58865521921416,1.30599894569468,2.55987876469451,2.06468352960453,0,0.86152399231815,0.861884930743556,2.66032787238923,0.504060259519861,0.443461021310609,0,0,0,1.1554064790051,0.664938581433969,1.02084678131185,4.60384793810598,1.5626706890476,4.71171369576418,4.1176204162171,7.5135003345429,7.2826552954673,0.377690453926732,0.709638518536602,2.20256102594018,0,0.436050312760893,0.439372365468944,0.777719596297134,0.979904951377538,1.43752564364972,1.34226084846189,0,1.34437519656986,2.05807548828758,0.85960031981627,2.06268836910977,0.202316460859598,2.11596391708813,0.633831403506179,1.0165335962074,0.889294796111139,12.5985960419396,25.7105254267413,15.6305625288142,9.88680364710736,11.1423308543251,0.414758449233911,1.4850653216486,0.420649922702764,1.71390590642282,2.87129103237098,0.734944795289724,0.287536413054709,0.919218786610021,3.30347642998166,0.893811366596314,1.38245879930619,0.131886287730194,0.640413505216868,0.52091337055676,1.67509799400829,3.93933827022176,1.83357897332172,2.94628585473668,0.996601765593721,0.186399445825301,0.832988126665025,0.831287161174641,0.579728977403356,2.58127163094416,2.03991400112325,2.69851595818909,2.59910566979068,0.896053774194671,0.983110940922263,1.36344258062446,7.27400812888033,2.12003744706204,1.26759077799012,1.28326477414318,0,0,6.061749148314,7.60079596425296,4.54972000513305,1.1418387971906,0,0.445326417194474,1.21439728736295,0.304465478312141,0.691846491768175,0.904335843315735,0.823120949949934,0.753999547978053,0.741584903203122,0.144599356919912,0,0.485300549842228,0.441683036920787,0,0,0.585561594023094,0.209446706813455,0.510914110417183,1.1981512450592,1.19980546198682,3.55796635804581,0.299581278809645,0.457500602818626,0.376963056338593,0.347648640384553,0.511430914660661,0,0.973447578406546,0.509196819251581,0.746441823660558,0.758168275301024,0.210441855886474,0.520481771850815,0.689706313300419,0.360124259610698,0.30140963567143,0.272145996605311,0.12811372028485,0.281105173679186,0,0.215567992932842,0,0,0,0.834141747676794,0.348252166522167,0.411564272815887,0.398068533636986,0,0.51469581422943,1.42081749697796,0.207125772535502,0.703578179943289,0.900310307305074,0,1.18058539048442,0.154267112887378,0,0.804820204198858,0.350296027101508,0.329119699826961,0.492502392237286,0.162137619091711,0.584799949701329,0.439100230582101,0.402619256281115,0,0.823236899034275,0,0,0.213288250535234,0.232236671860439,0,0,0.22237804384487,1.33157938278791,0.949058123089023,1.81168850196412,1.25667604400135,0.397912944082302,0.974820435595601,1.79763881730844,0.864552199498777,0.796565093017469,0.569003702859245,0.685491075658373,0,0.814605311381257,0.387904974335251,0.210407459670956,0.505892296994058,1.18088118383682,0.31399745568275,0.740382983530803,0.889357881261447,0.500535317148282,0.196558995113203,0,0.608580364165509,0.241177159752417,0.763877555344259,0,0.486405680325106,0.549122826376163,4.31304619582064,0.744281895337007,0.624075346229121,0.757736633841335,0.179397413521912,0.964887042726734,0,0.947457058852424,0.162964976442026,0.678980343100753,0.469380496577004,0.167506257441816,0,0.585400943573396,0,0.44292937929755,0.318909537314974,0.655453258862952,0.518054945597687,0.723245292907558,12.0633027151418,15.7732648307426,0.491764273019036,0.551873492609465,0.321101179975584,0.586058432961016,3.11476396215683,0.252470927204373,0.631016438832513,0.390438744296638,0.215423397732799,0.477937595905104,0.222798674082394,0.283076530788832,0.404810701674894,0.876767573733936,0,0,0.141940085208269,1.24645922567079,0.488660878060728,0.494910368917606,0,0.485561272309963,1.5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| ||
|EntrezGene=101100 | |||
|HGNC= | |||
|MCL_coexpression_id=38 | |||
|UniProt=A4Q9E5 | |||
|association_with_transcript=-200bp_to_ENSMUST00000140505,NM_001142732,uc009dfu.2_5end | |||
|description=CAGE_peak_3_at_Ttll3_5end | |||
|id=chr6:113339029..113339053,+ | |||
|ontology_enrichment_celltype=CL:0000034!8.50e-11!97;CL:0000144!1.18e-10!121;CL:0000012!1.18e-10!121;CL:0002371!1.95e-10!118;CL:0000723!2.88e-10!91;CL:0000048!2.88e-10!91;CL:0000548!3.29e-09!115;CL:0000004!3.29e-09!115;CL:0000255!3.29e-09!115;CL:0000063!8.85e-08!66;CL:0002320!1.18e-07!46;CL:0000134!1.18e-07!46;CL:0000219!3.06e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000034,1.37e-14,97;CL:0000723,5.92e-14,91;CL:0000048,5.92e-14,91;CL:0002320,7.62e-12,46;CL:0000134,7.62e-12,46;CL:0000219,1.45e-09,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!1.18e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,7.62e-12,46;UBERON:0002204,6.52e-09,32;UBERON:0002371,6.88e-08,16;UBERON:0001474,9.57e-07,22;UBERON:0004765,9.57e-07,22;UBERON:0001434,9.57e-07,22 | |||
|phase1_expression=2.7225304007815,0.348975407639361,0.909998478779072,0.30246421130683,0.500895729946347,0,1.16806320297763,1.03298658753261,0.84473233291,0,0.68487187290202,0.797721589953364,1.71200729931206,1.22388563386596,1.33243904726265,0.404950534779652,1.39912375625629,0.946386496074713,1.09691546884591,1.69755860719212,0.510259740906419,1.58865521921416,1.30599894569468,2.55987876469451,2.06468352960453,0,0.86152399231815,0.861884930743556,2.66032787238923,0.504060259519861,0.443461021310609,0,0,0,1.1554064790051,0.664938581433969,1.02084678131185,4.60384793810598,1.5626706890476,4.71171369576418,4.1176204162171,7.5135003345429,7.2826552954673,0.377690453926732,0.709638518536602,2.20256102594018,0,0.436050312760893,0.439372365468944,0.777719596297134,0.979904951377538,1.43752564364972,1.34226084846189,0,1.34437519656986,2.05807548828758,0.85960031981627,2.06268836910977,0.202316460859598,2.11596391708813,0.633831403506179,1.0165335962074,0.889294796111139,12.5985960419396,25.7105254267413,15.6305625288142,9.88680364710736,11.1423308543251,0.414758449233911,1.4850653216486,0.420649922702764,1.71390590642282,2.87129103237098,0.734944795289724,0.287536413054709,0.919218786610021,3.30347642998166,0.893811366596314,1.38245879930619,0.131886287730194,0.640413505216868,0.52091337055676,1.67509799400829,3.93933827022176,1.83357897332172,2.94628585473668,0.996601765593721,0.186399445825301,0.832988126665025,0.831287161174641,0.579728977403356,2.58127163094416,2.03991400112325,2.69851595818909,2.59910566979068,0.896053774194671,0.983110940922263,1.36344258062446,7.27400812888033,2.12003744706204,1.26759077799012,1.28326477414318,0,0,6.061749148314,7.60079596425296,4.54972000513305,1.1418387971906,0,0.445326417194474,1.21439728736295,0.304465478312141,0.691846491768175,0.904335843315735,0.823120949949934,0.753999547978053,0.741584903203122,0.144599356919912,0,0.485300549842228,0.441683036920787,0,0,0.585561594023094,0.209446706813455,0.510914110417183,1.1981512450592,1.19980546198682,3.55796635804581,0.299581278809645,0.457500602818626,0.376963056338593,0.347648640384553,0.511430914660661,0,0.973447578406546,0.509196819251581,0.746441823660558,0.758168275301024,0.210441855886474,0.520481771850815,0.689706313300419,0.360124259610698,0.30140963567143,0.272145996605311,0.12811372028485,0.281105173679186,0,0.215567992932842,0,0,0,0.834141747676794,0.348252166522167,0.411564272815887,0.398068533636986,0,0.51469581422943,1.42081749697796,0.207125772535502,0.703578179943289,0.900310307305074,0,1.18058539048442,0.154267112887378,0,0.804820204198858,0.350296027101508,0.329119699826961,0.492502392237286,0.162137619091711,0.584799949701329,0.439100230582101,0.402619256281115,0,0.823236899034275,0,0,0.213288250535234,0.232236671860439,0,0,0.22237804384487,1.33157938278791,0.949058123089023,1.81168850196412,1.25667604400135,0.397912944082302,0.974820435595601,1.79763881730844,0.864552199498777,0.796565093017469,0.569003702859245,0.685491075658373,0,0.814605311381257,0.387904974335251,0.210407459670956,0.505892296994058,1.18088118383682,0.31399745568275,0.740382983530803,0.889357881261447,0.500535317148282,0.196558995113203,0,0.608580364165509,0.241177159752417,0.763877555344259,0,0.486405680325106,0.549122826376163,4.31304619582064,0.744281895337007,0.624075346229121,0.757736633841335,0.179397413521912,0.964887042726734,0,0.947457058852424,0.162964976442026,0.678980343100753,0.469380496577004,0.167506257441816,0,0.585400943573396,0,0.44292937929755,0.318909537314974,0.655453258862952,0.518054945597687,0.723245292907558,12.0633027151418,15.7732648307426,0.491764273019036,0.551873492609465,0.321101179975584,0.586058432961016,3.11476396215683,0.252470927204373,0.631016438832513,0.390438744296638,0.215423397732799,0.477937595905104,0.222798674082394,0.283076530788832,0.404810701674894,0.876767573733936,0,0,0.141940085208269,1.24645922567079,0.488660878060728,0.494910368917606,0,0.485561272309963,1.51161778482376,1.13163047853539,0,0,0.775284879504663,0.727067458955011,1.06949213515416,0.948110273807448,0,0,0.340439605753788,0.18006109403131,1.4229455216103,0.643011105094777,0,0.891844088010353,0.658196082408484,1.522324745573,0.938686832254841,1.0591603543191,0.661585194164886,0.32977250588296,0.484393280087717,0.542816324353403,0.716234064018819,0.656563598980245,1.1659233465194,0,1.02522528478712,1.03193433981611,0.370389054739423,1.50694765603753,1.23024804948923,1.60144721244566,0.849892149969277,0.419854356970974,1.24379976423981,1.90934123603023,0.316335993581135,0.813277868507395,0.648032044930808,0.627264888043406,0.436725127492355,0.539457385539283,0.743881101528023,0.523511883968059,0.518459893167171,0,0,0.747582730219894,1.15820943319968,0.388902376688095,0.774958940866387,1.520605129417,0.352071715937262,0.5208175393758,0.314578033277133,0.724752362478018,0.864090018773596,0.316011120628178,1.41907650703115,1.64337531463724,0.77952493786677,0,0.198681354781265,1.80293174279953,0.738447635872886,0.504832249740738,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| |||
|short_description=p3@Ttll3 | |||
}} | |||
Revision as of 08:32, 14 September 2013
| Short description: | p3@Ttll3 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Ttll3_5end |
| Coexpression cluster: | MCL_coexpression_mm9:38 |
| Association with transcript: | -200bp_to_ENSMUST00000140505, NM_001142732, uc009dfu.2_5end |
| EntrezGene: | Ttll3 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| stem cell | 1.37e-14 | 97 |
| somatic stem cell | 5.92e-14 | 91 |
| multi fate stem cell | 5.92e-14 | 91 |
| connective tissue cell | 7.62e-12 | 46 |
| mesenchymal cell | 7.62e-12 | 46 |
| motile cell | 1.45e-09 | 54 |
| Ontology term | p-value | n |
|---|---|---|
| connective tissue | 7.62e-12 | 46 |
| musculoskeletal system | 6.52e-09 | 32 |
| bone marrow | 6.88e-08 | 16 |
| bone element | 9.57e-07 | 22 |
| skeletal element | 9.57e-07 | 22 |
| skeletal system | 9.57e-07 | 22 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
