FFCP PHASE1:Mm9::chr6:86145436..86145453,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21802|HGNC=|MCL_coexpression_id=892|UniProt=P48030|association_with_transcript=16bp_to_ENSMUST00000032066_5end|description=CAGE_peak_1_at_Tgfa_5end|id=chr6:86145436..86145453,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!9.09e-11!52;UBERON:0005068!9.09e-11!52;UBERON:0006241!9.09e-11!52;UBERON:0007135!9.09e-11!52;UBERON:0007023!5.99e-10!51;UBERON:0000955!8.88e-10!50;UBERON:0006238!8.88e-10!50;UBERON:0002616!2.90e-09!49;UBERON:0000468!6.38e-09!333;UBERON:0004121!8.14e-09!102;UBERON:0000924!8.14e-09!102;UBERON:0006601!8.14e-09!102;UBERON:0000033!1.58e-08!63;UBERON:0002020!6.13e-08!34;UBERON:0004111!8.12e-08!122;UBERON:0003080!2.25e-07!40;UBERON:0001017!2.54e-07!73;UBERON:0005743!2.54e-07!73;UBERON:0000073!3.00e-07!75;UBERON:0001016!3.00e-07!75;UBERON:0002346!4.60e-07!71;UBERON:0003075!4.60e-07!71;UBERON:0007284!4.60e-07!71;UBERON:0002780!5.79e-07!39;UBERON:0001890!5.79e-07!39;UBERON:0006240!5.79e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.28e-11,54;UBERON:0001049,1.31e-10,52;UBERON:0005068,1.31e-10,52;UBERON:0006241,1.31e-10,52;UBERON:0007135,1.31e-10,52;UBERON:0007023,5.97e-10,51;UBERON:0004121,5.71e-09,95;UBERON:0000924,5.71e-09,95;UBERON:0006601,5.71e-09,95;UBERON:0010371,1.35e-08,73;UBERON:0000955,2.63e-08,47;UBERON:0006238,2.63e-08,47;UBERON:0001017,6.49e-08,73;UBERON:0002616,8.55e-08,46;UBERON:0002020,8.58e-08,34;UBERON:0001016,1.28e-07,75;UBERON:0003080,2.95e-07,40;UBERON:0002346,6.01e-07,64;UBERON:0003075,6.01e-07,64;UBERON:0007284,6.01e-07,64;UBERON:0002780,7.95e-07,39;UBERON:0001890,7.95e-07,39;UBERON:0006240,7.95e-07,39|phase1_expression=1.12104192973356,1.39590163055744,1.36499771816861,1.51232105653415,4.00716583957078,0.671517087647559,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,2.97651515528744,0,0,1.91990907352088,2.2940928106717,1.14846392823004,0.86152399231815,1.50829862880122,0.950117097281869,0.252030129759931,1.33038306393183,0.635030673459631,0,0,0.866554859253824,0.166234645358492,0.408338712524738,0,0,0,0,0,0,1.88845226963366,1.31790010585369,2.56965453026354,0.782391344348039,0.218025156380447,1.31811709640683,2.13872888981712,0.419959264876088,0,0,0,0,0.514518872071894,0.573066879877513,3.09403255366465,1.21389876515759,4.23192783417626,1.26766280701236,0.677689064138264,0,0,0,0,5.99200221036809,4.2264013585371,0.622137673850866,0.540023753326763,0.630974884054146,14.2825492201902,15.2399293256613,2.69479758272899,1.43768206527355,2.75765635983006,5.50579404996943,7.53355294702608,7.98753972932466,1.71452174049252,2.74462930807229,0.52091337055676,7.81712397203867,4.50210088025344,8.25110537994775,9.1334861496837,6.26435395516053,4.10078780815661,1.96888102666279,0.906858721281426,3.76823835312181,0,4.75979933595425,5.39703191637817,4.54843492213368,2.68816132258401,3.7919993435573,0,0,0,2.53518155598025,0,2.54805239706646,0,1.94841936910093,2.53359865475099,3.0331466700887,1.37020655662872,18.3845897389492,3.71105347662062,0.693941307064543,1.21786191324856,1.38369298353635,1.05505848386836,1.17588707135705,1.0053327306374,72.1809305784372,1.87979163995885,0,0.647067399789637,0.220841518460394,0.484875253135222,7.45567044872489,4.68449275218475,3.35114730901528,1.53274233125155,0,0,0,8.23848516726525,37.0575488283087,13.4450156760765,7.30062144807561,6.64860189058859,8.93488591606108,11.8436122039463,0.611036183101898,2.98576729464223,3.28539585963777,1.26265113531884,0.260240885925407,0.689706313300419,0.360124259610698,1.65775299619287,1.56483948048054,0.512454881139399,0.0937017245597288,2.58703370739016,0,0.756424320671277,0.703804496655795,0,3.33656699070717,11.4923214952315,7.20237477427802,0.995171334092466,0,0,0,0.207125772535502,0.469052119962192,0.720248245844059,0,0.196764231747404,0.308534225774757,0,0.804820204198858,0.350296027101508,0.822799249567402,0.164167464079095,0.324275238183423,0.438599962275997,0.219550115291051,0.402619256281115,7.99101804543684,2.57261530948211,1.65209391491899,0.264450566663544,0.639864751605702,0.232236671860439,0.644337306610467,0.80673409849337,0.889512175379481,1.14135375667535,0.474529061544512,4.44687177754829,1.75934646160189,0.994782360205754,1.9496408711912,0.898819408654221,0.432276099749388,1.1948476395262,1.13800740571849,1.82797620175566,1.1270773567308,1.01825663922657,1.35766741017338,2.31448205638051,0.379419222745544,0.590440591918409,0.627994911365499,0.370191491765402,3.55743152504579,0.166845105716094,0.393117990226406,0,0.811440485554012,1.92941727801933,1.52775511068852,2.01387296215567,1.45921704097532,6.58947391651396,5.75072826109418,4.46569137202204,12.793544597697,10.1031551178845,3.58794827043824,3.37710464954357,3.51031061316549,0,0.651859905768103,0.678980343100753,0.234690248288502,0.502518772325447,0.238043640886014,1.17080188714679,0.630540576424764,0.44292937929755,0.318909537314974,3.60499292374624,1.03610989119537,2.02508682014116,0,0,0.983528546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| ||
|EntrezGene=21802 | |||
|HGNC= | |||
|MCL_coexpression_id=892 | |||
|UniProt=P48030 | |||
|association_with_transcript=16bp_to_ENSMUST00000032066_5end | |||
|description=CAGE_peak_1_at_Tgfa_5end | |||
|id=chr6:86145436..86145453,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!9.09e-11!52;UBERON:0005068!9.09e-11!52;UBERON:0006241!9.09e-11!52;UBERON:0007135!9.09e-11!52;UBERON:0007023!5.99e-10!51;UBERON:0000955!8.88e-10!50;UBERON:0006238!8.88e-10!50;UBERON:0002616!2.90e-09!49;UBERON:0000468!6.38e-09!333;UBERON:0004121!8.14e-09!102;UBERON:0000924!8.14e-09!102;UBERON:0006601!8.14e-09!102;UBERON:0000033!1.58e-08!63;UBERON:0002020!6.13e-08!34;UBERON:0004111!8.12e-08!122;UBERON:0003080!2.25e-07!40;UBERON:0001017!2.54e-07!73;UBERON:0005743!2.54e-07!73;UBERON:0000073!3.00e-07!75;UBERON:0001016!3.00e-07!75;UBERON:0002346!4.60e-07!71;UBERON:0003075!4.60e-07!71;UBERON:0007284!4.60e-07!71;UBERON:0002780!5.79e-07!39;UBERON:0001890!5.79e-07!39;UBERON:0006240!5.79e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.28e-11,54;UBERON:0001049,1.31e-10,52;UBERON:0005068,1.31e-10,52;UBERON:0006241,1.31e-10,52;UBERON:0007135,1.31e-10,52;UBERON:0007023,5.97e-10,51;UBERON:0004121,5.71e-09,95;UBERON:0000924,5.71e-09,95;UBERON:0006601,5.71e-09,95;UBERON:0010371,1.35e-08,73;UBERON:0000955,2.63e-08,47;UBERON:0006238,2.63e-08,47;UBERON:0001017,6.49e-08,73;UBERON:0002616,8.55e-08,46;UBERON:0002020,8.58e-08,34;UBERON:0001016,1.28e-07,75;UBERON:0003080,2.95e-07,40;UBERON:0002346,6.01e-07,64;UBERON:0003075,6.01e-07,64;UBERON:0007284,6.01e-07,64;UBERON:0002780,7.95e-07,39;UBERON:0001890,7.95e-07,39;UBERON:0006240,7.95e-07,39 | |||
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| |||
|short_description=p1@Tgfa | |||
}} |
Revision as of 10:49, 14 September 2013
Short description: | p1@Tgfa |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tgfa_5end |
Coexpression cluster: | MCL_coexpression_mm9:892 |
Association with transcript: | 16bp_to_ENSMUST00000032066_5end |
EntrezGene: | Tgfa |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.28e-11 | 54 |
neural tube | 1.31e-10 | 52 |
neural rod | 1.31e-10 | 52 |
future spinal cord | 1.31e-10 | 52 |
neural keel | 1.31e-10 | 52 |
adult organism | 5.97e-10 | 51 |
ectoderm-derived structure | 5.71e-09 | 95 |
ectoderm | 5.71e-09 | 95 |
presumptive ectoderm | 5.71e-09 | 95 |
ecto-epithelium | 1.35e-08 | 73 |
brain | 2.63e-08 | 47 |
future brain | 2.63e-08 | 47 |
central nervous system | 6.49e-08 | 73 |
regional part of brain | 8.55e-08 | 46 |
gray matter | 8.58e-08 | 34 |
nervous system | 1.28e-07 | 75 |
anterior neural tube | 2.95e-07 | 40 |
neurectoderm | 6.01e-07 | 64 |
neural plate | 6.01e-07 | 64 |
presumptive neural plate | 6.01e-07 | 64 |
regional part of forebrain | 7.95e-07 | 39 |
forebrain | 7.95e-07 | 39 |
future forebrain | 7.95e-07 | 39 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.