FFCP PHASE1:Mm9::chr7:31758196..31758224,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=54135|HGNC=|UniProt=Q99KG5|association_with_transcript=183bp_to_ENSMUST00000108116_5end|description=CAGE_peak_3_at_Lsr_5end|id=chr7:31758196..31758224,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!5.51e-20!130;UBERON:0000925!5.51e-20!130;UBERON:0006595!5.51e-20!130;UBERON:0001007!1.68e-19!128;UBERON:0001555!1.68e-19!128;UBERON:0007026!1.68e-19!128;UBERON:0004921!2.33e-18!126;UBERON:0004185!2.33e-18!126;UBERON:0000466!2.02e-16!79;UBERON:0000160!3.33e-14!43;UBERON:0005409!4.21e-14!59;UBERON:0005177!2.61e-11!85;UBERON:0000464!4.36e-11!57;UBERON:0000077!2.83e-09!97;UBERON:0009569!1.72e-08!66;UBERON:0001041!3.15e-08!92;UBERON:0000922!5.30e-08!328;UBERON:0002100!9.42e-08!98;UBERON:0002108!9.73e-08!16;UBERON:0000468!1.39e-07!333;UBERON:0000481!3.53e-07!230|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.14e-15,118;UBERON:0000925,3.14e-15,118;UBERON:0006595,3.14e-15,118;UBERON:0001007,8.42e-15,116;UBERON:0001555,8.42e-15,116;UBERON:0007026,8.42e-15,116;UBERON:0004921,8.69e-14,114;UBERON:0005177,9.44e-13,79;UBERON:0000160,1.06e-09,31;UBERON:0005409,2.46e-09,47;UBERON:0002100,9.95e-09,90;UBERON:0009569,2.92e-08,66|phase1_expression=8.96833543786846,12.563114675017,5.91499011206397,6.0492842261366,3.00537437967808,15.7806515597176,26.1646157466989,0.129123323441576,0,0,0,0,0,0,0,0.202475267389826,0,0,0.137114433605739,0,5.69790044012167,0,0,25.7587800697385,30.5114343819336,12.0588712464154,12.0613358924541,18.9614684763582,39.144824408013,21.1705308998342,35.0334206835381,0,0,0,23.6858328196045,23.4390849955474,23.2753066139101,0,0,0.523523743973798,0,0,0,0,0,0,7.04152209913235,0.218025156380447,0,0,8.67915814077248,0,0,0,0,0,0,0,2.02316460859598,2.64495489636016,4.43681982454325,0.338844532069132,2.66788438833342,0.449949858640699,0,0,2.09720077362883,2.30530983192933,4.66603255388149,4.59020190327748,6.30974884054146,1.14260393761521,2.20868540951614,1.46988959057945,1.24599112323707,0,2.20231761998777,0.510749352340751,0.768032666281217,2.1101806036831,1.64677758484337,4.16730696445408,2.23346399201105,1.68828783009504,1.06958773443767,2.35702868378934,3.41692033917847,4.28718725398191,0.227178579999552,0,8.40607017234866,12.0459342777394,60.5174486999898,38.8586297979228,46.1341256387845,55.1073071129723,7.5839986871146,0,0,0,15.3519327556582,0,0,0,62.7824018932521,63.8466860997248,77.3452400872618,11.8751234907822,0.776813650941515,0.593768556259299,5.03107447621794,2.74018930480927,2.99800146432876,1.95939432718409,3.17489509266403,1.13099932196708,36.8320501924217,1.01219549843938,0,0.323533699894818,0,0,13.0474232852686,0.878342391034642,0.209446706813455,22.480220858356,0,0,0,1.04853447583376,0.457500602818626,0.502617408451458,0.347648640384553,0.511430914660661,0.83115217823824,0.486723789203273,9.57290020192973,6.09594155989456,25.7777213602348,3.15662783829711,9.36867189331467,8.04657365517155,5.22180176435513,6.32960234910003,4.89862793889561,3.71529788826064,4.59138450342671,1.55222022443409,15.3053274982318,11.7245769704048,9.50136070485324,10.7405908889512,11.9560317167007,4.179025998266,5.35033554660653,12.5391588095651,0,0,0,5.59239585845855,5.62862543954631,1.98068267607116,2.3674473558521,1.18058539048442,1.3884040159864,0.697601834251224,1.60964040839772,1.40118410840603,0.822799249567402,0.492502392237286,0.162137619091711,1.02339991197733,1.09775057645525,0.536825675041487,1.05144974282064,1.74937841044784,5.94753809370836,18.7759902331116,16.2099070406778,13.9342003116263,23.0672755766547,25.2104405779178,20.2364019898832,16.3594038456801,19.9302205848695,13.6700132420929,11.5614196048124,10.1467800740987,11.1129529657898,21.5716658077013,15.3458015411033,15.1347367673319,14.2250925714811,11.5390997735826,19.1603150644237,16.2921062276251,14.7403890247396,16.6923251338958,11.0031574596208,6.34723636312289,6.90794402502049,5.79966670432462,29.3488100816277,7.34118465150814,8.64859578498093,7.19558759631532,8.11440485554012,14.7118067448974,10.4396599230382,20.7141218964584,11.9980067813526,7.4131581560782,0,12.2806512730606,18.0981850406445,28.2888343300765,25.4744327201115,12.0610880340842,12.7479701214957,9.09558776498327,18.2520773615069,20.3694102930226,26.5199980566007,22.6133447546451,16.4250112211349,14.6350235893349,10.4039195110086,11.2946991720875,11.1618338060241,10.651115456523,12.4333186943445,11.2826265693579,1.50791283939272,0,5.90117127622843,9.65778612066564,1.60550589987792,0.468846746368813,0,1.00988370881749,0.94652465824877,0,0,0,0,0,0.809621403349789,0.292255857911312,0,0.642642632843614,10.0777460497871,12.8207234640424,11.0763132360432,14.6823409445557,9.2921596837974,37.1454373317122,47.4647984434659,38.2868311904473,29.825491180958,24.2873766875703,12.6629863652428,21.8120237686503,20.6768479463138,14.5376908650475,15.8127912862498,11.3449097573006,28.5969268833182,16.3855595568492,24.3194325511578,21.2193664681276,21.6355085043574,25.1500032818919,22.8723138636948,29.2286351150015,10.7948985709307,12.2862601101016,41.9003956304428,6.10079135883476,6.29711264114032,9.83100676328941,13.7278195603607,10.833299383174,18.0718118710507,0.370850604021019,0.341741761595705,8.2554747185289,1.11116716421827,0.565105371014073,0.136694227721025,0.228778173206523,0,0.139951452323658,0.138199973804424,59.189578316937,24.516039502538,23.7883776538413,15.5527690783394,18.1906817532588,20.3077184283945,10.7891477107857,14.2990478404831,17.275892170946,5.18459893167171,11.8054469486516,2.25477175473676,9.12050930868271,9.92750942742586,14.1949367491155,9.17034746691891,11.9958849098453,17.3688713195716,18.6192270326849,18.5601039633508,9.66336483304024,8.06484017522023,2.52808896502543,28.1788049253328,16.3310421892075,10.783428307157,6.80301443536429,6.15912199821921,2.28371354087941,2.65841148914239,2.3222283488074,1.600342939755,0.806609481094724,1.16949456887703,0.962118416403295,1.05189211963412,6.80191150845634,47.2830080686758,29.5158588245175,30.8907694109904,13.3300819882211,12.5747258552292,15.0184331899157,7.5028932677673,17.5550236412377,0.564751842617067,0.460325236507177,0,1.3748254587495,0,0,0,0.45032120322422,0,0.51776031175182,2.59468368960442,6.3843979744165,6.31714341290296,8.50873509739029,2.72497111416377,2.75765262675021,6.00066165064361,4.94484137373346,5.77654577265267,5.81203587056734,3.54871019846336,6.41329560712659,6.46126401542189,5.44213795441389,4.65227298540468,7.62069906052918,5.56244764535306,5.59436739344745,6.59337441285291,4.71036544430071,5.48590803816665,3.72699192934609,5.24559617884106,5.0871245821315,4.89368778159719,6.09225176820071,5.48783918618318,5.26139422875686,4.88894809845102,5.05028044491965,5.69448086996036,5.81176446015824,4.91077251803627,5.88759996506671,6.17301155139652,6.74488560432454,6.55008503647143,6.87587372954555,0.956441660344217,1.32354851471709,0.231867835620421|short_description=p3@Lsr}} | ||
|EntrezGene=54135 | |||
|HGNC= | |||
|UniProt=Q99KG5 | |||
|association_with_transcript=183bp_to_ENSMUST00000108116_5end | |||
|description=CAGE_peak_3_at_Lsr_5end | |||
|id=chr7:31758196..31758224,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!5.51e-20!130;UBERON:0000925!5.51e-20!130;UBERON:0006595!5.51e-20!130;UBERON:0001007!1.68e-19!128;UBERON:0001555!1.68e-19!128;UBERON:0007026!1.68e-19!128;UBERON:0004921!2.33e-18!126;UBERON:0004185!2.33e-18!126;UBERON:0000466!2.02e-16!79;UBERON:0000160!3.33e-14!43;UBERON:0005409!4.21e-14!59;UBERON:0005177!2.61e-11!85;UBERON:0000464!4.36e-11!57;UBERON:0000077!2.83e-09!97;UBERON:0009569!1.72e-08!66;UBERON:0001041!3.15e-08!92;UBERON:0000922!5.30e-08!328;UBERON:0002100!9.42e-08!98;UBERON:0002108!9.73e-08!16;UBERON:0000468!1.39e-07!333;UBERON:0000481!3.53e-07!230 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,3.14e-15,118;UBERON:0000925,3.14e-15,118;UBERON:0006595,3.14e-15,118;UBERON:0001007,8.42e-15,116;UBERON:0001555,8.42e-15,116;UBERON:0007026,8.42e-15,116;UBERON:0004921,8.69e-14,114;UBERON:0005177,9.44e-13,79;UBERON:0000160,1.06e-09,31;UBERON:0005409,2.46e-09,47;UBERON:0002100,9.95e-09,90;UBERON:0009569,2.92e-08,66 | |||
|phase1_expression=8.96833543786846,12.563114675017,5.91499011206397,6.0492842261366,3.00537437967808,15.7806515597176,26.1646157466989,0.129123323441576,0,0,0,0,0,0,0,0.202475267389826,0,0,0.137114433605739,0,5.69790044012167,0,0,25.7587800697385,30.5114343819336,12.0588712464154,12.0613358924541,18.9614684763582,39.144824408013,21.1705308998342,35.0334206835381,0,0,0,23.6858328196045,23.4390849955474,23.2753066139101,0,0,0.523523743973798,0,0,0,0,0,0,7.04152209913235,0.218025156380447,0,0,8.67915814077248,0,0,0,0,0,0,0,2.02316460859598,2.64495489636016,4.43681982454325,0.338844532069132,2.66788438833342,0.449949858640699,0,0,2.09720077362883,2.30530983192933,4.66603255388149,4.59020190327748,6.30974884054146,1.14260393761521,2.20868540951614,1.46988959057945,1.24599112323707,0,2.20231761998777,0.510749352340751,0.768032666281217,2.1101806036831,1.64677758484337,4.16730696445408,2.23346399201105,1.68828783009504,1.06958773443767,2.35702868378934,3.41692033917847,4.28718725398191,0.227178579999552,0,8.40607017234866,12.0459342777394,60.5174486999898,38.8586297979228,46.1341256387845,55.1073071129723,7.5839986871146,0,0,0,15.3519327556582,0,0,0,62.7824018932521,63.8466860997248,77.3452400872618,11.8751234907822,0.776813650941515,0.593768556259299,5.03107447621794,2.74018930480927,2.99800146432876,1.95939432718409,3.17489509266403,1.13099932196708,36.8320501924217,1.01219549843938,0,0.323533699894818,0,0,13.0474232852686,0.878342391034642,0.209446706813455,22.480220858356,0,0,0,1.04853447583376,0.457500602818626,0.502617408451458,0.347648640384553,0.511430914660661,0.83115217823824,0.486723789203273,9.57290020192973,6.09594155989456,25.7777213602348,3.15662783829711,9.36867189331467,8.04657365517155,5.22180176435513,6.32960234910003,4.89862793889561,3.71529788826064,4.59138450342671,1.55222022443409,15.3053274982318,11.7245769704048,9.50136070485324,10.7405908889512,11.9560317167007,4.179025998266,5.35033554660653,12.5391588095651,0,0,0,5.59239585845855,5.62862543954631,1.98068267607116,2.3674473558521,1.18058539048442,1.3884040159864,0.697601834251224,1.60964040839772,1.40118410840603,0.822799249567402,0.492502392237286,0.162137619091711,1.02339991197733,1.09775057645525,0.536825675041487,1.05144974282064,1.74937841044784,5.94753809370836,18.7759902331116,16.2099070406778,13.9342003116263,23.0672755766547,25.2104405779178,20.2364019898832,16.3594038456801,19.9302205848695,13.6700132420929,11.5614196048124,10.1467800740987,11.1129529657898,21.5716658077013,15.3458015411033,15.1347367673319,14.2250925714811,11.5390997735826,19.1603150644237,16.2921062276251,14.7403890247396,16.6923251338958,11.0031574596208,6.34723636312289,6.90794402502049,5.79966670432462,29.3488100816277,7.34118465150814,8.64859578498093,7.19558759631532,8.11440485554012,14.7118067448974,10.4396599230382,20.7141218964584,11.9980067813526,7.4131581560782,0,12.2806512730606,18.0981850406445,28.2888343300765,25.4744327201115,12.0610880340842,12.7479701214957,9.09558776498327,18.2520773615069,20.3694102930226,26.5199980566007,22.6133447546451,16.4250112211349,14.6350235893349,10.4039195110086,11.2946991720875,11.1618338060241,10.651115456523,12.4333186943445,11.2826265693579,1.50791283939272,0,5.90117127622843,9.65778612066564,1.60550589987792,0.468846746368813,0,1.00988370881749,0.94652465824877,0,0,0,0,0,0.809621403349789,0.292255857911312,0,0.642642632843614,10.0777460497871,12.8207234640424,11.0763132360432,14.6823409445557,9.2921596837974,37.1454373317122,47.4647984434659,38.2868311904473,29.825491180958,24.2873766875703,12.6629863652428,21.8120237686503,20.6768479463138,14.5376908650475,15.8127912862498,11.3449097573006,28.5969268833182,16.3855595568492,24.3194325511578,21.2193664681276,21.6355085043574,25.1500032818919,22.8723138636948,29.2286351150015,10.7948985709307,12.2862601101016,41.9003956304428,6.10079135883476,6.29711264114032,9.83100676328941,13.7278195603607,10.833299383174,18.0718118710507,0.370850604021019,0.341741761595705,8.2554747185289,1.11116716421827,0.565105371014073,0.136694227721025,0.228778173206523,0,0.139951452323658,0.138199973804424,59.189578316937,24.516039502538,23.7883776538413,15.5527690783394,18.1906817532588,20.3077184283945,10.7891477107857,14.2990478404831,17.275892170946,5.18459893167171,11.8054469486516,2.25477175473676,9.12050930868271,9.92750942742586,14.1949367491155,9.17034746691891,11.9958849098453,17.3688713195716,18.6192270326849,18.5601039633508,9.66336483304024,8.06484017522023,2.52808896502543,28.1788049253328,16.3310421892075,10.783428307157,6.80301443536429,6.15912199821921,2.28371354087941,2.65841148914239,2.3222283488074,1.600342939755,0.806609481094724,1.16949456887703,0.962118416403295,1.05189211963412,6.80191150845634,47.2830080686758,29.5158588245175,30.8907694109904,13.3300819882211,12.5747258552292,15.0184331899157,7.5028932677673,17.5550236412377,0.564751842617067,0.460325236507177,0,1.3748254587495,0,0,0,0.45032120322422,0,0.51776031175182,2.59468368960442,6.3843979744165,6.31714341290296,8.50873509739029,2.72497111416377,2.75765262675021,6.00066165064361,4.94484137373346,5.77654577265267,5.81203587056734,3.54871019846336,6.41329560712659,6.46126401542189,5.44213795441389,4.65227298540468,7.62069906052918,5.56244764535306,5.59436739344745,6.59337441285291,4.71036544430071,5.48590803816665,3.72699192934609,5.24559617884106,5.0871245821315,4.89368778159719,6.09225176820071,5.48783918618318,5.26139422875686,4.88894809845102,5.05028044491965,5.69448086996036,5.81176446015824,4.91077251803627,5.88759996506671,6.17301155139652,6.74488560432454,6.55008503647143,6.87587372954555,0.956441660344217,1.32354851471709,0.231867835620421 | |||
|short_description=p3@Lsr | |||
}} | |||
Revision as of 13:17, 14 September 2013
| Short description: | p3@Lsr |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_3_at_Lsr_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 183bp_to_ENSMUST00000108116_5end |
| EntrezGene: | Lsr |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 3.14e-15 | 118 |
| endoderm | 3.14e-15 | 118 |
| presumptive endoderm | 3.14e-15 | 118 |
| digestive system | 8.42e-15 | 116 |
| digestive tract | 8.42e-15 | 116 |
| primitive gut | 8.42e-15 | 116 |
| subdivision of digestive tract | 8.69e-14 | 114 |
| trunk region element | 9.44e-13 | 79 |
| intestine | 1.06e-09 | 31 |
| gastrointestinal system | 2.46e-09 | 47 |
| trunk | 9.95e-09 | 90 |
| subdivision of trunk | 2.92e-08 | 66 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
