FFCP PHASE1:Mm9::chr9:46050527..46050532,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=191|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:46050527..46050532,+|id=chr9:46050527..46050532,+|ontology_enrichment_celltype=CL:0000239!5.89e-10!6;CL:0000677!5.89e-10!6;CL:0000212!5.89e-10!6;CL:0000584!5.89e-10!6;CL:0000075!1.81e-08!7;CL:0000473!8.58e-08!3;CL:0000627!8.58e-08!3;CL:0000682!8.58e-08!3;CL:0000066!1.16e-07!25|ontology_enrichment_celltype_v019_2=CL:0000682,5.62e-13,3;CL:0000239,1.39e-11,6;CL:0000677,1.39e-11,6;CL:0000584,1.39e-11,6;CL:0000075,5.99e-10,7;CL:0000066,7.79e-10,25;CL:0002563,9.15e-08,9;CL:0002251,9.15e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.78e-19!43;UBERON:0005409!1.64e-15!59;UBERON:0000344!3.17e-14!15;UBERON:0001242!2.51e-10!13;UBERON:0000060!2.51e-10!13;UBERON:0001262!2.51e-10!13;UBERON:0004786!2.51e-10!13;UBERON:0004923!8.89e-10!24;UBERON:0001007!3.57e-07!128;UBERON:0001555!3.57e-07!128;UBERON:0007026!3.57e-07!128;UBERON:0004119!5.74e-07!130;UBERON:0000925!5.74e-07!130;UBERON:0006595!5.74e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.87e-28,31;UBERON:0005409,8.26e-18,47;UBERON:0000344,2.56e-17,15;UBERON:0001242,3.78e-11,13;UBERON:0001262,3.78e-11,13;UBERON:0004786,3.78e-11,13;UBERON:0004923,1.96e-10,24;UBERON:0001962,2.71e-10,2;UBERON:0001961,2.71e-10,2;UBERON:0001744,2.71e-10,2;UBERON:0001007,3.90e-09,116;UBERON:0001555,3.90e-09,116;UBERON:0007026,3.90e-09,116;UBERON:0004119,6.28e-09,118;UBERON:0000925,6.28e-09,118;UBERON:0006595,6.28e-09,118;UBERON:0003350,9.15e-08,9;UBERON:0004808,9.15e-08,9;UBERON:0001277,9.15e-08,9;UBERON:0002465,3.99e-07,3;UBERON:0004921,6.99e-07,114|phase1_expression=0,3.14077866875425,6.3699893514535,2.41971369045464,0,1.00727563147134,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.91971964335605,8.02932483735095,2.8711598205751,2.15380998079537,1.939241094173,0.190023419456374,0,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0798280022465,0.539703191637817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,2.90895623329899,0,0,0,0.201683524623343,0.22237804384487,0.570676878337677,3.32170343081158,5.76446341534038,3.2673577144035,2.38747766449381,3.70431765526328,0,1.08069024937347,0.597423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0.0936415074698824,0,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0.135804113845862,0.561142271657738,0,0,0,0.154936841185966,0,0,0,0,0,0,0|short_description=p@chr9:46050527..46050532,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=191 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:46050527..46050532,+ | |||
|id=chr9:46050527..46050532,+ | |||
|ontology_enrichment_celltype=CL:0000239!5.89e-10!6;CL:0000677!5.89e-10!6;CL:0000212!5.89e-10!6;CL:0000584!5.89e-10!6;CL:0000075!1.81e-08!7;CL:0000473!8.58e-08!3;CL:0000627!8.58e-08!3;CL:0000682!8.58e-08!3;CL:0000066!1.16e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,5.62e-13,3;CL:0000239,1.39e-11,6;CL:0000677,1.39e-11,6;CL:0000584,1.39e-11,6;CL:0000075,5.99e-10,7;CL:0000066,7.79e-10,25;CL:0002563,9.15e-08,9;CL:0002251,9.15e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.78e-19!43;UBERON:0005409!1.64e-15!59;UBERON:0000344!3.17e-14!15;UBERON:0001242!2.51e-10!13;UBERON:0000060!2.51e-10!13;UBERON:0001262!2.51e-10!13;UBERON:0004786!2.51e-10!13;UBERON:0004923!8.89e-10!24;UBERON:0001007!3.57e-07!128;UBERON:0001555!3.57e-07!128;UBERON:0007026!3.57e-07!128;UBERON:0004119!5.74e-07!130;UBERON:0000925!5.74e-07!130;UBERON:0006595!5.74e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.87e-28,31;UBERON:0005409,8.26e-18,47;UBERON:0000344,2.56e-17,15;UBERON:0001242,3.78e-11,13;UBERON:0001262,3.78e-11,13;UBERON:0004786,3.78e-11,13;UBERON:0004923,1.96e-10,24;UBERON:0001962,2.71e-10,2;UBERON:0001961,2.71e-10,2;UBERON:0001744,2.71e-10,2;UBERON:0001007,3.90e-09,116;UBERON:0001555,3.90e-09,116;UBERON:0007026,3.90e-09,116;UBERON:0004119,6.28e-09,118;UBERON:0000925,6.28e-09,118;UBERON:0006595,6.28e-09,118;UBERON:0003350,9.15e-08,9;UBERON:0004808,9.15e-08,9;UBERON:0001277,9.15e-08,9;UBERON:0002465,3.99e-07,3;UBERON:0004921,6.99e-07,114 | |||
|phase1_expression=0,3.14077866875425,6.3699893514535,2.41971369045464,0,1.00727563147134,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.91971964335605,8.02932483735095,2.8711598205751,2.15380998079537,1.939241094173,0.190023419456374,0,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.0798280022465,0.539703191637817,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.98251269790279,2.90895623329899,0,0,0,0.201683524623343,0.22237804384487,0.570676878337677,3.32170343081158,5.76446341534038,3.2673577144035,2.38747766449381,3.70431765526328,0,1.08069024937347,0.597423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.78925087618806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218362563746178,0,0,0.26175594198403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188626341386076,0.0936415074698824,0,0.0574354689556133,0.476293691283074,0,0,0,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0,0.135804113845862,0.561142271657738,0,0,0,0.154936841185966,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:46050527..46050532,+ | |||
}} |
Revision as of 18:04, 14 September 2013
Short description: | p@chr9:46050527..46050532, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:46050527..46050532, + |
Coexpression cluster: | MCL_coexpression_mm9:191 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 5.62e-13 | 3 |
brush border epithelial cell | 1.39e-11 | 6 |
gut absorptive cell | 1.39e-11 | 6 |
enterocyte | 1.39e-11 | 6 |
columnar/cuboidal epithelial cell | 5.99e-10 | 7 |
epithelial cell | 7.79e-10 | 25 |
intestinal epithelial cell | 9.15e-08 | 9 |
epithelial cell of alimentary canal | 9.15e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.87e-28 | 31 |
gastrointestinal system | 8.26e-18 | 47 |
mucosa | 2.56e-17 | 15 |
intestinal mucosa | 3.78e-11 | 13 |
wall of intestine | 3.78e-11 | 13 |
gastrointestinal system mucosa | 3.78e-11 | 13 |
organ component layer | 1.96e-10 | 24 |
gut-associated lymphoid tissue | 2.71e-10 | 2 |
mucosa-associated lymphoid tissue | 2.71e-10 | 2 |
lymphoid tissue | 2.71e-10 | 2 |
digestive system | 3.90e-09 | 116 |
digestive tract | 3.90e-09 | 116 |
primitive gut | 3.90e-09 | 116 |
endoderm-derived structure | 6.28e-09 | 118 |
endoderm | 6.28e-09 | 118 |
presumptive endoderm | 6.28e-09 | 118 |
epithelium of mucosa | 9.15e-08 | 9 |
gastrointestinal system epithelium | 9.15e-08 | 9 |
intestinal epithelium | 9.15e-08 | 9 |
lymphoid system | 3.99e-07 | 3 |
subdivision of digestive tract | 6.99e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.