FFCP PHASE1:Mm9::chr9:72380594..72380635,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=319758|HGNC=|UniProt=F8VPJ6|association_with_transcript=0bp_to_ENSMUST00000163401_5end|description=CAGE_peak_3_at_Rfx7_5end|id=chr9:72380594..72380635,+|ontology_enrichment_celltype=CL:0000540!9.90e-10!33;CL:0000047!9.90e-10!33;CL:0000031!9.90e-10!33;CL:0000404!9.90e-10!33;CL:0000393!3.13e-07!39;CL:0000211!3.13e-07!39;CL:0000107!7.71e-07!9|ontology_enrichment_celltype_v019_2=CL:0000540,3.36e-10,33;CL:0000047,3.36e-10,33;CL:0000031,3.36e-10,33;CL:0000404,3.36e-10,33;CL:0000393,1.48e-08,39;CL:0000211,1.48e-08,39;CL:0000107,2.33e-08,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000153!5.87e-12!94;UBERON:0007811!6.06e-12!86;UBERON:0001017!2.60e-09!73;UBERON:0005743!2.60e-09!73;UBERON:0000073!1.93e-08!75;UBERON:0001016!1.93e-08!75;UBERON:0002346!3.35e-08!71;UBERON:0003075!3.35e-08!71;UBERON:0007284!3.35e-08!71;UBERON:0004121!3.95e-08!102;UBERON:0000924!3.95e-08!102;UBERON:0006601!3.95e-08!102;UBERON:0002370!6.45e-07!23;UBERON:0000974!6.45e-07!23;UBERON:0004807!6.45e-07!23;UBERON:0005058!6.45e-07!23;UBERON:0003351!6.45e-07!23;UBERON:0009113!6.45e-07!23;UBERON:0003295!6.45e-07!23;UBERON:0009722!6.45e-07!23;UBERON:0005562!6.45e-07!23;UBERON:0007690!6.45e-07!23;UBERON:0002410!7.71e-07!9;UBERON:0006562!8.15e-07!24;UBERON:0001557!8.15e-07!24;UBERON:0001042!8.15e-07!24;UBERON:0008814!8.15e-07!24;UBERON:0009145!8.15e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0007811,1.02e-10,36;UBERON:0001017,3.77e-09,73;UBERON:0002370,4.04e-09,23;UBERON:0000974,4.04e-09,23;UBERON:0004807,4.04e-09,23;UBERON:0005058,4.04e-09,23;UBERON:0003351,4.04e-09,23;UBERON:0009113,4.04e-09,23;UBERON:0003295,4.04e-09,23;UBERON:0009722,4.04e-09,23;UBERON:0005562,4.04e-09,23;UBERON:0007690,4.04e-09,23;UBERON:0002346,6.34e-09,64;UBERON:0003075,6.34e-09,64;UBERON:0007284,6.34e-09,64;UBERON:0004177,9.22e-09,29;UBERON:0005057,9.22e-09,29;UBERON:0004121,1.33e-08,95;UBERON:0000924,1.33e-08,95;UBERON:0006601,1.33e-08,95;UBERON:0001016,1.67e-08,75;UBERON:0006562,1.99e-08,24;UBERON:0003408,1.99e-08,24;UBERON:0001557,1.99e-08,24;UBERON:0001042,1.99e-08,24;UBERON:0008814,1.99e-08,24;UBERON:0009145,1.99e-08,24;UBERON:0000153,2.02e-08,43;UBERON:0002410,2.33e-08,9;UBERON:0000077,9.96e-07,35|phase1_expression=0.640595388419176,0,0,0,0,0,0,0.387369970324729,1.267098499365,1.87251621057595,0.171217968225505,0.319088635981346,1.54080656938085,1.92324885321794,0.666219523631325,1.01237633694913,0.699561878128147,1.57731082679119,1.64537320326887,0.84877930359606,0.255129870453209,6.7517846816602,4.4403964153619,0.47997726838022,0.45881856213434,0,0,0.215471232685889,0,0,0,1.27006134691926,0,0,0,0,0.204169356262369,0.418531630736908,0,0,0,0.683045484958446,0,1.88845226963366,1.31790010585369,0.367093504323363,0,0.218025156380447,0.219686182734472,0.58328969722285,0.55994568650145,0,0.167782606057736,0.725362142011344,0.672187598284928,0,0,0,3.23706337375356,5.81890077199236,0.633831403506179,0.338844532069132,0,0,0,0,0,1.53687322128622,2.17748185847803,1.21505344498522,0.841299845405528,3.14216082844184,1.98781686856452,4.28717797252339,3.45043695665651,1.83843757322004,1.10115880999389,0.893811366596314,1.22885226604995,2.76961204233407,2.28719109006024,2.6045668527838,0.558365998002762,0,0.916789486660861,2.65165726926301,3.84403538157578,2.23679334990361,0.227178579999552,0.151143120213571,2.6087803983151,0,0,0,0,0.448026887097336,0.702222100658759,0.511290967734173,0,0.35333957451034,1.54927761754349,2.56652954828636,2.54805239706646,0,0,0,0.505524445014783,0.68510327831436,4.91981978929626,0.445326417194474,1.04091196059682,0.608930956624282,1.15307748628029,0.60289056221049,0.705532242814229,0.502666365318702,0.247194967734374,0.722996784599558,0.884610551949874,1.13236794963186,0.662524555381181,0.969750506270444,0,4.09893115816166,4.1889341362691,0.510914110417183,1.07833612055328,1.19980546198682,2.54140454146129,2.24685959107234,0.915001205637253,5.27748278874031,2.08589184230732,1.79000820131231,2.0778804455956,2.43361894601636,0.407357455401265,0.746441823660558,0,1.05220927943237,1.69156575851515,2.06911893990126,2.34080768746954,2.26057226753573,2.85753296435577,2.69038812598185,2.62364828767241,1.29351685369508,0.862271971731369,0.567318240503458,1.58356011747554,1.09597866213787,0.834141747676794,0.348252166522167,0.61734640922383,0.398068533636986,0,0.51469581422943,0.568326998791185,0.621377317606506,0.938104239924385,1.62055855314913,1.89395788468168,0.196764231747404,0.617068451549513,0.465067889500816,0.268273401399619,1.28441876603886,0.658239399653922,0.492502392237286,0.324275238183423,0.438599962275997,0.658650345873152,0.134206418760372,0.630869845692382,2.98423375899925,0.991256348951394,0,0.639864751605702,0.464473343720877,0.644337306610467,0.605050573870028,0.22237804384487,0,0.949058123089023,0.164698954724011,0.502670417600539,0.596869416123452,0.19496408711912,0,0.216138049874694,0.199141273254367,0.758671603812327,2.17072173958485,1.1270773567308,0.610953983535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| ||
|EntrezGene=319758 | |||
|HGNC= | |||
|UniProt=F8VPJ6 | |||
|association_with_transcript=0bp_to_ENSMUST00000163401_5end | |||
|description=CAGE_peak_3_at_Rfx7_5end | |||
|id=chr9:72380594..72380635,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.90e-10!33;CL:0000047!9.90e-10!33;CL:0000031!9.90e-10!33;CL:0000404!9.90e-10!33;CL:0000393!3.13e-07!39;CL:0000211!3.13e-07!39;CL:0000107!7.71e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.36e-10,33;CL:0000047,3.36e-10,33;CL:0000031,3.36e-10,33;CL:0000404,3.36e-10,33;CL:0000393,1.48e-08,39;CL:0000211,1.48e-08,39;CL:0000107,2.33e-08,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!5.87e-12!94;UBERON:0007811!6.06e-12!86;UBERON:0001017!2.60e-09!73;UBERON:0005743!2.60e-09!73;UBERON:0000073!1.93e-08!75;UBERON:0001016!1.93e-08!75;UBERON:0002346!3.35e-08!71;UBERON:0003075!3.35e-08!71;UBERON:0007284!3.35e-08!71;UBERON:0004121!3.95e-08!102;UBERON:0000924!3.95e-08!102;UBERON:0006601!3.95e-08!102;UBERON:0002370!6.45e-07!23;UBERON:0000974!6.45e-07!23;UBERON:0004807!6.45e-07!23;UBERON:0005058!6.45e-07!23;UBERON:0003351!6.45e-07!23;UBERON:0009113!6.45e-07!23;UBERON:0003295!6.45e-07!23;UBERON:0009722!6.45e-07!23;UBERON:0005562!6.45e-07!23;UBERON:0007690!6.45e-07!23;UBERON:0002410!7.71e-07!9;UBERON:0006562!8.15e-07!24;UBERON:0001557!8.15e-07!24;UBERON:0001042!8.15e-07!24;UBERON:0008814!8.15e-07!24;UBERON:0009145!8.15e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007811,1.02e-10,36;UBERON:0001017,3.77e-09,73;UBERON:0002370,4.04e-09,23;UBERON:0000974,4.04e-09,23;UBERON:0004807,4.04e-09,23;UBERON:0005058,4.04e-09,23;UBERON:0003351,4.04e-09,23;UBERON:0009113,4.04e-09,23;UBERON:0003295,4.04e-09,23;UBERON:0009722,4.04e-09,23;UBERON:0005562,4.04e-09,23;UBERON:0007690,4.04e-09,23;UBERON:0002346,6.34e-09,64;UBERON:0003075,6.34e-09,64;UBERON:0007284,6.34e-09,64;UBERON:0004177,9.22e-09,29;UBERON:0005057,9.22e-09,29;UBERON:0004121,1.33e-08,95;UBERON:0000924,1.33e-08,95;UBERON:0006601,1.33e-08,95;UBERON:0001016,1.67e-08,75;UBERON:0006562,1.99e-08,24;UBERON:0003408,1.99e-08,24;UBERON:0001557,1.99e-08,24;UBERON:0001042,1.99e-08,24;UBERON:0008814,1.99e-08,24;UBERON:0009145,1.99e-08,24;UBERON:0000153,2.02e-08,43;UBERON:0002410,2.33e-08,9;UBERON:0000077,9.96e-07,35 | |||
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| |||
|short_description=p3@Rfx7 | |||
}} |
Revision as of 18:42, 14 September 2013
Short description: | p3@Rfx7 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rfx7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000163401_5end |
EntrezGene: | Rfx7 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.36e-10 | 33 |
neuronal stem cell | 3.36e-10 | 33 |
neuroblast | 3.36e-10 | 33 |
electrically signaling cell | 3.36e-10 | 33 |
electrically responsive cell | 1.48e-08 | 39 |
electrically active cell | 1.48e-08 | 39 |
autonomic neuron | 2.33e-08 | 9 |
Ontology term | p-value | n |
---|---|---|
craniocervical region | 1.02e-10 | 36 |
central nervous system | 3.77e-09 | 73 |
thymus | 4.04e-09 | 23 |
neck | 4.04e-09 | 23 |
respiratory system epithelium | 4.04e-09 | 23 |
hemolymphoid system gland | 4.04e-09 | 23 |
pharyngeal epithelium | 4.04e-09 | 23 |
thymic region | 4.04e-09 | 23 |
pharyngeal gland | 4.04e-09 | 23 |
entire pharyngeal arch endoderm | 4.04e-09 | 23 |
thymus primordium | 4.04e-09 | 23 |
early pharyngeal endoderm | 4.04e-09 | 23 |
neurectoderm | 6.34e-09 | 64 |
neural plate | 6.34e-09 | 64 |
presumptive neural plate | 6.34e-09 | 64 |
hemopoietic organ | 9.22e-09 | 29 |
immune organ | 9.22e-09 | 29 |
ectoderm-derived structure | 1.33e-08 | 95 |
ectoderm | 1.33e-08 | 95 |
presumptive ectoderm | 1.33e-08 | 95 |
nervous system | 1.67e-08 | 75 |
pharynx | 1.99e-08 | 24 |
gland of gut | 1.99e-08 | 24 |
upper respiratory tract | 1.99e-08 | 24 |
chordate pharynx | 1.99e-08 | 24 |
pharyngeal arch system | 1.99e-08 | 24 |
pharyngeal region of foregut | 1.99e-08 | 24 |
anterior region of body | 2.02e-08 | 43 |
autonomic nervous system | 2.33e-08 | 9 |
mixed endoderm/mesoderm-derived structure | 9.96e-07 | 35 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.