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{{Coexpression_clusters
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antigen binding!0.0159874021678765!6976;6955$GO:0042287!MHC protein binding!0.0159874021678765!6976;6955$GO:0007585!respiratory gaseous exchange!0.0170655740479378!30012;1080$GO:0001764!neuron migration!0.0198090540169359!30012;1080$GO:0005224!ATP-binding and phosphorylation-dependent chloride channel activity!0.0331729983401609!1080$GO:0005260!channel-conductance-controlling ATPase activity!0.0331729983401609!1080$GO:0006955!immune response!0.0331729983401609!6976;913;910;51744;51561$GO:0006968!cellular defense 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|full_id=C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel
|gostat_on_coexpression_clusters=GO:0042605!peptide antigen binding!0.0159874021678765!6976;6955$GO:0042287!MHC protein binding!0.0159874021678765!6976;6955$GO:0007585!respiratory gaseous exchange!0.0170655740479378!30012;1080$GO:0001764!neuron migration!0.0198090540169359!30012;1080$GO:0005224!ATP-binding and phosphorylation-dependent chloride channel activity!0.0331729983401609!1080$GO:0005260!channel-conductance-controlling ATPase activity!0.0331729983401609!1080$GO:0006955!immune response!0.0331729983401609!6976;913;910;51744;51561$GO:0006968!cellular defense response!0.0396488492130839!51744;6955
|id=C46
|kegg_enrichment=hsa04640;Hematopoietic_cell_lineage;1.36E-06
|ontology_enrichment_celltype=CL:0000738!1.71e-34!140;CL:0000037!1.58e-32!172;CL:0000566!1.58e-32!172;CL:0000988!8.30e-31!182;CL:0002032!1.40e-29!165;CL:0000837!1.40e-29!165;CL:0002087!1.12e-27!119;CL:0002031!1.04e-26!124;CL:0000542!8.45e-16!53;CL:0000051!8.45e-16!53;CL:0000084!1.37e-15!25;CL:0000827!1.37e-15!25;CL:0000838!2.59e-15!52;CL:0000766!2.79e-14!76;CL:0000763!3.66e-14!112;CL:0000049!3.66e-14!112;CL:0000791!2.28e-12!18;CL:0000789!2.28e-12!18;CL:0002420!2.28e-12!18;CL:0002419!2.28e-12!18;CL:0000790!2.28e-12!18;CL:0000557!7.99e-12!71;CL:0002009!1.25e-11!65;CL:0000860!1.73e-11!45;CL:0000839!2.82e-11!70;CL:0002194!5.84e-11!63;CL:0000576!5.84e-11!63;CL:0000040!5.84e-11!63;CL:0000559!5.84e-11!63;CL:0002057!8.25e-11!42;CL:0000625!2.25e-08!11
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002390!1.01e-17!102;UBERON:0003061!1.01e-17!102;UBERON:0007023!3.18e-16!115;UBERON:0002193!1.88e-15!112;UBERON:0000178!1.67e-09!15;UBERON:0000179!1.67e-09!15;UBERON:0000463!1.67e-09!15;UBERON:0002371!1.46e-08!80;UBERON:0002405!2.24e-07!115;UBERON:0001474!4.72e-07!86
}}

Latest revision as of 10:17, 17 September 2013


Full id: C46_acute_Hodgkin_thymus_CD8_chronic_CD4_merkel



Phase1 CAGE Peaks

Hg19::chr10:128935860..128935868,+p3@BC152483
p3@BC152484
Hg19::chr10:128935881..128935890,+p4@BC152483
p4@BC152484
Hg19::chr10:128936005..128936009,+p5@BC152483
p5@BC152484
Hg19::chr10:128936021..128936049,+p1@BC152483
p1@BC152484
Hg19::chr10:128936051..128936062,+p2@BC152483
p2@BC152484
Hg19::chr10:129136223..129136235,+p@chr10:129136223..129136235
+
Hg19::chr10:129136238..129136254,+p@chr10:129136238..129136254
+
Hg19::chr10:129136274..129136285,+p@chr10:129136274..129136285
+
Hg19::chr10:129136821..129136824,+p@chr10:129136821..129136824
+
Hg19::chr10:292574..292612,+p@chr10:292574..292612
+
Hg19::chr10:73638214..73638223,-p@chr10:73638214..73638223
-
Hg19::chr10:73638280..73638322,-p@chr10:73638280..73638322
-
Hg19::chr11:112170529..112170557,+p@chr11:112170529..112170557
+
Hg19::chr11:114757673..114757682,-p@chr11:114757673..114757682
-
Hg19::chr11:114757712..114757717,-p@chr11:114757712..114757717
-
Hg19::chr11:115262470..115262485,-p@chr11:115262470..115262485
-
Hg19::chr11:115262496..115262505,-p@chr11:115262496..115262505
-
Hg19::chr11:134597294..134597304,-p@chr11:134597294..134597304
-
Hg19::chr11:32614011..32614012,+p@chr11:32614011..32614012
+
Hg19::chr11:93141281..93141291,+p@chr11:93141281..93141291
+
Hg19::chr12:103887303..103887334,-p@chr12:103887303..103887334
-
Hg19::chr12:3834599..3834613,-p@chr12:3834599..3834613
-
Hg19::chr12:46601061..46601068,-p65@SLC38A1
Hg19::chr12:46601088..46601093,-p67@SLC38A1
Hg19::chr12:46601114..46601120,-p69@SLC38A1
Hg19::chr12:46601131..46601142,-p45@SLC38A1
Hg19::chr13:105493679..105493695,-p@chr13:105493679..105493695
-
Hg19::chr13:105493716..105493723,-p@chr13:105493716..105493723
-
Hg19::chr13:49220471..49220482,+p@chr13:49220471..49220482
+
Hg19::chr13:51381867..51381876,+p4@uc001vey.2
Hg19::chr13:51382635..51382643,+p@chr13:51382635..51382643
+
Hg19::chr13:67588658..67588680,-p@chr13:67588658..67588680
-
Hg19::chr13:67621642..67621674,-p@chr13:67621642..67621674
-
Hg19::chr14:100541182..100541217,-p1@ENST00000554245
Hg19::chr14:22217327..22217347,+p3@uc010aiq.1
p3@uc010tmf.1
Hg19::chr14:22217349..22217370,+p1@uc010aiq.1
p1@uc010tmf.1
Hg19::chr14:22217386..22217400,+p4@uc010aiq.1
p4@uc010tmf.1
Hg19::chr14:22217405..22217431,+p2@uc010aiq.1
p2@uc010tmf.1
Hg19::chr14:22217432..22217439,+p2@TRAV5
Hg19::chr14:22217447..22217456,+p1@TRAV5
Hg19::chr14:22217797..22217804,+p1@U39105
Hg19::chr14:22217929..22217946,+p1@Z22965
Hg19::chr14:22443352..22443373,+p@chr14:22443352..22443373
+
Hg19::chr14:22443396..22443407,+p@chr14:22443396..22443407
+
Hg19::chr14:22471301..22471322,+p2@TRAV18
Hg19::chr14:22471348..22471353,+p4@TRAV18
Hg19::chr14:22475742..22475766,+p1@TRAV19
Hg19::chr14:22475767..22475787,+p1@uc001wcu.3
Hg19::chr14:22476333..22476338,+p2@AF326716
Hg19::chr14:23012123..23012165,+p1@uc001wgk.2
Hg19::chr14:23017196..23017207,+p@chr14:23017196..23017207
+
Hg19::chr14:23017215..23017233,+p@chr14:23017215..23017233
+
Hg19::chr14:23017300..23017308,+p@chr14:23017300..23017308
+
Hg19::chr14:23017430..23017460,+p@chr14:23017430..23017460
+
Hg19::chr14:54235834..54235839,-p@chr14:54235834..54235839
-
Hg19::chr14:54235844..54235851,-p@chr14:54235844..54235851
-
Hg19::chr14:54235896..54235906,-p@chr14:54235896..54235906
-
Hg19::chr14:98185602..98185614,-p@chr14:98185602..98185614
-
Hg19::chr14:98185616..98185624,-p@chr14:98185616..98185624
-
Hg19::chr14:98185629..98185632,-p@chr14:98185629..98185632
-
Hg19::chr14:98552886..98552912,-p@chr14:98552886..98552912
-
Hg19::chr14:98558220..98558222,-p@chr14:98558220..98558222
-
Hg19::chr14:98582132..98582135,-p@chr14:98582132..98582135
-
Hg19::chr14:98597420..98597421,-p@chr14:98597420..98597421
-
Hg19::chr14:98632482..98632507,-p@chr14:98632482..98632507
-
Hg19::chr15:100879255..100879268,-p5@ADAMTS17
Hg19::chr15:100879271..100879278,-p8@ADAMTS17
Hg19::chr15:23746846..23746852,+p@chr15:23746846..23746852
+
Hg19::chr15:23749113..23749125,+p@chr15:23749113..23749125
+
Hg19::chr15:23749134..23749145,+p@chr15:23749134..23749145
+
Hg19::chr15:23749181..23749192,+p@chr15:23749181..23749192
+
Hg19::chr15:23749235..23749256,+p@chr15:23749235..23749256
+
Hg19::chr15:23749299..23749326,+p@chr15:23749299..23749326
+
Hg19::chr15:23763898..23763901,+p@chr15:23763898..23763901
+
Hg19::chr15:23765572..23765574,+p@chr15:23765572..23765574
+
Hg19::chr15:23770128..23770131,+p@chr15:23770128..23770131
+
Hg19::chr15:23811479..23811497,+p@chr15:23811479..23811497
+
Hg19::chr15:23811505..23811523,+p@chr15:23811505..23811523
+
Hg19::chr15:23811537..23811553,+p@chr15:23811537..23811553
+
Hg19::chr15:23811691..23811700,+p@chr15:23811691..23811700
+
Hg19::chr15:23814475..23814483,-p@chr15:23814475..23814483
-
Hg19::chr15:92069837..92069858,+p@chr15:92069837..92069858
+
Hg19::chr15:99551018..99551022,-p1@PGPEP1L
Hg19::chr16:12599618..12599620,-p@chr16:12599618..12599620
-
Hg19::chr16:12662158..12662161,-p@chr16:12662158..12662161
-
Hg19::chr16:12678256..12678261,-p@chr16:12678256..12678261
-
Hg19::chr16:12680919..12680923,-p@chr16:12680919..12680923
-
Hg19::chr16:12684870..12684876,-p@chr16:12684870..12684876
-
Hg19::chr16:12700714..12700723,-p@chr16:12700714..12700723
-
Hg19::chr16:12713150..12713164,-p@chr16:12713150..12713164
-
Hg19::chr16:12713598..12713613,-p@chr16:12713598..12713613
-
Hg19::chr16:63070860..63070875,+p@chr16:63070860..63070875
+
Hg19::chr16:63074020..63074025,+p@chr16:63074020..63074025
+
Hg19::chr16:68402140..68402168,-p@chr16:68402140..68402168
-
Hg19::chr16:70726869..70726883,-p@chr16:70726869..70726883
-
Hg19::chr16:72258240..72258247,-p@chr16:72258240..72258247
-
Hg19::chr16:72258248..72258258,-p@chr16:72258248..72258258
-
Hg19::chr17:54876375..54876389,-p@chr17:54876375..54876389
-
Hg19::chr17:66342972..66342979,+p2@AK298668
Hg19::chr17:67997853..67997859,+p@chr17:67997853..67997859
+
Hg19::chr18:10322232..10322239,-p@chr18:10322232..10322239
-
Hg19::chr18:10322262..10322265,-p@chr18:10322262..10322265
-
Hg19::chr18:10322282..10322296,-p@chr18:10322282..10322296
-
Hg19::chr18:10322301..10322307,-p@chr18:10322301..10322307
-
Hg19::chr18:12763760..12763764,-p@chr18:12763760..12763764
-
Hg19::chr18:12776132..12776137,-p1@BC065363
Hg19::chr18:683448..683456,-p@chr18:683448..683456
-
Hg19::chr18:76433212..76433221,+p@chr18:76433212..76433221
+
Hg19::chr18:76433242..76433250,+p@chr18:76433242..76433250
+
Hg19::chr18:76438175..76438184,-p@chr18:76438175..76438184
-
Hg19::chr18:76438197..76438205,-p@chr18:76438197..76438205
-
Hg19::chr18:76438317..76438324,-p@chr18:76438317..76438324
-
Hg19::chr18:76694029..76694036,-p@chr18:76694029..76694036
-
Hg19::chr18:76694066..76694072,-p@chr18:76694066..76694072
-
Hg19::chr18:76694733..76694740,-p@chr18:76694733..76694740
-
Hg19::chr18:76694749..76694754,-p@chr18:76694749..76694754
-
Hg19::chr18:76694765..76694776,-p@chr18:76694765..76694776
-
Hg19::chr18:76694782..76694794,-p@chr18:76694782..76694794
-
Hg19::chr18:76694797..76694808,-p@chr18:76694797..76694808
-
Hg19::chr18:76699951..76699988,-p@chr18:76699951..76699988
-
Hg19::chr19:47998825..47998895,-p@chr19:47998825..47998895
-
Hg19::chr1:1078352..1078360,-p@chr1:1078352..1078360
-
Hg19::chr1:116213626..116213637,+p5@VANGL1
Hg19::chr1:116213646..116213662,+p4@VANGL1
Hg19::chr1:116213713..116213720,+p10@VANGL1
Hg19::chr1:116213741..116213752,+p9@VANGL1
Hg19::chr1:154720589..154720602,-p@chr1:154720589..154720602
-
Hg19::chr1:156933227..156933271,-p@chr1:156933227..156933271
-
Hg19::chr1:158301000..158301009,-p14@CD1B
Hg19::chr1:158301019..158301040,-p7@CD1B
Hg19::chr1:158301762..158301767,-p16@CD1B
Hg19::chr1:158301806..158301818,-p15@CD1B
Hg19::chr1:158322941..158322963,+p20@CD1E
Hg19::chr1:158323055..158323063,+p28@CD1E
Hg19::chr1:158323158..158323175,+p13@CD1E
Hg19::chr1:158323183..158323188,+p21@CD1E
Hg19::chr1:158323215..158323229,+p18@CD1E
Hg19::chr1:158323244..158323269,+p3@CD1E
Hg19::chr1:158323271..158323294,+p7@CD1E
Hg19::chr1:158323296..158323301,+p17@CD1E
Hg19::chr1:158323304..158323324,+p9@CD1E
Hg19::chr1:158323344..158323347,+p35@CD1E
Hg19::chr1:158323376..158323381,+p24@CD1E
Hg19::chr1:158323491..158323497,+p25@CD1E
Hg19::chr1:160808812..160808826,-p7@CD244
Hg19::chr1:160808905..160808910,-p11@CD244
Hg19::chr1:16477916..16477925,-p@chr1:16477916..16477925
-
Hg19::chr1:208252658..208252675,-p@chr1:208252658..208252675
-
Hg19::chr1:213541658..213541671,+p@chr1:213541658..213541671
+
Hg19::chr1:223374979..223375023,+p@chr1:223374979..223375023
+
Hg19::chr1:223403556..223403561,-p@chr1:223403556..223403561
-
Hg19::chr1:223537283..223537286,-p6@SUSD4
Hg19::chr1:229290455..229290475,-p@chr1:229290455..229290475
-
Hg19::chr1:27953149..27953152,-p18@FGR
Hg19::chr1:39794062..39794114,+p14@MACF1
Hg19::chr1:62751972..62751982,-p@chr1:62751972..62751982
-
Hg19::chr1:62751988..62751993,-p@chr1:62751988..62751993
-
Hg19::chr1:62752000..62752009,-p@chr1:62752000..62752009
-
Hg19::chr1:62752366..62752399,-p@chr1:62752366..62752399
-
Hg19::chr1:62752796..62752803,-p@chr1:62752796..62752803
-
Hg19::chr1:62752840..62752853,-p@chr1:62752840..62752853
-
Hg19::chr1:62752965..62752973,-p@chr1:62752965..62752973
-
Hg19::chr1:62753005..62753022,-p@chr1:62753005..62753022
-
Hg19::chr1:62753026..62753036,-p@chr1:62753026..62753036
-
Hg19::chr1:62753080..62753090,-p@chr1:62753080..62753090
-
Hg19::chr1:62753095..62753101,-p@chr1:62753095..62753101
-
Hg19::chr1:62753200..62753205,-p@chr1:62753200..62753205
-
Hg19::chr20:42574261..42574270,+p14@TOX2
Hg19::chr20:42574317..42574328,+p12@TOX2
Hg19::chr20:43302648..43302652,-p@chr20:43302648..43302652
-
Hg19::chr20:43947701..43947735,-p@chr20:43947701..43947735
-
Hg19::chr20:56233042..56233052,+p@chr20:56233042..56233052
+
Hg19::chr20:56233080..56233085,+p@chr20:56233080..56233085
+
Hg19::chr20:56234638..56234653,-p@chr20:56234638..56234653
-
Hg19::chr20:56234717..56234758,-p@chr20:56234717..56234758
-
Hg19::chr20:56512403..56512431,+p@chr20:56512403..56512431
+
Hg19::chr20:56513778..56513804,-p@chr20:56513778..56513804
-
Hg19::chr20:56747231..56747236,-p@chr20:56747231..56747236
-
Hg19::chr20:56747253..56747266,-p@chr20:56747253..56747266
-
Hg19::chr20:56747268..56747273,-p@chr20:56747268..56747273
-
Hg19::chr20:61639397..61639409,+p@chr20:61639397..61639409
+
Hg19::chr20:61915536..61915555,-p@chr20:61915536..61915555
-
Hg19::chr21:40262840..40262846,-p@chr21:40262840..40262846
-
Hg19::chr21:40296492..40296522,+p@chr21:40296492..40296522
+
Hg19::chr21:46993733..46993745,-p@chr21:46993733..46993745
-
Hg19::chr21:46993783..46993791,-p@chr21:46993783..46993791
-
Hg19::chr21:46994123..46994132,-p@chr21:46994123..46994132
-
Hg19::chr21:46994152..46994163,-p@chr21:46994152..46994163
-
Hg19::chr21:46994182..46994193,-p@chr21:46994182..46994193
-
Hg19::chr22:42780663..42780702,-p1@AB489188
Hg19::chr22:47853981..47853989,+p@chr22:47853981..47853989
+
Hg19::chr22:49994693..49994722,-p@chr22:49994693..49994722
-
Hg19::chr2:112385033..112385044,-p@chr2:112385033..112385044
-
Hg19::chr2:112460023..112460033,+p@chr2:112460023..112460033
+
Hg19::chr2:112463407..112463420,-p@chr2:112463407..112463420
-
Hg19::chr2:112463437..112463455,-p@chr2:112463437..112463455
-
Hg19::chr2:112466038..112466067,-p@chr2:112466038..112466067
-
Hg19::chr2:112466098..112466104,-p@chr2:112466098..112466104
-
Hg19::chr2:112466116..112466123,-p@chr2:112466116..112466123
-
Hg19::chr2:136577820..136577843,+p2@LOC100507600
Hg19::chr2:136577861..136577876,+p1@LOC100507600
Hg19::chr2:213405613..213405619,-p@chr2:213405613..213405619
-
Hg19::chr2:220478444..220478454,+p6@STK11IP
Hg19::chr2:220478459..220478466,+p10@STK11IP
Hg19::chr2:98341540..98341544,+p@chr2:98341540..98341544
+
Hg19::chr2:98341570..98341580,+p@chr2:98341570..98341580
+
Hg19::chr2:98341597..98341614,+p@chr2:98341597..98341614
+
Hg19::chr3:133209792..133209807,-p4@AK128281
Hg19::chr3:133209865..133209876,-p3@AK128281
Hg19::chr3:18058090..18058098,+p@chr3:18058090..18058098
+
Hg19::chr3:195869677..195869694,+p1@uc011btt.1
Hg19::chr3:45957088..45957099,-p3@LZTFL1
Hg19::chr4:136809271..136809276,-p1@ENST00000504365
Hg19::chr4:151246994..151247003,-p@chr4:151246994..151247003
-
Hg19::chr4:151247006..151247026,-p@chr4:151247006..151247026
-
Hg19::chr4:169433223..169433234,+p@chr4:169433223..169433234
+
Hg19::chr4:187518318..187518321,-p53@FAT1
Hg19::chr4:187518341..187518353,-p23@FAT1
Hg19::chr4:187518373..187518386,-p17@FAT1
Hg19::chr4:187518389..187518415,-p6@FAT1
Hg19::chr4:187518454..187518463,-p42@FAT1
Hg19::chr4:187519913..187519927,-p49@FAT1
Hg19::chr4:187519949..187519954,-p57@FAT1
Hg19::chr4:187520011..187520021,-p55@FAT1
Hg19::chr4:187520022..187520033,-p46@FAT1
Hg19::chr4:187524184..187524218,-p@chr4:187524184..187524218
-
Hg19::chr4:187524311..187524339,+p@chr4:187524311..187524339
+
Hg19::chr4:187525346..187525358,-p@chr4:187525346..187525358
-
Hg19::chr4:187549370..187549410,-p@chr4:187549370..187549410
-
Hg19::chr4:187555917..187555924,-p@chr4:187555917..187555924
-
Hg19::chr4:187556003..187556008,-p@chr4:187556003..187556008
-
Hg19::chr4:8231056..8231071,+p@chr4:8231056..8231071
+
Hg19::chr4:8231295..8231305,+p@chr4:8231295..8231305
+
Hg19::chr4:8231597..8231598,+p@chr4:8231597..8231598
+
Hg19::chr4:8237045..8237052,+p@chr4:8237045..8237052
+
Hg19::chr4:8237151..8237165,+p@chr4:8237151..8237165
+
Hg19::chr4:8237859..8237898,+p@chr4:8237859..8237898
+
Hg19::chr4:8238051..8238066,+p@chr4:8238051..8238066
+
Hg19::chr4:8238072..8238081,+p@chr4:8238072..8238081
+
Hg19::chr4:8238101..8238108,+p@chr4:8238101..8238108
+
Hg19::chr5:1319245..1319263,+p@chr5:1319245..1319263
+
Hg19::chr5:133434873..133434880,-p@chr5:133434873..133434880
-
Hg19::chr5:133434881..133434886,-p@chr5:133434881..133434886
-
Hg19::chr5:170736075..170736095,-p2@ENST00000528269
Hg19::chr5:170736216..170736238,+p2@TLX3
Hg19::chr5:170736243..170736279,+p1@TLX3
Hg19::chr5:170737544..170737590,+p@chr5:170737544..170737590
+
Hg19::chr5:4420527..4420531,-p@chr5:4420527..4420531
-
Hg19::chr5:964466..964498,+p@chr5:964466..964498
+
Hg19::chr6:14783362..14783368,-p@chr6:14783362..14783368
-
Hg19::chr6:150311074..150311087,+p@chr6:150311074..150311087
+
Hg19::chr6:2900763..2900776,-p4@SERPINB9
Hg19::chr6:31254912..31254928,-p@chr6:31254912..31254928
-
Hg19::chr6:53171264..53171301,-p@chr6:53171264..53171301
-
Hg19::chr6:53227601..53227602,-p@chr6:53227601..53227602
-
Hg19::chr6:53227638..53227648,-p@chr6:53227638..53227648
-
Hg19::chr7:117232436..117232445,+p8@CFTR
Hg19::chr7:117232482..117232495,+p4@CFTR
Hg19::chr7:117232504..117232529,+p3@CFTR
Hg19::chr7:117232534..117232548,+p6@CFTR
Hg19::chr7:117232554..117232568,+p2@CFTR
Hg19::chr7:117232665..117232671,+p@chr7:117232665..117232671
+
Hg19::chr7:133164387..133164423,+p15@EXOC4
Hg19::chr7:133164510..133164521,+p@chr7:133164510..133164521
+
Hg19::chr7:133164822..133164834,+p@chr7:133164822..133164834
+
Hg19::chr7:133168659..133168665,-p@chr7:133168659..133168665
-
Hg19::chr7:133168666..133168676,-p@chr7:133168666..133168676
-
Hg19::chr7:133168690..133168710,-p@chr7:133168690..133168710
-
Hg19::chr7:133286484..133286491,+p8@EXOC4
Hg19::chr7:133286534..133286545,+p5@EXOC4
Hg19::chr7:133286547..133286549,+p17@EXOC4
Hg19::chr7:133286564..133286576,+p4@EXOC4
Hg19::chr7:133286584..133286619,+p2@EXOC4
Hg19::chr7:133286621..133286630,+p11@EXOC4
Hg19::chr7:133286674..133286679,+p20@EXOC4
Hg19::chr7:142149018..142149052,-p1@AY848703
Hg19::chr7:142149108..142149111,-p2@AY848703
Hg19::chr7:142149122..142149140,-p1@M13551
p1@M14299
Hg19::chr7:142149144..142149156,-p2@M13551
p2@M14299
Hg19::chr7:142149275..142149314,-p3@M13551
p3@M14299
Hg19::chr7:142149390..142149421,-p1@TRBV5-5
Hg19::chr7:142149456..142149466,-p1@uc010lnw.1
Hg19::chr7:142149587..142149629,-p2@uc010lnw.1
Hg19::chr7:142149639..142149653,-p3@uc010lnw.1
Hg19::chr7:142149694..142149701,-p4@uc010lnw.1
Hg19::chr7:142150123..142150133,-p@chr7:142150123..142150133
-
Hg19::chr7:142150167..142150175,-p@chr7:142150167..142150175
-
Hg19::chr7:142168871..142168878,-p2@uc011kry.1
Hg19::chr7:142176831..142176842,-p1@TRBV7-4
Hg19::chr7:142247229..142247272,-p1@M13852
Hg19::chr7:142247369..142247386,-p3@AB306217
Hg19::chr7:142247402..142247437,-p1@AB306217
Hg19::chr7:142247443..142247449,-p5@AB306217
Hg19::chr7:142247484..142247501,-p2@AB306217
Hg19::chr7:142247564..142247596,-p2@TRBV7-3
Hg19::chr7:142247924..142247929,-p4@TRBV7-3
Hg19::chr7:142259525..142259549,-p1@TRBV5-2
Hg19::chr7:142499314..142499325,+p@chr7:142499314..142499325
+
Hg19::chr7:142499594..142499616,+p@chr7:142499594..142499616
+
Hg19::chr7:155532646..155532671,+p@chr7:155532646..155532671
+
Hg19::chr7:155534653..155534662,+p@chr7:155534653..155534662
+
Hg19::chr7:155534695..155534726,+p@chr7:155534695..155534726
+
Hg19::chr7:155534746..155534757,+p@chr7:155534746..155534757
+
Hg19::chr7:157406696..157406703,-p@chr7:157406696..157406703
-
Hg19::chr7:157406707..157406727,-p@chr7:157406707..157406727
-
Hg19::chr7:157406739..157406744,-p@chr7:157406739..157406744
-
Hg19::chr7:157406751..157406754,-p@chr7:157406751..157406754
-
Hg19::chr7:158808634..158808635,+p@chr7:158808634..158808635
+
Hg19::chr7:158829640..158829649,+p@chr7:158829640..158829649
+
Hg19::chr7:158829655..158829662,+p@chr7:158829655..158829662
+
Hg19::chr7:158829669..158829680,+p@chr7:158829669..158829680
+
Hg19::chr7:158852535..158852540,+p@chr7:158852535..158852540
+
Hg19::chr7:2208099..2208102,+p@chr7:2208099..2208102
+
Hg19::chr7:38398200..38398207,-p1@X04040
Hg19::chr7:38398609..38398625,-p1@uc003tgr.2
Hg19::chr7:38398721..38398737,-p1@TRGV3
Hg19::chr7:49619101..49619107,+p@chr7:49619101..49619107
+
Hg19::chr7:49619112..49619123,+p@chr7:49619112..49619123
+
Hg19::chr7:49619132..49619139,+p@chr7:49619132..49619139
+
Hg19::chr8:127262867..127262874,-p@chr8:127262867..127262874
-
Hg19::chr8:130248938..130248940,+p@chr8:130248938..130248940
+
Hg19::chr8:130253425..130253430,+p@chr8:130253425..130253430
+
Hg19::chr8:130253568..130253573,+p@chr8:130253568..130253573
+
Hg19::chr8:130253587..130253607,+p@chr8:130253587..130253607
+
Hg19::chr8:130428171..130428187,+p1@ENST00000519048
Hg19::chr8:130428190..130428203,+p2@ENST00000519048
Hg19::chr8:130428204..130428209,+p5@ENST00000519048
Hg19::chr8:144543988..144544006,-p@chr8:144543988..144544006
-
Hg19::chr8:144544026..144544036,-p@chr8:144544026..144544036
-
Hg19::chr8:144874777..144874810,-p@chr8:144874777..144874810
-
Hg19::chr8:1897525..1897530,-p@chr8:1897525..1897530
-
Hg19::chr8:1900169..1900170,+p@chr8:1900169..1900170
+
Hg19::chr8:2162891..2162901,+p@chr8:2162891..2162901
+
Hg19::chr8:2752564..2752568,-p@chr8:2752564..2752568
-
Hg19::chr8:2752711..2752716,-p@chr8:2752711..2752716
-
Hg19::chr8:2752740..2752752,-p@chr8:2752740..2752752
-
Hg19::chr8:2752886..2752888,-p@chr8:2752886..2752888
-
Hg19::chr8:2752941..2752946,-p@chr8:2752941..2752946
-
Hg19::chr8:2753014..2753021,-p@chr8:2753014..2753021
-
Hg19::chr8:2753417..2753424,-p@chr8:2753417..2753424
-
Hg19::chr8:2891404..2891430,-p@chr8:2891404..2891430
-
Hg19::chr8:2954660..2954663,-p@chr8:2954660..2954663
-
Hg19::chr8:2970547..2970561,-p8@CSMD1
Hg19::chr8:2970593..2970613,-p9@CSMD1
Hg19::chr8:2970800..2970804,-p38@CSMD1
Hg19::chr8:2970846..2970862,-p18@CSMD1
Hg19::chr8:3008963..3008975,-p@chr8:3008963..3008975
-
Hg19::chr8:3009038..3009050,-p@chr8:3009038..3009050
-
Hg19::chr8:3009111..3009122,-p@chr8:3009111..3009122
-
Hg19::chr8:3009125..3009135,-p@chr8:3009125..3009135
-
Hg19::chr8:3009164..3009174,-p@chr8:3009164..3009174
-
Hg19::chr8:3009182..3009185,-p@chr8:3009182..3009185
-
Hg19::chr8:3009202..3009211,-p@chr8:3009202..3009211
-
Hg19::chr8:3009221..3009227,-p@chr8:3009221..3009227
-
Hg19::chr8:3009231..3009257,-p@chr8:3009231..3009257
-
Hg19::chr8:3009266..3009280,-p@chr8:3009266..3009280
-
Hg19::chr8:3009288..3009296,-p@chr8:3009288..3009296
-
Hg19::chr8:3009313..3009322,-p@chr8:3009313..3009322
-
Hg19::chr8:3009332..3009343,-p@chr8:3009332..3009343
-
Hg19::chr8:3009442..3009449,-p@chr8:3009442..3009449
-
Hg19::chr8:3009468..3009477,-p@chr8:3009468..3009477
-
Hg19::chr8:3009579..3009592,-p@chr8:3009579..3009592
-
Hg19::chr8:3009601..3009610,-p@chr8:3009601..3009610
-
Hg19::chr8:3009630..3009641,-p@chr8:3009630..3009641
-
Hg19::chr8:3009684..3009704,-p@chr8:3009684..3009704
-
Hg19::chr8:3009728..3009733,-p@chr8:3009728..3009733
-
Hg19::chr8:3009736..3009741,-p@chr8:3009736..3009741
-
Hg19::chr8:6323140..6323153,-p@chr8:6323140..6323153
-
Hg19::chr8:6323168..6323179,-p@chr8:6323168..6323179
-
Hg19::chr8:6334788..6334803,+p2@MCPH1
Hg19::chr8:6334891..6334898,+p4@MCPH1
Hg19::chr9:100732622..100732644,+p@chr9:100732622..100732644
+
Hg19::chr9:139482350..139482358,-p@chr9:139482350..139482358
-
Hg19::chr9:139482367..139482372,-p@chr9:139482367..139482372
-
Hg19::chr9:139482373..139482377,-p@chr9:139482373..139482377
-
Hg19::chr9:35617130..35617156,-p@chr9:35617130..35617156
-
Hg19::chr9:35619539..35619544,-p4@CD72
Hg19::chr9:79516808..79516819,-p@chr9:79516808..79516819
-
Hg19::chr9:79516839..79516857,-p@chr9:79516839..79516857
-
Hg19::chr9:79519652..79519664,-p@chr9:79519652..79519664
-
Hg19::chr9:90219251..90219263,+p@chr9:90219251..90219263
+
Hg19::chr9:90219273..90219281,+p@chr9:90219273..90219281
+
Hg19::chr9:96054279..96054289,+p@chr9:96054279..96054289
+
Hg19::chr9:96237680..96237711,+p@chr9:96237680..96237711
+
Hg19::chrX:135180717..135180728,-p3@ENST00000468625
Hg19::chrX:135180729..135180741,-p2@ENST00000468625
Hg19::chrX:19702240..19702252,-p@chrX:19702240..19702252
-
Hg19::chrX:6995412..6995425,-p@chrX:6995412..6995425
-
Hg19::chrX:6995436..6995491,-p@chrX:6995436..6995491
-
Hg19::chrX:6995507..6995515,-p@chrX:6995507..6995515
-
Hg19::chrX:6995572..6995579,-p@chrX:6995572..6995579
-
Hg19::chrX:6996037..6996044,-p@chrX:6996037..6996044
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0042605peptide antigen binding0.0159874021678765
GO:0042287MHC protein binding0.0159874021678765
GO:0007585respiratory gaseous exchange0.0170655740479378
GO:0001764neuron migration0.0198090540169359
GO:0005224ATP-binding and phosphorylation-dependent chloride channel activity0.0331729983401609
GO:0005260channel-conductance-controlling ATPase activity0.0331729983401609
GO:0006955immune response0.0331729983401609
GO:0006968cellular defense response0.0396488492130839



Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br><br><br>

Cell Type
Ontology termp-valuen
T cell2.15e-0925
pro-T cell2.15e-0925


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.10
MA0004.10.910291
MA0006.13.74623e-05
MA0007.11.33492
MA0009.11.89646
MA0014.10
MA0017.10.170318
MA0019.10.187297
MA0024.10.0011258
MA0025.10.0801812
MA0027.10.872187
MA0028.10.000997352
MA0029.10.786537
MA0030.10.260535
MA0031.10.328511
MA0038.10.0366602
MA0040.10.00776818
MA0041.11.10019
MA0042.10.446263
MA0043.10.356159
MA0046.10.491396
MA0048.10.150817
MA0050.10.0363354
MA0051.10.13548
MA0052.10.113934
MA0055.10.00180205
MA0056.10
MA0057.15.14751e-05
MA0058.10.837991
MA0059.10.422091
MA0060.10.142463
MA0061.10.00184875
MA0063.10
MA0066.11.26289
MA0067.10.0239958
MA0068.10.0132016
MA0069.10.0505177
MA0070.14.11592
MA0071.14.07027
MA0072.10.612964
MA0073.11.4959e-08
MA0074.10.133926
MA0076.10.00465886
MA0077.10.409658
MA0078.10.449036
MA0081.10.130724
MA0083.10.76453
MA0084.10.072074
MA0087.10.424842
MA0088.10.000798716
MA0089.10
MA0090.10.145186
MA0091.12.04264
MA0092.10.978829
MA0093.10.907773
MA0095.10
MA0098.10
MA0100.11.62009
MA0101.10.0167334
MA0103.16.26175
MA0105.16.08981e-07
MA0106.10.0762064
MA0107.10.00017729
MA0108.20.00180315
MA0109.10
MA0111.10.313187
MA0113.13.37552
MA0114.10.322774
MA0115.10.0132103
MA0116.10.0742505
MA0117.10.168361
MA0119.10.255691
MA0122.11.01622
MA0124.10.0463261
MA0125.10.965533
MA0130.10
MA0131.10.00118486
MA0132.10
MA0133.10
MA0135.10.629508
MA0136.10.160209
MA0139.10.0380546
MA0140.11.81689
MA0141.12.25663
MA0142.10.0536833
MA0143.10.0172666
MA0144.10.00997596
MA0145.10.0236806
MA0146.16.38106e-11
MA0147.10.00754108
MA0148.10.168225
MA0149.10.000372894
MA0062.20.00290118
MA0035.20.721831
MA0039.20
MA0138.20.59091
MA0002.27.68229
MA0137.20.148818
MA0104.20.000468624
MA0047.20.0194145
MA0112.20.0365577
MA0065.20.129789
MA0150.10.0186896
MA0151.10
MA0152.11.47449
MA0153.10.893914
MA0154.10.00237266
MA0155.16.31329e-06
MA0156.10.963313
MA0157.10.840608
MA0158.10
MA0159.10.587718
MA0160.10.466396
MA0161.10
MA0162.10
MA0163.13.86213e-13
MA0164.10.0417901
MA0080.20.360761
MA0018.20.0126316
MA0099.20.000654673
MA0079.20
MA0102.20.0856234
MA0258.11.29266
MA0259.10.00167207
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

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