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MCL coexpression mm9:85: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001264!8.08e-32!12;UBERON:0002075!1.58e-25!19;UBERON:0005409!2.40e-20!47;UBERON:0002323!1.64e-11!37;UBERON:0004458!1.64e-11!37;UBERON:0003886!4.01e-11!38;UBERON:0000160!9.20e-11!31;UBERON:0002553!9.35e-11!39;UBERON:0000945!1.06e-10!16;UBERON:0010039!1.06e-10!16
|tfbs_overrepresentation_for_novel_motifs=0.0182889,0.0704937,0.351595,0.480667,0.53328,0.258185,0.127235,1.58993,0.491208,0.0264969,0.25437,0.494813,0.0669551,0.0694973,0.510997,0,0.0115339,0.371703,0.605116,1.34363,0.0542658,0.769663,0.0688399,1.37091,0.681665,0.0106756,0.11028,0.199576,0.0562086,0.209109,0.0983043,0.1119,0.268553,0.287625,0.513963,0.00065683,0.00238368,0.109036,1.90181,0.00513361,0.639321,0.182406,0.769877,0.821036,0.0196577,0.0306519,0.18526,0.13703,1.44677,0.568664,0.277307,0.116752,0.846798,0.0636335,0.244771,0.61021,0.360459,0.299563,0.909102,0.00790504,0.244438,0.398249,0.857308,0.259194,0.0836813,0.327193,0.126483,0.344232,0.0962188,0.241646,0.000610017,0.0509162,0.00141466,0.279399,0.101077,0.00353964,1.53199,0.501482,1.41217,0.465029,0.37649,0.169877,0.595349,0.223835,0.0443387,0.0508099,0.150843,0.120013,0.191785,0.470924,0.162354,0.173859,0.288302,0.0445332,0.00243672,0.00302209,1.35818,0.122514,0.0847257,0.374562,0.0125794,0.503503,0.211088,0.278281,0.475594,0.0219636,0.196767,0.690224,0.00610254,0.00513768,0.202222,0.0585589,0.102899,0.0384786,0.498035,1.76268,0.0166475,0.496076,0.153375,0.0221692,1.00428,0.107253,0.184015,0.169459,0.573399,0.0909652,0.0665399,0.278955,0.396328,0.184545,0.433523,0.45149,0.11192,0.459747,1.01206,0.33856,0.240762,1.0284,0.461179,0.793078,0.445101,0.128769,0.524833,0.527061,0.128933,0.00163313,0.00518152,0.756777,0.246976,0.0691202,0.171809,5.20449e-06,0.229136,0.0286804,1.17955,0.0947832,0.00239228,0.73775,0.133996,0.0210963,0.473771,0.168978,1.43224,0.0154232,0.697264,0.159502,0.0237213,0.111298,0.00972179
}}

Latest revision as of 14:39, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:118513215..118513229,-p@chr10:118513215..118513229
-
Mm9::chr10:42660260..42660290,+p@chr10:42660260..42660290
+
Mm9::chr10:77004684..77004711,+p4@Itgb2
Mm9::chr10:93145221..93145232,+p@chr10:93145221..93145232
+
Mm9::chr11:104162667..104162680,-p@chr11:104162667..104162680
-
Mm9::chr11:116355895..116355908,-p4@Prpsap1
Mm9::chr11:116355917..116355946,-p2@Prpsap1
Mm9::chr11:120504603..120504616,-p2@Pycr1
Mm9::chr11:36645195..36645214,-p@chr11:36645195..36645214
-
Mm9::chr11:69806012..69806043,+p@chr11:69806012..69806043
+
Mm9::chr11:72823251..72823300,+p1@P2rx1
Mm9::chr11:74336076..74336095,-p@chr11:74336076..74336095
-
Mm9::chr11:74336100..74336132,-p@chr11:74336100..74336132
-
Mm9::chr11:75739403..75739448,-p1@Rph3al
Mm9::chr12:106999656..106999668,+p@chr12:106999656..106999668
+
Mm9::chr12:110120982..110120989,-p@chr12:110120982..110120989
-
Mm9::chr13:12612644..12612684,-p2@Edaradd
Mm9::chr13:56849328..56849340,+p@chr13:56849328..56849340
+
Mm9::chr13:59680417..59680420,+p@chr13:59680417..59680420
+
Mm9::chr15:100246221..100246232,-p@chr15:100246221..100246232
-
Mm9::chr15:34383040..34383058,+p1@BC030476
Mm9::chr15:34608631..34608647,-p3@Nipal2
Mm9::chr15:52127064..52127100,+p2@Slc30a8
Mm9::chr15:52127197..52127209,+p1@Slc30a8
Mm9::chr15:72760619..72760646,-p@chr15:72760619..72760646
-
Mm9::chr15:72869220..72869245,-p@chr15:72869220..72869245
-
Mm9::chr15:78861279..78861289,+p2@Galr3
p2@Gcat
Mm9::chr15:78861315..78861363,+p1@Galr3
p1@Gcat
Mm9::chr15:78861375..78861382,+p@chr15:78861375..78861382
+
Mm9::chr15:98557961..98557982,-p@chr15:98557961..98557982
-
Mm9::chr15:98557986..98558040,-p@chr15:98557986..98558040
-
Mm9::chr16:11008557..11008586,+p1@Gm4262
Mm9::chr16:93368498..93368512,+p@chr16:93368498..93368512
+
Mm9::chr17:26338250..26338257,-p5@Arhgdig
Mm9::chr17:26338308..26338332,-p3@Arhgdig
Mm9::chr17:26338393..26338437,-p4@Arhgdig
Mm9::chr17:28695756..28695770,+p@chr17:28695756..28695770
+
Mm9::chr17:46727435..46727459,-p@chr17:46727435..46727459
-
Mm9::chr18:17942879..17942880,-p@chr18:17942879..17942880
-
Mm9::chr18:34531496..34531499,-p@chr18:34531496..34531499
-
Mm9::chr18:34532145..34532154,-p@chr18:34532145..34532154
-
Mm9::chr18:34532155..34532177,-p@chr18:34532155..34532177
-
Mm9::chr18:34532967..34533097,-p1@Reep5
Mm9::chr18:39522574..39522590,+p@chr18:39522574..39522590
+
Mm9::chr19:29658540..29658567,+p@chr19:29658540..29658567
+
Mm9::chr19:52338934..52338945,+p1@Ins1
Mm9::chr19:52339440..52339446,-p@chr19:52339440..52339446
-
Mm9::chr19:5394335..5394383,-p1@uc008gcw.1
Mm9::chr19:58803454..58803471,+p1@Pnliprp1
Mm9::chr19:58804381..58804392,+p@chr19:58804381..58804392
+
Mm9::chr19:58804461..58804581,+p@chr19:58804461..58804581
+
Mm9::chr19:58804490..58804507,-p@chr19:58804490..58804507
-
Mm9::chr19:58804543..58804555,-p@chr19:58804543..58804555
-
Mm9::chr19:58804572..58804577,-p@chr19:58804572..58804577
-
Mm9::chr19:58804595..58804623,-p@chr19:58804595..58804623
-
Mm9::chr19:58804956..58805053,+p@chr19:58804956..58805053
+
Mm9::chr19:58804986..58805014,-p@chr19:58804986..58805014
-
Mm9::chr19:58805054..58805072,-p@chr19:58805054..58805072
-
Mm9::chr19:58806508..58806517,+p@chr19:58806508..58806517
+
Mm9::chr19:58806521..58806542,+p@chr19:58806521..58806542
+
Mm9::chr19:58806552..58806584,+p@chr19:58806552..58806584
+
Mm9::chr19:58806590..58806611,+p@chr19:58806590..58806611
+
Mm9::chr19:58807834..58807898,+p@chr19:58807834..58807898
+
Mm9::chr19:58807909..58807926,+p@chr19:58807909..58807926
+
Mm9::chr19:58809149..58809223,+p@chr19:58809149..58809223
+
Mm9::chr19:58809166..58809190,-p@chr19:58809166..58809190
-
Mm9::chr19:58809382..58809441,+p@chr19:58809382..58809441
+
Mm9::chr19:58809429..58809444,-p@chr19:58809429..58809444
-
Mm9::chr19:58811484..58811517,+p@chr19:58811484..58811517
+
Mm9::chr19:58811518..58811535,+p@chr19:58811518..58811535
+
Mm9::chr19:58811529..58811552,-p@chr19:58811529..58811552
-
Mm9::chr19:58811549..58811570,+p@chr19:58811549..58811570
+
Mm9::chr19:58812625..58812746,+p@chr19:58812625..58812746
+
Mm9::chr19:58812793..58812802,+p@chr19:58812793..58812802
+
Mm9::chr19:58812844..58812855,+p@chr19:58812844..58812855
+
Mm9::chr19:58813935..58813941,+p@chr19:58813935..58813941
+
Mm9::chr19:58814931..58814975,+p@chr19:58814931..58814975
+
Mm9::chr19:58814977..58814995,+p@chr19:58814977..58814995
+
Mm9::chr19:58815004..58815018,+p@chr19:58815004..58815018
+
Mm9::chr19:58815567..58815615,+p@chr19:58815567..58815615
+
Mm9::chr19:58815700..58815714,+p@chr19:58815700..58815714
+
Mm9::chr19:58818526..58818556,+p@chr19:58818526..58818556
+
Mm9::chr19:58818562..58818584,+p@chr19:58818562..58818584
+
Mm9::chr19:58818563..58818576,-p@chr19:58818563..58818576
-
Mm9::chr19:58818648..58818660,-p@chr19:58818648..58818660
-
Mm9::chr1:133735373..133735386,+p@chr1:133735373..133735386
+
Mm9::chr1:40294060..40294070,+p@chr1:40294060..40294070
+
Mm9::chr2:115888250..115888298,-p10@Meis2
Mm9::chr2:143941914..143941925,+p@chr2:143941914..143941925
+
Mm9::chr2:155555095..155555179,-p1@Edem2
Mm9::chr2:19367259..19367278,+p1@Ptf1a
Mm9::chr2:19374076..19374083,+p2@ENSMUST00000149577
Mm9::chr2:19410182..19410200,+p@chr2:19410182..19410200
+
Mm9::chr2:28335694..28335705,+p@chr2:28335694..28335705
+
Mm9::chr2:28417953..28417972,-p@chr2:28417953..28417972
-
Mm9::chr2:62321694..62321710,-p1@Gcg
Mm9::chr2:69058046..69058062,+p1@G6pc2
Mm9::chr2:90306884..90306908,-p@chr2:90306884..90306908
-
Mm9::chr3:120773902..120773903,+p@chr3:120773902..120773903
+
Mm9::chr3:20149411..20149432,-p@chr3:20149411..20149432
-
Mm9::chr3:20158426..20158429,-p@chr3:20158426..20158429
-
Mm9::chr3:20173776..20173782,-p@chr3:20173776..20173782
-
Mm9::chr3:67277368..67277377,+p@chr3:67277368..67277377
+
Mm9::chr3:67277578..67277581,+p@chr3:67277578..67277581
+
Mm9::chr3:89035405..89035418,+p3@Muc1
Mm9::chr4:109066767..109066782,+p@chr4:109066767..109066782
+
Mm9::chr4:109066810..109066851,+p@chr4:109066810..109066851
+
Mm9::chr4:137262518..137262542,-p1@ENSMUST00000135358
p1@uc008vjp.1
Mm9::chr4:137263373..137263442,+p2@Rap1gap
Mm9::chr5:144951277..144951290,+p@chr5:144951277..144951290
+
Mm9::chr5:23293509..23293569,+p1@Rint1
Mm9::chr5:23293575..23293592,+p2@Rint1
Mm9::chr5:43495214..43495226,+p@chr5:43495214..43495226
+
Mm9::chr5:54068360..54068364,+p@chr5:54068360..54068364
+
Mm9::chr5:54097752..54097764,-p@chr5:54097752..54097764
-
Mm9::chr5:54098747..54098758,-p2@Cckar
Mm9::chr6:108778728..108778738,+p2@Edem1
Mm9::chr6:142246939..142246955,+p1@Iapp
Mm9::chr6:30510507..30510512,+p@chr6:30510507..30510512
+
Mm9::chr6:40381577..40381580,-p@chr6:40381577..40381580
-
Mm9::chr6:41304169..41304184,+p1@Gm5409
p1@Try10
Mm9::chr6:51270886..51270895,-p@chr6:51270886..51270895
-
Mm9::chr6:51270916..51270924,-p@chr6:51270916..51270924
-
Mm9::chr7:149864591..149864616,+p@chr7:149864591..149864616
+
Mm9::chr7:149865606..149865619,-p1@Ins2
Mm9::chr7:16789503..16789562,-p2@Dhx34
Mm9::chr7:29325737..29325747,+p3@Sycn
Mm9::chr7:31243262..31243273,+p6@Nphs1
Mm9::chr7:31243299..31243312,+p3@Nphs1
Mm9::chr8:114210413..114210426,+p@chr8:114210413..114210426
+
Mm9::chr8:114210516..114210521,-p@chr8:114210516..114210521
-
Mm9::chr8:114210599..114210611,+p@chr8:114210599..114210611
+
Mm9::chr8:114211101..114211115,+p@chr8:114211101..114211115
+
Mm9::chr8:114212487..114212533,+p@chr8:114212487..114212533
+
Mm9::chr8:114214263..114214282,-p@chr8:114214263..114214282
-
Mm9::chr8:114214598..114214609,-p@chr8:114214598..114214609
-
Mm9::chr8:114214659..114214665,-p@chr8:114214659..114214665
-
Mm9::chr9:22018294..22018310,-p1@1810064F22Rik
Mm9::chr9:60297477..60297496,-p@chr9:60297477..60297496
-
Mm9::chr9:60297503..60297512,-p@chr9:60297503..60297512
-
Mm9::chr9:65909167..65909187,+p@chr9:65909167..65909187
+
Mm9::chr9:74711202..74711243,-p@chr9:74711202..74711243
-
Mm9::chr9:95301467..95301472,-p@chr9:95301467..95301472
-
Mm9::chr9:95302657..95302661,-p@chr9:95302657..95302661
-
Mm9::chr9:96620459..96620478,-p9@Zbtb38
Mm9::chrX:137133125..137133129,-p@chrX:137133125..137133129
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0004571mannosyl-oligosaccharide 1,2-alpha-mannosidase activity0.00952426148919091
GO:0005179hormone activity0.00952426148919091
GO:0015924mannosyl-oligosaccharide mannosidase activity0.00952426148919091
GO:0008643carbohydrate transport0.0192014725404575
GO:0015923mannosidase activity0.0245801750004437



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
pancreas8.08e-3212
viscus1.58e-2519
gastrointestinal system2.40e-2047
body cavity1.64e-1137
body cavity or lining1.64e-1137
body cavity precursor4.01e-1138
intestine9.20e-1131
anatomical cavity9.35e-1139
stomach1.06e-1016
food storage organ1.06e-1016


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.000299581
MA0004.11.33591
MA0006.10.0282332
MA0007.10.580861
MA0009.10.562925
MA0014.10.000101065
MA0017.10.134704
MA0019.10.610751
MA0024.10.100754
MA0025.10.355017
MA0027.11.26761
MA0028.10.00840266
MA0029.10.422475
MA0030.11.04432
MA0031.10.366142
MA0038.10.480328
MA0040.10.32578
MA0041.10.146
MA0042.10.121695
MA0043.10.0576809
MA0046.11.00739
MA0048.10.656393
MA0050.10.0618277
MA0051.10.727218
MA0052.10.33777
MA0055.10.367448
MA0056.10
MA0057.10.0158635
MA0058.11.0111
MA0059.11.59677
MA0060.10.0358283
MA0061.10.312826
MA0063.10
MA0066.11.81021
MA0067.10.165516
MA0068.10.201647
MA0069.10.145773
MA0070.10.138431
MA0071.10.0611853
MA0072.10.132183
MA0073.10.00122466
MA0074.10.214022
MA0076.10.00313098
MA0077.10.520532
MA0078.11.85454
MA0081.10.0307141
MA0083.10.45934
MA0084.10.384948
MA0087.10.688425
MA0088.10.03105
MA0089.10
MA0090.10.353484
MA0091.13.5603
MA0092.10.659182
MA0093.12.34031
MA0095.10
MA0098.10
MA0100.10.00463836
MA0101.10.0895653
MA0103.12.06398
MA0105.10.0354905
MA0106.10.0615294
MA0107.10.215008
MA0108.20.442086
MA0109.10
MA0111.10.736179
MA0113.10.360993
MA0114.10.223593
MA0115.10.0585627
MA0116.10.131763
MA0117.10.183682
MA0119.10.230046
MA0122.10.05471
MA0124.10.137468
MA0125.10.336045
MA0130.10
MA0131.10.0063132
MA0132.10
MA0133.10
MA0135.11.871
MA0136.10.0698656
MA0139.10.00698221
MA0140.12.4866
MA0141.10.210188
MA0142.10.857164
MA0143.10.851529
MA0144.10.650818
MA0145.10.592776
MA0146.10.0323027
MA0147.10.615547
MA0148.12.43827
MA0149.10.000997328
MA0062.20.0012405
MA0035.20.684344
MA0039.20.000781736
MA0138.20.00577761
MA0002.20.511634
MA0137.20.683447
MA0104.20.329264
MA0047.21.54054
MA0112.21.27547
MA0065.20.197999
MA0150.10.976119
MA0151.10
MA0152.10.687831
MA0153.10.943263
MA0154.13.19883
MA0155.10.015306
MA0156.10.114993
MA0157.10.283879
MA0158.10
MA0159.11.02028
MA0160.10.75482
MA0161.10
MA0162.10.000181005
MA0163.10.0630124
MA0164.10.80911
MA0080.20.307096
MA0018.20.00852057
MA0099.20.0890627
MA0079.21.19648e-07
MA0102.20.425903
MA0258.10.641999
MA0259.10.324517
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:85&oldid=3072084"